NO09G02830.1, NO09G02830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02830.1
Unique NameNO09G02830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1473
Alignment locationchr9:832996..834600 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:832996..834600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02830.1 vs.
Match: EWM27519.1 (hypothetical protein Naga_100101g9 [Nannochloropsis gaditana])

HSP 1 Score: 452.2 bits (1162), Expect = 2.000e-123
Identity = 249/432 (57.64%), Postives = 304/432 (70.37%), Query Frame = 0 
Query:   63 MTPNTSVFHDLRAAAADLLAEQQQQQPPETRGAVHIDHQALDRLAARLSLCEVRSKVNRVGLPLKFARPMDELNFHAMLALLSFGGAYDGGNAEHPRMLAESARDTVLFGLIGLHLSKADMHAGFLLTVTRSDVSSYFGIDGMVSVPHESMPAIHVERPGPLCQFVNDLVWMMNQVGERLKELGEPDLAHFILSSMRGEGVPTAARLVTALDVAFPTTFGAPLPLPRLLKTKNDDKGFVCHKKSLMLVSELYHRLRHTFSDLAFQDFTQAPGYVTPAIITHLIRLGVLHPTRSQDEDDKADAAAGASMMGKPDRVAPLTAAAILAVDGLALRLAEGATEREGGGSGHPDASEVLAPLDLSYYLDDIWSKEDGQEQVQRQQQQQVKREDAEQLTPKGE-EQEPQTTQQQKGVVGGLNA---LTFVPPQGQTVM 491
            MTPN S F +LR  A ++L+ Q+  Q  E    V +DH+A+ RLAA+ SL E+R KV RVGLPLKF RP+DELNFHAML+LLSFG AY+G       +L ESARDTVLFGLIGLHLSK D+ AGFL+TVTRSDV+SYFGI+ M +VPH+SMPAI VERPGPL + V++LV  MN VG RLKELGEPDLAHFIL++MRGE VPT ARLVTALD AFP+TFGAPLP P        + GF C KKSLML  ELYHRLRH+F++  FQDF++APGY TPA+IT L+  GVL P      D++A AAA A ++  PD VAPLTA  ++A+D LA+R+AE ATE E  GS      + + PLDLSY+LD++WSK   QE  +R+QQ +          P G  EQ    T+   G +    A    +FVPP+GQTVM
Sbjct:    1 MTPN-SAFQNLRDTATNILSAQKDMQASERTSIVRVDHEAVGRLAAQFSLSEIRDKVARVGLPLKFPRPLDELNFHAMLSLLSFGKAYEGDFISQSGLLRESARDTVLFGLIGLHLSKTDLRAGFLMTVTRSDVASYFGIEPMENVPHDSMPAIRVERPGPLSRLVDELVTSMNTVGARLKELGEPDLAHFILAAMRGEEVPTVARLVTALDAAFPSTFGAPLPCP----GSRTETGFHCRKKSLMLAGELYHRLRHSFAEFDFQDFSRAPGYATPALITFLVSRGVLCPMEDDGGDEQAHAAAVARLLENPDNVAPLTAGTMVAMDELAVRMAEAATEGEVEGSHASSTEKAVVPLDLSYFLDEMWSK---QESERRRQQTE----------PAGNGEQSCAATEPATGPLHAEMAPAGPSFVPPRGQTVM 414
The following BLAST results are available for this feature:
