NO09G02800.1, NO09G02800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02800.1
Unique NameNO09G02800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2057
Alignment locationchr9:828758..830975 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:828758..830975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G02800.1 vs.
Match: EWM27510.1 (glycoside hydrolase family 3 domain protein [Nannochloropsis gaditana])

HSP 1 Score: 892.9 bits (2306), Expect = 5.700e-256
Identity = 435/609 (71.43%), Postives = 512/609 (84.07%), Query Frame = 0
Query:   12 QQEACEEHIRQLLAQMTVEEKCMQMGQIDKAYVKDKYDLSTKGIGSVISGGSGQPFENSPLGFCDMIDDYQQYALKSRLGIPLLYGGDAVHGMSLSKGTTLFPHNIGLGAANNPSLVEAVARATAIETSCTGVFWAFAPCVAVVGDCRWGRTYESFGDDAEAVTANGVAHIKGLQGATIDMWGTRVSGTVAACAKHYVGDGGVAFGTGQMAEKLLDRGDVRLNEEEFKEHLRPYVAAVKAGVMSIMVSFSSVHGKQMHAHRELIEGVLRQQMGFKGLVVSDWAGHDQLREGSTPVEKLALCINAGVDMIMIPEHYNAYADHIHEALTVGLLLPARIDEACARVLRLKYQLGLFASPTAPL--SNRALLPQIRCPAHLALARRAVQQSVVLLKNKAGVLPLKGVSLKHLFVCGKGANDLGLTCGGWSTSWQGASGATTEGTPIMKALTKALPRTRVTYDVYGKGLDATLHQVVLCVVSEDPPYAEWFGDRKDLALSEEDQQVLDAVTHKGIPVVVVQLAGRPLLARDDWAGTDALLHAWLPGTEGGYGIADVLLGHVKPVGRMPVGLPRDLPVAEATRQMFAHGSGLSYVEEDLHCSASIPPIFLQREST 619
            Q++  EE I +LL +MT +EK MQ+GQ+DKAY+K+K DL+T GIGSVISGGSGQPFENSP GFC+MI DYQ+ AL+SRL IPLLYGGDAVHGMSLSK TTLFPHNIGLGAAN+PSL+EA+ARATAIETSCTGV WAFAPCVAVV DCRWGRTYESFG+DA+AVTANGVAHIKGLQ      WG R+ GTVAACAKHYVGDG V FGTGQM  K+LDRGDVRL E EF+E LRPY  AVKAGVMSIMVSFSSV GKQMHAHRELIEGVLRQ++GF+GLVVSDWAGH+QLR+G  PVEKLALCINAGVDMIMIPEHY+AY +H+ EAL  GL+ PAR+DEACARVLRLK++LGLF+   AP+   N+ALL ++RCPAHLALARRAVQ+S+VLLKN+A VLPL+  +L+HLFVCGKGA+DLGLTCGGWSTSWQGA G  T GT I+ AL + LP T+VTYD  G+G     HQ+V+ VV+EDPPYAEWFGDR DL ++ ++Q +++ VT++G+PV+VVQLAGRPLL  D+WA  DALLHAWLPG+EGGYGI D+L G   P G+MP+GLP DL V +A+R MFA G G++Y ++D+    ++P  FLQRE T
Sbjct:    8 QEDINEEFILKLLHKMTRQEKLMQIGQVDKAYIKEKNDLATLGIGSVISGGSGQPFENSPAGFCEMIGDYQEAALRSRLKIPLLYGGDAVHGMSLSKETTLFPHNIGLGAANDPSLIEAIARATAIETSCTGVVWAFAPCVAVVRDCRWGRTYESFGEDADAVTANGVAHIKGLQDTAAQSWGVRIPGTVAACAKHYVGDGAVTFGTGQMGAKILDRGDVRLGEAEFEEQLRPYREAVKAGVMSIMVSFSSVQGKQMHAHRELIEGVLRQELGFQGLVVSDWAGHEQLRDGEGPVEKLALCINAGVDMIMIPEHYHAYQEHMQEALVGGLISPARLDEACARVLRLKHKLGLFSFQNAPIQDQNQALLAKVRCPAHLALARRAVQKSIVLLKNRACVLPLRKQTLRHLFVCGKGADDLGLTCGGWSTSWQGACGPITTGTTILSALREGLPDTQVTYDAAGEGFKPDQHQMVILVVAEDPPYAEWFGDRTDLYITAQEQLMVERVTNRGVPVIVVQLAGRPLLDCDNWARVDALLHAWLPGSEGGYGIVDILCGDACPDGKMPLGLPEDLDVPKASRCMFAKGRGMTY-DDDVVQGKNVPQPFLQREDT 615          
