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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr9 | genome | chr9:842906..844934 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G02860.1 vs.
Match: EWM27509.1 (notchless protein [Nannochloropsis gaditana]) HSP 1 Score: 914.8 bits (2363), Expect = 1.200e-262 Identity = 433/516 (83.91%), Postives = 470/516 (91.09%), Query Frame = 0
Query: 8 TADPTSPPAPQTTPDPTATKKAKKDHILPASMVVQFQDATGERTGPQIDMPTDSTPAQLELLINELRKATGPPDEHQGKVPYSCYVNEVEVLESLRETLESQGIASGEAIVTISYQPLAVFRVRPVVRCTDTMPGHTEAVIHVSFSPDGRRLASGGGDTTVRFWDTGTCLPKHTCQGHRHHVLCTAWSPDGTRFASADKVGEIRLWEPVTGSAVGQPLKGHKQYVTSLAWEPLHLNDGKGERMASSSKDGTVRVWNVRTGACVTTLAQHDNSVECCKWGGEGLLYTASRDRTIKVWALNGRENGGGFGKLIKTLVGHGHRVNTLALSTDYVMRTGPFDHTGKLAHEATTAMEAAQAKYTAFLEGSGGRERLVSGSDDFTLFLWDPLAEEGGKKPVARMTGHQQAVNHISFSPDGRYIASASFDKKVKIWDGKTGRFLSTLVGHVGAVYMVAWSPDSRLLVSASKDSTLKLWDAAKGAKAKETLPGHFDEVYALDWAPNGTSVASGSKDRTIKIWRA 524
T TS P + TKKAKK LP SMVVQFQDATG++TGP+ID+PTDSTPAQLELLINELRKAT P +E QGKVPYSCY+N+VEVL+SLR+TLESQGI +GEA++ I+YQPLAVFRVRPVVRCTDTMPGHTEAVIHVSFSPDGRRLASGGGDTTVRFWDTGT LPK TC+GHRHHVLCTAWSPDG+RFASADK GEIRLW+P TG AVGQPL+GHKQ++TSLAWEPLHLN GKGER+ASSSKDGTVRVWNVRTGAC+TTLAQH NSVECCKWGG+G+LYT SRDRT+K+WAL GR+ GFGKL+KTLVGHGHR+NTLAL+TDYV+RTGPFDHTG LA +A + MEAA+AKY FLEGS GRERLVSGSDDFTLFLWDPL EEGGKKP+ARMTGHQQAVNHISFSPDGRY+ASASFDKKVK WDG+TGRFLSTLVGHVGAVYMVAWSPDSRLLVSASKDSTLKLWD AKGAKAKETLPGH DEVYALDWAPNG SVASGSKDRTIKIWRA
Sbjct: 29 TPSMTSEALPPPASELHVTKKAKKLPTLPGSMVVQFQDATGKQTGPRIDLPTDSTPAQLELLINELRKATDPTEESQGKVPYSCYINDVEVLDSLRDTLESQGIVNGEAVININYQPLAVFRVRPVVRCTDTMPGHTEAVIHVSFSPDGRRLASGGGDTTVRFWDTGTSLPKFTCRGHRHHVLCTAWSPDGSRFASADKAGEIRLWDPATGLAVGQPLQGHKQHITSLAWEPLHLNRGKGERLASSSKDGTVRVWNVRTGACLTTLAQHTNSVECCKWGGQGVLYTGSRDRTVKIWALQGRDGEAGFGKLVKTLVGHGHRINTLALNTDYVLRTGPFDHTGSLALDAASPMEAAEAKYRKFLEGSEGRERLVSGSDDFTLFLWDPLGEEGGKKPLARMTGHQQAVNHISFSPDGRYVASASFDKKVKTWDGRTGRFLSTLVGHVGAVYMVAWSPDSRLLVSASKDSTLKLWDVAKGAKAKETLPGHMDEVYALDWAPNGASVASGSKDRTIKIWRA 544
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G02860.1 ID=NO09G02860.1|Name=NO09G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp
CGGGGCTTCGCGCCACCATCCCCACTTACCTCCTGGTTGGGCTACGGCGT
TTGGGCCATGTGCCCCGGTTCATCCTCGGTCAATACAGCCTCACACCACA
TTAAAACACAGGATATTCCCACCAGAATATATCTACACATTTCTTACCCG
ACCTGTCTATCACTTGAATCCAACTCCCACAAAATCCATACGGAAGCAAA