BLAST of NO09G02830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27519.12.000e-12357.64hypothetical protein Naga_100101g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02830NO09G02830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02830.1NO09G02830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02830.1.cds1NO09G02830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02830.1.cds2NO09G02830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02830.1 ID=NO09G02830.1|Name=NO09G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp
ATGCAACATTGCCGCAGCTTCATGACCCGGTCAGGAGAAGATAGTGTGTC
TACGCATCGCATTGGTGGGGGCAGTGCCTGGCTCAAACTCACGATGCGAT
TTCAAACTCTTGGAGGAGGACTGAAAGTGGGCTTTTTCACCACTGTTACC
GCCGCCGCCCTTACCGATCCTTCGGCCCGCCTGAAAATGACGCCCAACAC
TTCCGTCTTCCATGACCTCCGCGCCGCCGCAGCCGACCTCCTGGCGGAGC
AGCAGCAGCAGCAGCCGCCCGAGACTAGAGGCGCCGTCCACATCGACCAC
CAGGCCCTGGATCGACTGGCGGCCCGCTTGTCTCTTTGTGAAGTCCGTTC
TAAAGTGAACAGGGTGGGGCTGCCGCTCAAGTTCGCTCGGCCGATGGATG
AACTCAATTTCCACGCCATGCTGGCGTTGCTAAGCTTTGGAGGGGCGTAC
GACGGCGGCAACGCGGAGCACCCACGGATGCTGGCAGAATCGGCCCGAGA
CACGGTCCTCTTTGGTCTCATTGGTCTGCATCTGAGCAAGGCCGACATGC
ATGCGGGATTTCTTCTGACGGTGACGCGCTCGGACGTGTCCAGTTACTTT
GGGATCGACGGCATGGTGAGTGTTCCTCACGAGAGCATGCCTGCCATCCA
CGTAGAGCGTCCTGGGCCGCTCTGTCAGTTTGTCAATGACTTGGTCTGGA
TGATGAATCAGGTGGGGGAGCGCTTAAAGGAGCTGGGGGAGCCTGACCTG
GCTCATTTCATCTTGAGTTCTATGCGGGGGGAGGGTGTTCCTACAGCCGC
TCGCCTGGTGACGGCATTGGACGTAGCCTTTCCCACCACCTTCGGCGCGC
CTTTGCCTCTGCCTCGGCTGCTTAAAACGAAAAACGATGACAAGGGTTTT
GTGTGTCACAAAAAGTCCTTGATGCTCGTCAGCGAGCTGTACCATCGTCT
CCGCCACACTTTTTCGGATTTGGCCTTCCAAGACTTTACCCAAGCTCCGG
GGTACGTCACACCTGCCATTATCACCCACCTTATCCGCCTCGGTGTGCTT
CATCCTACCCGCAGCCAGGACGAAGACGACAAGGCGGACGCAGCAGCTGG
GGCGTCTATGATGGGGAAGCCTGACAGGGTAGCGCCTTTGACGGCGGCGG
CTATTTTGGCTGTGGATGGGTTGGCGCTACGGTTAGCAGAGGGAGCGACG
GAACGAGAAGGTGGTGGAAGTGGGCATCCGGACGCATCAGAGGTGCTGGC
ACCGCTGGATTTAAGTTATTATTTGGATGATATCTGGTCGAAGGAGGATG
GGCAAGAGCAAGTGCAGCGGCAGCAGCAGCAGCAAGTGAAGAGGGAAGAC
GCGGAGCAATTGACACCGAAAGGGGAGGAGCAAGAGCCGCAGACGACGCA
ACAACAGAAAGGAGTGGTGGGGGGATTGAATGCACTTACGTTTGTACCTC
CGCAAGGGCAGACAGTTATGTAG
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protein sequence of NO09G02830.1

>NO09G02830.1-protein ID=NO09G02830.1-protein|Name=NO09G02830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MQHCRSFMTRSGEDSVSTHRIGGGSAWLKLTMRFQTLGGGLKVGFFTTVT
