NO09G02890.1, NO09G02890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02890.1
Unique NameNO09G02890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length915
Alignment locationchr9:848556..849640 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:848556..849640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02890.1 vs.
Match: EWM27517.1 (histone deacetylase superfamily [Nannochloropsis gaditana])

HSP 1 Score: 388.3 bits (996), Expect = 2.200e-104
Identity = 188/281 (66.90%), Postives = 213/281 (75.80%), Query Frame = 0 
Query:   42 RQWLSATGPQWTSLRAL-AGGGHKNEIARVETNVYSIVTTPKIGIGQRCLLVQYPG-------------RGEINN-GEGENVLWDCCAFLDQSTIEAVNALGGISKIILSHPHFLGSCITWSKAFGDVPIFLHKSDKEWITRPVEGKTSP---YFLWEGEETLSSLCPTLKLVRLGGHFPSSSVLLLESSAEDGKGVVFAGDTILPVPHGRWCSFMYSFPNLLPLPAFIVEDIKAKVEKLPDFDRLYGPFSTSSILGNAKEAVLESAQRYLDSLAGKYHGK 305
            RQWL + GP WTSLRAL A GGH   +  VE  VYSI T PK+GIGQRCLL+Q PG             RG+ ++ G G NVLWDCCAFLD++T++AV  LGGI KI+LSHPHFLGSC+TWSK FGD PI++H SDK W+TR  E +  P   Y  WEGEE    L P+LK+VRLGGHFPSSSVLL  S+ +D K V+F GDTILPVPHGRWCSFMYSFPNLLPLP F+VE I  KV  LP FDRLYGPFS+SSI GNAK+AVLESAQRYLDSLAGKYHGK
Sbjct:  451 RQWLPSDGPHWTSLRALSANGGHCTVVRPVEAAVYSIETQPKVGIGQRCLLLQQPGEESVQVSRVRGDKRGDRDDLGRGGNVLWDCCAFLDKATVQAVTELGGIQKIVLSHPHFLGSCVTWSKVFGDAPIYMHASDKHWVTRKDESRNPPSSRYSFWEGEEL--QLSPSLKVVRLGGHFPSSSVLLWASAPQDDKAVLFTGDTILPVPHGRWCSFMYSFPNLLPLPDFVVESILKKVTALPAFDRLYGPFSSSSIQGNAKDAVLESAQRYLDSLAGKYHGK 729
The following BLAST results are available for this feature:
BLAST of NO09G02890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27517.12.200e-10466.90histone deacetylase superfamily [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02890NO09G02890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02890.1NO09G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02890.1.cds1NO09G02890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02890.1.cds2NO09G02890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02890.1 ID=NO09G02890.1|Name=NO09G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=915bp
ATGGCCAGCCCTCCTCCCTCCCCTTTGGAGAGTGATGATGATCTGCCTAT
CTGCTGTACTTGTGGAAATGCCTACGGACCTTCCCCAAATCCTCCTTCGA
CGTGCAAGATTTGCAAAGACGACAGGCAATGGCTGTCAGCAACAGGGCCC
CAATGGACGAGTCTCCGCGCCCTAGCGGGGGGGGGGCACAAAAATGAGAT
TGCCCGGGTAGAAACCAATGTGTACAGCATCGTTACTACCCCAAAGATAG
GAATAGGACAGCGGTGTCTGTTGGTGCAGTATCCCGGACGTGGAGAAATA
AATAATGGGGAAGGAGAGAATGTATTGTGGGATTGTTGTGCTTTCCTGGA
CCAGTCCACCATTGAGGCCGTGAACGCATTGGGTGGGATTTCGAAGATTA
TTTTGTCACACCCACATTTTCTGGGCTCGTGCATTACGTGGAGCAAGGCT
TTTGGAGATGTGCCTATCTTCCTGCATAAGAGCGACAAAGAGTGGATCAC
CCGGCCTGTTGAGGGCAAAACGTCGCCTTATTTTCTATGGGAGGGAGAGG
AGACTTTGAGTTCTTTATGCCCAACCCTTAAGCTCGTGCGCCTGGGCGGT
CATTTTCCTTCCTCATCTGTGTTGCTCCTTGAGTCGTCGGCGGAAGACGG
GAAGGGTGTCGTGTTCGCAGGCGATACTATTCTGCCTGTACCCCATGGTC
GTTGGTGCTCGTTCATGTATAGCTTTCCCAATCTTTTGCCTTTGCCTGCT
TTTATCGTAGAGGATATCAAGGCAAAGGTGGAGAAGTTGCCTGATTTTGA
TAGGCTGTACGGCCCTTTTTCAACCTCGTCTATATTGGGAAATGCAAAGG
AGGCGGTGTTAGAAAGTGCGCAGCGGTATCTGGATTCCTTGGCGGGAAAG
TATCACGGCAAGTAA
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protein sequence of NO09G02890.1