The following BLAST results are available for this feature:
BLAST of NO09G02800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27510.15.700e-25671.43glycoside hydrolase family 3 domain protein [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02800NO09G02800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02800.1NO09G02800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02800.1.cds1NO09G02800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02800.1.cds2NO09G02800.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02800.1 ID=NO09G02800.1|Name=NO09G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2057bp
AAAACCCACTTAGGGATCCTCAGGAGTAAATTTACGCCCAAAATGGCAGA
TGACTGTGCCAAGATAAAGATGCAGCAGCAGGAAGCATGCGAAGAGCACA
TTCGGCAACTCCTGGCGCAGATGACGGTCGAAGAGAAATGCATGCAAATG
GGACAAATTGACAAGGCCTACGTCAAGGACAAGTACGACCTCAGCACCAA
GGGTATTGGGAGTGTGATAAGTGGCGGCAGTGGGCAGCCCTTTGAAAACT
CTCCCTTGGGCTTTTGCGACATGATTGACGACTACCAGCAGTACGCCCTA
AAATCAAGACTTGGCATTCCCTTGCTTTACGGCGGCGATGCGGTGCACGG
CATGAGCTTATCTAAGGGTACCACGCTATTCCCCCACAACATCGGTTTGG
GAGCTGCAAATAACCCATCTTTGGTGGAGGCTGTCGCGAGGGCCACGGCG
ATTGAGACGTCTTGTACCGGGGTGTTTTGGGCGTTTGCGCCGTGCGTAGC
GGTGGTGGGAGATTGCAGGTGGGGACGAACATACGAGAGCTTTGGGGATG
ACGCCGAGGCCGTAACTGCTAATGGTGTTGCACATATCAAGGGGCTACAA
GGTGCGACGATCGATATGTGGGGGACCCGGGTTTCGGGTACGGTGGCGGC
ATGTGCAAAGCATTATGTTGGTGATGGCGGGGTAGCCTTCGGAACAGGGC
AAATGGCGGAAAAGCTTTTGGATAGAGGCGACGTGCGATTGAATGAAGAG
GAGTTCAAAGAACATTTGAGGCCATATGTGGCGGCAGTCAAGGCGGGAGT
GATGAGCATTATGGTTTCGTTTAGTAGCGTGCACGGGAAGCAGATGCATG
CCCACCGAGAGCTTATTGAAGGGGTGCTGCGACAGCAGATGGGGTTCAAG
GGCTTGGTGGTATCAGATTGGGCAGGACATGACCAACTTCGGGAGGGGAG
CACACCGGTAGAGAAGTTGGCGTTATGCATCAACGCGGGAGTGGACATGA
TTATGATTCCGGAGCATTACAACGCCTACGCAGACCACATCCACGAGGCT
CTTACCGTCGGTCTCCTCCTTCCCGCCCGTATTGACGAGGCTTGTGCCCG
TGTCTTGCGTCTCAAGTACCAGCTGGGGCTCTTTGCATCTCCCACAGCCC