CCTACCTTCCTTCCCCTCACAGCCCATCAATCATGGCTAGCAGCACCACT
GCTACGGCAGACCCGACCTCTCCCCCGGCACCCCAAACCACGCCTGACCC
CACTGCCACGAAGAAAGCTAAGAAGGATCATATCCTGCCGGCCTCTATGG
TGGTGCAATTTCAGGACGCCACGGGGGAACGCACAGGTCCCCAAATAGAC
ATGCCGACGGACTCCACGCCTGCCCAGTTGGAGTTGCTGATCAACGAGCT
CCGGAAAGCCACCGGTCCACCCGATGAGCACCAAGGCAAGGTTCCATACT
CATGCTATGTCAATGAAGTGGAGGTTTTAGAGAGCCTGCGGGAGACTTTG
GAAAGCCAAGGAATTGCGAGCGGCGAAGCTATTGTCACTATCAGCTACCA
GCCTCTGGCCGTGTTCAGAGTTCGCCCCGTCGTTCGCTGCACCGACACCA
TGCCAGGACATACCGAGGCGGTTATCCATGTCTCCTTTTCCCCTGACGGT
CGGCGTTTAGCCAGTGGGGGAGGGGATACAACTGTGCGGTTTTGGGACAC
GGGGACCTGTCTTCCCAAGCATACCTGCCAAGGTCACAGGCATCATGTGT
TGTGCACGGCCTGGTCTCCGGATGGCACGCGGTTTGCATCCGCGGACAAG
GTGGGGGAAATTCGGCTGTGGGAGCCTGTGACGGGTTCGGCGGTGGGGCA
GCCGTTGAAGGGACATAAGCAATACGTCACGTCCTTGGCTTGGGAACCGC
TACATTTGAACGATGGAAAGGGGGAGAGGATGGCTTCGAGTAGTAAGGAT
GGTACGGTCCGAGTATGGAATGTCCGGACTGGTGCTTGTGTGACCACCTT
GGCGCAGCATGATAACTCTGTGGAGTGCTGTAAGTGGGGAGGGGAAGGCC
TGCTTTACACAGCCTCGCGAGACCGGACCATTAAAGTATGGGCCTTGAAC
GGCAGAGAAAACGGAGGGGGGTTCGGCAAGTTAATCAAAACGCTGGTCGG
ACACGGGCATCGAGTCAACACCCTCGCATTAAGCACTGATTATGTCATGC
GCACGGGTCCTTTTGACCACACAGGGAAGCTGGCCCATGAGGCAACGACG
GCCATGGAGGCAGCCCAAGCAAAATATACTGCCTTTTTGGAAGGGTCGGG
AGGGAGAGAAAGGCTTGTATCGGGCTCGGACGATTTTACGTTATTCTTGT
GGGATCCTCTGGCGGAGGAGGGGGGGAAGAAGCCTGTTGCTAGGATGACG
GGGCACCAGCAGGCGGTGAATCACATTTCGTTCTCGCCTGACGGGAGGTA
TATTGCGAGTGCCTCGTTTGATAAAAAGGTTAAAATATGGGATGGGAAGA
CGGGGAGGTTCTTGTCTACGTTGGTAGGGCATGTTGGGGCGGTGTACATG
GTGGCTTGGTCCCCTGATAGCCGGCTGTTGGTGAGTGCCAGTAAGGACAG
CACTTTGAAGTTGTGGGATGCGGCCAAGGGTGCCAAGGCGAAGGAGACGC
TGCCCGGGCATTTTGACGAGGTATATGCGTTAGATTGGGCGCCTAACGGC
ACGAGTGTGGCCTCTGGGAGTAAGGATCGAACGATAAAGATTTGGAGAGC
ATAAGCAGGTTTTCAACGGGAGGGCGGGAGTGAGGGGAGATATGAGGGAG
ATAAATGCGCCGTGCAATACTTAGATGATTGAAACCAAAAGCATTTTATC
TTGTGAATAAGTAGATAGGGTGGTGGCATAGTAGAGAATCGATTTATACC
AGCTACTAGGACAGCAACATGCTGTACTGGCCCCTGAAACGAGGAGTGAA
CGAGTGAGACAGAAGATAGACTGCATCCT back to topprotein sequence of NO09G02860.1 >NO09G02860.1-protein ID=NO09G02860.1-protein|Name=NO09G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp
MASSTTATADPTSPPAPQTTPDPTATKKAKKDHILPASMVVQFQDATGER
TGPQIDMPTDSTPAQLELLINELRKATGPPDEHQGKVPYSCYVNEVEVLE
SLRETLESQGIASGEAIVTISYQPLAVFRVRPVVRCTDTMPGHTEAVIHV
SFSPDGRRLASGGGDTTVRFWDTGTCLPKHTCQGHRHHVLCTAWSPDGTR
FASADKVGEIRLWEPVTGSAVGQPLKGHKQYVTSLAWEPLHLNDGKGERM