AAALTDPSARLKMTPNTSVFHDLRAAAADLLAEQQQQQPPETRGAVHIDH
QALDRLAARLSLCEVRSKVNRVGLPLKFARPMDELNFHAMLALLSFGGAY
DGGNAEHPRMLAESARDTVLFGLIGLHLSKADMHAGFLLTVTRSDVSSYF
GIDGMVSVPHESMPAIHVERPGPLCQFVNDLVWMMNQVGERLKELGEPDL
AHFILSSMRGEGVPTAARLVTALDVAFPTTFGAPLPLPRLLKTKNDDKGF
VCHKKSLMLVSELYHRLRHTFSDLAFQDFTQAPGYVTPAIITHLIRLGVL
HPTRSQDEDDKADAAAGASMMGKPDRVAPLTAAAILAVDGLALRLAEGAT
EREGGGSGHPDASEVLAPLDLSYYLDDIWSKEDGQEQVQRQQQQQVKRED
AEQLTPKGEEQEPQTTQQQKGVVGGLNALTFVPPQGQTVM*
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mRNA from alignment at chr9:832996..834600-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02830.1 ID=NO09G02830.1|Name=NO09G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp|location=Sequence derived from alignment at chr9:832996..834600- (Nannochloropsis oceanica)
ATGCAACATTGCCGCAGCTTCATGACCCGGTCAGGAGAAGATAGTGTGTC
TACGCATCGCATTGGTGGGGGCAGTGCCTGGCTCAAACTCACGATGCGAT
TTCAAACTCTTGGAGGAGGACTGAAAGTGGGTGAGTGCTGCTTTTCCGCC
ACCTCCGAGAGTCTACGAGTAACTTCCTCGACTGTTCTTGTACGTCACCT
GTTTTTGTGTGCACGTGCCCTTTCATGATCCTCACTCAAACTCACACCTG
CCCATCTACCAGGCTTTTTCACCACTGTTACCGCCGCCGCCCTTACCGAT
CCTTCGGCCCGCCTGAAAATGACGCCCAACACTTCCGTCTTCCATGACCT
CCGCGCCGCCGCAGCCGACCTCCTGGCGGAGCAGCAGCAGCAGCAGCCGC
CCGAGACTAGAGGCGCCGTCCACATCGACCACCAGGCCCTGGATCGACTG
GCGGCCCGCTTGTCTCTTTGTGAAGTCCGTTCTAAAGTGAACAGGGTGGG
GCTGCCGCTCAAGTTCGCTCGGCCGATGGATGAACTCAATTTCCACGCCA
TGCTGGCGTTGCTAAGCTTTGGAGGGGCGTACGACGGCGGCAACGCGGAG
CACCCACGGATGCTGGCAGAATCGGCCCGAGACACGGTCCTCTTTGGTCT
CATTGGTCTGCATCTGAGCAAGGCCGACATGCATGCGGGATTTCTTCTGA
CGGTGACGCGCTCGGACGTGTCCAGTTACTTTGGGATCGACGGCATGGTG
AGTGTTCCTCACGAGAGCATGCCTGCCATCCACGTAGAGCGTCCTGGGCC
GCTCTGTCAGTTTGTCAATGACTTGGTCTGGATGATGAATCAGGTGGGGG
AGCGCTTAAAGGAGCTGGGGGAGCCTGACCTGGCTCATTTCATCTTGAGT
TCTATGCGGGGGGAGGGTGTTCCTACAGCCGCTCGCCTGGTGACGGCATT
GGACGTAGCCTTTCCCACCACCTTCGGCGCGCCTTTGCCTCTGCCTCGGC
TGCTTAAAACGAAAAACGATGACAAGGGTTTTGTGTGTCACAAAAAGTCC
TTGATGCTCGTCAGCGAGCTGTACCATCGTCTCCGCCACACTTTTTCGGA
TTTGGCCTTCCAAGACTTTACCCAAGCTCCGGGGTACGTCACACCTGCCA
TTATCACCCACCTTATCCGCCTCGGTGTGCTTCATCCTACCCGCAGCCAG
GACGAAGACGACAAGGCGGACGCAGCAGCTGGGGCGTCTATGATGGGGAA
GCCTGACAGGGTAGCGCCTTTGACGGCGGCGGCTATTTTGGCTGTGGATG