CACTTTCAAACCGAGCGTTGTTACCGCAAATACGATGCCCTGCCCACCTT
GCCTTGGCCCGTAGGGCAGTACAGCAATCAGTTGTCTTGCTGAAGAACAA
GGCGGGCGTGTTGCCGCTGAAGGGGGTTTCGTTGAAGCATCTTTTTGTGT
GCGGTAAAGGCGCAAACGATTTGGGTTTGACGTGCGGTGGCTGGTCCACA
TCCTGGCAGGGCGCGAGTGGAGCCACCACTGAGGGTACTCCCATCATGAA
GGCTCTAACGAAGGCACTGCCCAGAACCAGGGTGACCTATGACGTGTATG
GCAAGGGATTGGATGCAACCCTTCACCAGGTGGTCCTGTGTGTGGTATCA
GAGGATCCACCGTACGCCGAGTGGTTCGGAGATCGTAAAGATTTGGCGCT
GTCCGAGGAGGACCAGCAAGTGCTGGATGCCGTCACCCATAAGGGTATTC
CTGTTGTAGTAGTGCAGCTGGCAGGCCGTCCACTTCTTGCCCGCGATGAT
TGGGCAGGGACAGATGCATTGTTGCATGCGTGGCTGCCCGGCACCGAGGG
AGGATATGGGATTGCGGATGTACTGTTGGGCCATGTTAAACCTGTGGGGA
GAATGCCTGTGGGCTTGCCGAGGGACTTACCTGTAGCTGAGGCTACACGG
CAAATGTTTGCACATGGGTCTGGTTTGTCATACGTGGAGGAGGATTTACA
CTGCAGTGCCTCCATACCGCCGATTTTTCTTCAGCGAGAGTCCACATAGG
GATATTTCCATTTTAATGAAGCGGTCCCTTGGTTTCTAACAGTCTATATA
AAGTAAGATTGGCCTGTCTGTTGCGTTATTAGGGCCAATATCGATCTCTC
AAAAGAAAAATATCAAAATAAAATGATTAAAAGTAAAAATAAATAGAGAA
GAAGAGG
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protein sequence of NO09G02800.1

>NO09G02800.1-protein ID=NO09G02800.1-protein|Name=NO09G02800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=619bp
MADDCAKIKMQQQEACEEHIRQLLAQMTVEEKCMQMGQIDKAYVKDKYDL
STKGIGSVISGGSGQPFENSPLGFCDMIDDYQQYALKSRLGIPLLYGGDA
VHGMSLSKGTTLFPHNIGLGAANNPSLVEAVARATAIETSCTGVFWAFAP
CVAVVGDCRWGRTYESFGDDAEAVTANGVAHIKGLQGATIDMWGTRVSGT
VAACAKHYVGDGGVAFGTGQMAEKLLDRGDVRLNEEEFKEHLRPYVAAVK
AGVMSIMVSFSSVHGKQMHAHRELIEGVLRQQMGFKGLVVSDWAGHDQLR
EGSTPVEKLALCINAGVDMIMIPEHYNAYADHIHEALTVGLLLPARIDEA
CARVLRLKYQLGLFASPTAPLSNRALLPQIRCPAHLALARRAVQQSVVLL
KNKAGVLPLKGVSLKHLFVCGKGANDLGLTCGGWSTSWQGASGATTEGTP
IMKALTKALPRTRVTYDVYGKGLDATLHQVVLCVVSEDPPYAEWFGDRKD
LALSEEDQQVLDAVTHKGIPVVVVQLAGRPLLARDDWAGTDALLHAWLPG
TEGGYGIADVLLGHVKPVGRMPVGLPRDLPVAEATRQMFAHGSGLSYVEE
DLHCSASIPPIFLQREST*
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mRNA from alignment at chr9:828758..830975+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02800.1 ID=NO09G02800.1|Name=NO09G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2218bp|location=Sequence derived from alignment at chr9:828758..830975+ (Nannochloropsis oceanica)