>NO09G02890.1-protein ID=NO09G02890.1-protein|Name=NO09G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MASPPPSPLESDDDLPICCTCGNAYGPSPNPPSTCKICKDDRQWLSATGP
QWTSLRALAGGGHKNEIARVETNVYSIVTTPKIGIGQRCLLVQYPGRGEI
NNGEGENVLWDCCAFLDQSTIEAVNALGGISKIILSHPHFLGSCITWSKA
FGDVPIFLHKSDKEWITRPVEGKTSPYFLWEGEETLSSLCPTLKLVRLGG
HFPSSSVLLLESSAEDGKGVVFAGDTILPVPHGRWCSFMYSFPNLLPLPA
FIVEDIKAKVEKLPDFDRLYGPFSTSSILGNAKEAVLESAQRYLDSLAGK
YHGK*
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mRNA from alignment at chr9:848556..849640-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02890.1 ID=NO09G02890.1|Name=NO09G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1085bp|location=Sequence derived from alignment at chr9:848556..849640- (Nannochloropsis oceanica)
ATGGCCAGCCCTCCTCCCTCCCCTTTGGAGAGTGATGATGATCTGCCTAT
CTGCTGTACTTGTGGAAATGCCTACGGACCTTCCCCAAATCCTCCTTCGA
CGTGCAAGATTTGCAAAGACGACAGGTATGTATTTTCTGGGTATCCTTTG
CATCTGTCTCTTCAGTACATTAAGCAAGCTATGATGGGCAGTCATGGGTC
TTATCCCATCAACAAAATTTTGTGGCATAGATCTGTCTTCTATGCTTTTT
CCTCCTTGTCATACAGTCACCCATACTTTCCCGAAAACATCATAGGCAAT
GGCTGTCAGCAACAGGGCCCCAATGGACGAGTCTCCGCGCCCTAGCGGGG
GGGGGGCACAAAAATGAGATTGCCCGGGTAGAAACCAATGTGTACAGCAT
CGTTACTACCCCAAAGATAGGAATAGGACAGCGGTGTCTGTTGGTGCAGT
ATCCCGGACGTGGAGAAATAAATAATGGGGAAGGAGAGAATGTATTGTGG
GATTGTTGTGCTTTCCTGGACCAGTCCACCATTGAGGCCGTGAACGCATT
GGGTGGGATTTCGAAGATTATTTTGTCACACCCACATTTTCTGGGCTCGT
GCATTACGTGGAGCAAGGCTTTTGGAGATGTGCCTATCTTCCTGCATAAG
AGCGACAAAGAGTGGATCACCCGGCCTGTTGAGGGCAAAACGTCGCCTTA
TTTTCTATGGGAGGGAGAGGAGACTTTGAGTTCTTTATGCCCAACCCTTA
AGCTCGTGCGCCTGGGCGGTCATTTTCCTTCCTCATCTGTGTTGCTCCTT
GAGTCGTCGGCGGAAGACGGGAAGGGTGTCGTGTTCGCAGGCGATACTAT
TCTGCCTGTACCCCATGGTCGTTGGTGCTCGTTCATGTATAGCTTTCCCA
ATCTTTTGCCTTTGCCTGCTTTTATCGTAGAGGATATCAAGGCAAAGGTG
GAGAAGTTGCCTGATTTTGATAGGCTGTACGGCCCTTTTTCAACCTCGTC
TATATTGGGAAATGCAAAGGAGGCGGTGTTAGAAAGTGCGCAGCGGTATC
TGGATTCCTTGGCGGGAAAGTATCACGGCAAGTAA
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Coding sequence (CDS) from alignment at chr9:848556..849640-

>NO09G02890.1 ID=NO09G02890.1|Name=NO09G02890.1|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at chr9:848556..849640- (Nannochloropsis oceanica)
ATGGCCAGCCCTCCTCCCTCCCCTTTGGAGAGTGATGATGATCTGCCTAT
CTGCTGTACTTGTGGAAATGCCTACGGACCTTCCCCAAATCCTCCTTCGA
CGTGCAAGATTTGCAAAGACGACAGGCAATGGCTGTCAGCAACAGGGCCC
CAATGGACGAGTCTCCGCGCCCTAGCGGGGGGGGGGCACAAAAATGAGAT
TGCCCGGGTAGAAACCAATGTGTACAGCATCGTTACTACCCCAAAGATAG
GAATAGGACAGCGGTGTCTGTTGGTGCAGTATCCCGGACGTGGAGAAATA
AATAATGGGGAAGGAGAGAATGTATTGTGGGATTGTTGTGCTTTCCTGGA
CCAGTCCACCATTGAGGCCGTGAACGCATTGGGTGGGATTTCGAAGATTA
TTTTGTCACACCCACATTTTCTGGGCTCGTGCATTACGTGGAGCAAGGCT
TTTGGAGATGTGCCTATCTTCCTGCATAAGAGCGACAAAGAGTGGATCAC
CCGGCCTGTTGAGGGCAAAACGTCGCCTTATTTTCTATGGGAGGGAGAGG
AGACTTTGAGTTCTTTATGCCCAACCCTTAAGCTCGTGCGCCTGGGCGGT
CATTTTCCTTCCTCATCTGTGTTGCTCCTTGAGTCGTCGGCGGAAGACGG
GAAGGGTGTCGTGTTCGCAGGCGATACTATTCTGCCTGTACCCCATGGTC
GTTGGTGCTCGTTCATGTATAGCTTTCCCAATCTTTTGCCTTTGCCTGCT
TTTATCGTAGAGGATATCAAGGCAAAGGTGGAGAAGTTGCCTGATTTTGA
TAGGCTGTACGGCCCTTTTTCAACCTCGTCTATATTGGGAAATGCAAAGG
AGGCGGTGTTAGAAAGTGCGCAGCGGTATCTGGATTCCTTGGCGGGAAAG
TATCACGGCAAGTAA
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Synonyms
Publications