GGTTGGCGCTACGGTTAGCAGAGGGAGCGACGGAACGAGAAGGTGGTGGA
AGTGGGCATCCGGACGCATCAGAGGTGCTGGCACCGCTGGATTTAAGTTA
TTATTTGGATGATATCTGGTCGAAGGAGGATGGGCAAGAGCAAGTGCAGC
GGCAGCAGCAGCAGCAAGTGAAGAGGGAAGACGCGGAGCAATTGACACCG
AAAGGGGAGGAGCAAGAGCCGCAGACGACGCAACAACAGAAAGGAGTGGT
GGGGGGATTGAATGCACTTACGTTTGTACCTCCGCAAGGGCAGACAGTTA
TGTAG
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Coding sequence (CDS) from alignment at chr9:832996..834600-

>NO09G02830.1 ID=NO09G02830.1|Name=NO09G02830.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr9:832996..834600- (Nannochloropsis oceanica)
ATGCAACATTGCCGCAGCTTCATGACCCGGTCAGGAGAAGATAGTGTGTC
TACGCATCGCATTGGTGGGGGCAGTGCCTGGCTCAAACTCACGATGCGAT
TTCAAACTCTTGGAGGAGGACTGAAAGTGGGCTTTTTCACCACTGTTACC
GCCGCCGCCCTTACCGATCCTTCGGCCCGCCTGAAAATGACGCCCAACAC
TTCCGTCTTCCATGACCTCCGCGCCGCCGCAGCCGACCTCCTGGCGGAGC
AGCAGCAGCAGCAGCCGCCCGAGACTAGAGGCGCCGTCCACATCGACCAC
CAGGCCCTGGATCGACTGGCGGCCCGCTTGTCTCTTTGTGAAGTCCGTTC
TAAAGTGAACAGGGTGGGGCTGCCGCTCAAGTTCGCTCGGCCGATGGATG
AACTCAATTTCCACGCCATGCTGGCGTTGCTAAGCTTTGGAGGGGCGTAC
GACGGCGGCAACGCGGAGCACCCACGGATGCTGGCAGAATCGGCCCGAGA
CACGGTCCTCTTTGGTCTCATTGGTCTGCATCTGAGCAAGGCCGACATGC
ATGCGGGATTTCTTCTGACGGTGACGCGCTCGGACGTGTCCAGTTACTTT
GGGATCGACGGCATGGTGAGTGTTCCTCACGAGAGCATGCCTGCCATCCA
CGTAGAGCGTCCTGGGCCGCTCTGTCAGTTTGTCAATGACTTGGTCTGGA
TGATGAATCAGGTGGGGGAGCGCTTAAAGGAGCTGGGGGAGCCTGACCTG
GCTCATTTCATCTTGAGTTCTATGCGGGGGGAGGGTGTTCCTACAGCCGC
TCGCCTGGTGACGGCATTGGACGTAGCCTTTCCCACCACCTTCGGCGCGC
CTTTGCCTCTGCCTCGGCTGCTTAAAACGAAAAACGATGACAAGGGTTTT
GTGTGTCACAAAAAGTCCTTGATGCTCGTCAGCGAGCTGTACCATCGTCT
CCGCCACACTTTTTCGGATTTGGCCTTCCAAGACTTTACCCAAGCTCCGG
GGTACGTCACACCTGCCATTATCACCCACCTTATCCGCCTCGGTGTGCTT
CATCCTACCCGCAGCCAGGACGAAGACGACAAGGCGGACGCAGCAGCTGG
GGCGTCTATGATGGGGAAGCCTGACAGGGTAGCGCCTTTGACGGCGGCGG
CTATTTTGGCTGTGGATGGGTTGGCGCTACGGTTAGCAGAGGGAGCGACG
GAACGAGAAGGTGGTGGAAGTGGGCATCCGGACGCATCAGAGGTGCTGGC
ACCGCTGGATTTAAGTTATTATTTGGATGATATCTGGTCGAAGGAGGATG
GGCAAGAGCAAGTGCAGCGGCAGCAGCAGCAGCAAGTGAAGAGGGAAGAC
GCGGAGCAATTGACACCGAAAGGGGAGGAGCAAGAGCCGCAGACGACGCA
ACAACAGAAAGGAGTGGTGGGGGGATTGAATGCACTTACGTTTGTACCTC
CGCAAGGGCAGACAGTTATGTAG
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Synonyms
Publications