ASSSKDGTVRVWNVRTGACVTTLAQHDNSVECCKWGGEGLLYTASRDRTI
KVWALNGRENGGGFGKLIKTLVGHGHRVNTLALSTDYVMRTGPFDHTGKL
AHEATTAMEAAQAKYTAFLEGSGGRERLVSGSDDFTLFLWDPLAEEGGKK
PVARMTGHQQAVNHISFSPDGRYIASASFDKKVKIWDGKTGRFLSTLVGH
VGAVYMVAWSPDSRLLVSASKDSTLKLWDAAKGAKAKETLPGHFDEVYAL
DWAPNGTSVASGSKDRTIKIWRA* back to topmRNA from alignment at chr9:842906..844934- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G02860.1 ID=NO09G02860.1|Name=NO09G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp|location=Sequence derived from alignment at chr9:842906..844934- (Nannochloropsis oceanica)
CGGGGCTTCGCGCCACCATCCCCACTTACCTCCTGGTTGGGCTACGGCGT
TTGGGCCATGTGCCCCGGTTCATCCTCGGTCAATACAGCCTCACACCACA
TTAAAACACAGGATATTCCCACCAGAATATATCTACACATTTCTTACCCG
ACCTGTCTATCACTTGAATCCAACTCCCACAAAATCCATACGGAAGCAAA
CCTACCTTCCTTCCCCTCACAGCCCATCAATCATGGCTAGCAGCACCACT
GCTACGGCAGACCCGACCTCTCCCCCGGCACCCCAAACCACGCCTGACCC
CACTGCCACGAAGAAAGCTAAGAAGGATCATATCCTGCCGGCCTCTATGG
TGGTGCAATTTCAGGACGCCACGGGGGAACGCACAGGTCCCCAAATAGAC
ATGCCGACGGACTCCACGCCTGCCCAGTTGGAGTTGCTGATCAACGAGCT
CCGGAAAGCCACCGGTCCACCCGATGAGCACCAAGGCAAGGTTCCATACT
CATGCTATGTCAATGAAGTGGAGGTTTTAGAGAGCCTGCGGGAGACTTTG
GAAAGCCAAGGAATTGCGAGCGGCGAAGCTATTGTCACTATCAGCTACCA
GCCTCTGGCCGTGTTCAGAGTTCGCCCCGTCGTTCGCTGCACCGACACCA
TGCCAGGACATACCGAGGCGGTTATCCATGTCTCCTTTTCCCCTGACGGT
CGGCGTTTAGCCAGTGGGGGAGGGGATACAACTGTGCGGTTTTGGGACAC
GGGGACCTGTCTTCCCAAGCATACCTGCCAAGGTCACAGGCATCATGTGT
TGTGCACGGCCTGGTCTCCGGATGGCACGCGGTTTGCATCCGCGGACAAG
GTGGGGGAAATTCGGCTGTGGGAGCCTGTGACGGGTTCGGCGGTGGGGCA
GCCGTTGAAGGGACATAAGCAATACGTCACGTCCTTGGCTTGGGAACCGC
TACATTTGAACGATGGAAAGGGGGAGAGGATGGCTTCGAGTAGTAAGGAT
GGTACGGTCCGAGTATGGAATGTCCGGACTGGTGCTTGTGTGACCACCTT
GGCGCAGCATGATAACTCTGTGGAGTGCTGTAAGTGGGGAGGGGAAGGCC
TGCTTTACACAGCCTCGCGAGACCGGACCATTAAAGTATGGGCCTTGAAC
GGCAGAGAAAACGGAGGGGGGTTCGGCAAGTTAATCAAAACGCTGGTCGG
ACACGGGCATCGAGTCAACACCCTCGCATTAAGCACTGATTATGTCATGC
GCACGGGTCCTTTTGACCACACAGGGAAGCTGGCCCATGAGGCAACGACG
GCCATGGAGGCAGCCCAAGCAAAATATACTGCCTTTTTGGAAGGGTCGGG
AGGGAGAGAAAGGCTTGTATCGGGCTCGGACGATTTTACGTTATTCTTGT
GGGATCCTCTGGCGGAGGAGGGGGGGAAGAAGCCTGTTGCTAGGATGACG
GGGCACCAGCAGGCGGTGAATCACATTTCGTTCTCGCCTGACGGGAGGTA
TATTGCGAGTGCCTCGTTTGATAAAAAGGTTAAAATATGGGATGGGAAGA
CGGGGAGGTTCTTGTCTACGTTGGTAGGGCATGTTGGGGCGGTGTACATG
GTGGCTTGGTCCCCTGATAGCCGGCTGTTGGTGAGTGCCAGTAAGGACAG
CACTTTGAAGTTGTGGGATGCGGCCAAGGGTGCCAAGGCGAAGGAGACGC
TGCCCGGGCATTTTGACGAGGTATATGCGTTAGATTGGGCGCCTAACGGC
ACGAGTGTGGCCTCTGGGAGTAAGGATCGAACGATAAAGATTTGGAGAGC
ATAAGCAGGTTTTCAACGGGAGGGCGGGAGTGAGGGGAGATATGAGGGAG
ATAAATGCGCCGTGCAATACTTAGATGATTGAAACCAAAAGCATTTTATC
TTGTGAATAAGTAGATAGGGTGGTGGCATAGTAGAGAATCGATTTATACC
AGCTACTAGGACAGCAACATGCTGTACTGGCCCCTGAAACGAGGAGTGAA
CGAGTGAGACAGAAGATAGACTGCATCCT back to topCoding sequence (CDS) from alignment at chr9:842906..844934- >NO09G02860.1 ID=NO09G02860.1|Name=NO09G02860.1|organism=Nannochloropsis oceanica|type=CDS|length=1572bp|location=Sequence derived from alignment at chr9:842906..844934- (Nannochloropsis oceanica)
ATGGCTAGCAGCACCACTGCTACGGCAGACCCGACCTCTCCCCCGGCACC
CCAAACCACGCCTGACCCCACTGCCACGAAGAAAGCTAAGAAGGATCATA
TCCTGCCGGCCTCTATGGTGGTGCAATTTCAGGACGCCACGGGGGAACGC
ACAGGTCCCCAAATAGACATGCCGACGGACTCCACGCCTGCCCAGTTGGA
GTTGCTGATCAACGAGCTCCGGAAAGCCACCGGTCCACCCGATGAGCACC
AAGGCAAGGTTCCATACTCATGCTATGTCAATGAAGTGGAGGTTTTAGAG
AGCCTGCGGGAGACTTTGGAAAGCCAAGGAATTGCGAGCGGCGAAGCTAT
TGTCACTATCAGCTACCAGCCTCTGGCCGTGTTCAGAGTTCGCCCCGTCG
TTCGCTGCACCGACACCATGCCAGGACATACCGAGGCGGTTATCCATGTC
TCCTTTTCCCCTGACGGTCGGCGTTTAGCCAGTGGGGGAGGGGATACAAC
TGTGCGGTTTTGGGACACGGGGACCTGTCTTCCCAAGCATACCTGCCAAG
GTCACAGGCATCATGTGTTGTGCACGGCCTGGTCTCCGGATGGCACGCGG
TTTGCATCCGCGGACAAGGTGGGGGAAATTCGGCTGTGGGAGCCTGTGAC
GGGTTCGGCGGTGGGGCAGCCGTTGAAGGGACATAAGCAATACGTCACGT
CCTTGGCTTGGGAACCGCTACATTTGAACGATGGAAAGGGGGAGAGGATG
GCTTCGAGTAGTAAGGATGGTACGGTCCGAGTATGGAATGTCCGGACTGG
TGCTTGTGTGACCACCTTGGCGCAGCATGATAACTCTGTGGAGTGCTGTA
AGTGGGGAGGGGAAGGCCTGCTTTACACAGCCTCGCGAGACCGGACCATT
AAAGTATGGGCCTTGAACGGCAGAGAAAACGGAGGGGGGTTCGGCAAGTT
AATCAAAACGCTGGTCGGACACGGGCATCGAGTCAACACCCTCGCATTAA
GCACTGATTATGTCATGCGCACGGGTCCTTTTGACCACACAGGGAAGCTG
GCCCATGAGGCAACGACGGCCATGGAGGCAGCCCAAGCAAAATATACTGC
CTTTTTGGAAGGGTCGGGAGGGAGAGAAAGGCTTGTATCGGGCTCGGACG
ATTTTACGTTATTCTTGTGGGATCCTCTGGCGGAGGAGGGGGGGAAGAAG
CCTGTTGCTAGGATGACGGGGCACCAGCAGGCGGTGAATCACATTTCGTT
CTCGCCTGACGGGAGGTATATTGCGAGTGCCTCGTTTGATAAAAAGGTTA
AAATATGGGATGGGAAGACGGGGAGGTTCTTGTCTACGTTGGTAGGGCAT
GTTGGGGCGGTGTACATGGTGGCTTGGTCCCCTGATAGCCGGCTGTTGGT
GAGTGCCAGTAAGGACAGCACTTTGAAGTTGTGGGATGCGGCCAAGGGTG
CCAAGGCGAAGGAGACGCTGCCCGGGCATTTTGACGAGGTATATGCGTTA
GATTGGGCGCCTAACGGCACGAGTGTGGCCTCTGGGAGTAAGGATCGAAC
GATAAAGATTTGGAGAGCATAA back to top
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