AAAACCCACTTAGGGATCCTCAGGAGTAAATTTACGCCCAAAATGGCAGA TGACTGTGCCAAGATAAAGATGCAGCAGCAGGAAGCATGCGAAGAGCACA TTCGGCAACTCCTGGCGCAGATGACGGTCGAAGAGAAATGCATGCAAATG GGACAAATTGTAAGTTACCAAGCACACAGGGTGGAAGATGGGATGGCGGG CGTAGAGAGATGCCTAATAAAGGCTGCAAGGGAAAGAGATATACTTTTTG ACACTGTTGAATTTCCTCTGATTGGATGACTTCTCCCTCTAACCTAACCC TTCCAAAACACACAACACAGGACAAGGCCTACGTCAAGGACAAGTACGAC CTCAGCACCAAGGGTATTGGGAGTGTGATAAGTGGCGGCAGTGGGCAGCC CTTTGAAAACTCTCCCTTGGGCTTTTGCGACATGATTGACGACTACCAGC AGTACGCCCTAAAATCAAGACTTGGCATTCCCTTGCTTTACGGCGGCGAT GCGGTGCACGGCATGAGCTTATCTAAGGGTACCACGCTATTCCCCCACAA CATCGGTTTGGGAGCTGCAAATAACCCATCTTTGGTGGAGGCTGTCGCGA GGGCCACGGCGATTGAGACGTCTTGTACCGGGGTGTTTTGGGCGTTTGCG CCGTGCGTAGCGGTGGTGGGAGATTGCAGGTGGGGACGAACATACGAGAG CTTTGGGGATGACGCCGAGGCCGTAACTGCTAATGGTGTTGCACATATCA AGGGGCTACAAGGTGCGACGATCGATATGTGGGGGACCCGGGTTTCGGGT ACGGTGGCGGCATGTGCAAAGCATTATGTTGGTGATGGCGGGGTAGCCTT CGGAACAGGGCAAATGGCGGAAAAGCTTTTGGATAGAGGCGACGTGCGAT TGAATGAAGAGGAGTTCAAAGAACATTTGAGGCCATATGTGGCGGCAGTC AAGGCGGGAGTGATGAGCATTATGGTTTCGTTTAGTAGCGTGCACGGGAA GCAGATGCATGCCCACCGAGAGCTTATTGAAGGGGTGCTGCGACAGCAGA TGGGGTTCAAGGGCTTGGTGGTATCAGATTGGGCAGGACATGACCAACTT CGGGAGGGGAGCACACCGGTAGAGAAGTTGGCGTTATGCATCAACGCGGG AGTGGACATGATTATGATTCCGGAGCATTACAACGCCTACGCAGACCACA TCCACGAGGCTCTTACCGTCGGTCTCCTCCTTCCCGCCCGTATTGACGAG GCTTGTGCCCGTGTCTTGCGTCTCAAGTACCAGCTGGGGCTCTTTGCATC TCCCACAGCCCCACTTTCAAACCGAGCGTTGTTACCGCAAATACGATGCC CTGCCCACCTTGCCTTGGCCCGTAGGGCAGTACAGCAATCAGTTGTCTTG CTGAAGAACAAGGCGGGCGTGTTGCCGCTGAAGGGGGTTTCGTTGAAGCA TCTTTTTGTGTGCGGTAAAGGCGCAAACGATTTGGGTTTGACGTGCGGTG GCTGGTCCACATCCTGGCAGGGCGCGAGTGGAGCCACCACTGAGGGTACT CCCATCATGAAGGCTCTAACGAAGGCACTGCCCAGAACCAGGGTGACCTA TGACGTGTATGGCAAGGGATTGGATGCAACCCTTCACCAGGTGGTCCTGT GTGTGGTATCAGAGGATCCACCGTACGCCGAGTGGTTCGGAGATCGTAAA GATTTGGCGCTGTCCGAGGAGGACCAGCAAGTGCTGGATGCCGTCACCCA TAAGGGTATTCCTGTTGTAGTAGTGCAGCTGGCAGGCCGTCCACTTCTTG CCCGCGATGATTGGGCAGGGACAGATGCATTGTTGCATGCGTGGCTGCCC GGCACCGAGGGAGGATATGGGATTGCGGATGTACTGTTGGGCCATGTTAA ACCTGTGGGGAGAATGCCTGTGGGCTTGCCGAGGGACTTACCTGTAGCTG AGGCTACACGGCAAATGTTTGCACATGGGTCTGGTTTGTCATACGTGGAG GAGGATTTACACTGCAGTGCCTCCATACCGCCGATTTTTCTTCAGCGAGA GTCCACATAGGGATATTTCCATTTTAATGAAGCGGTCCCTTGGTTTCTAA CAGTCTATATAAAGTAAGATTGGCCTGTCTGTTGCGTTATTAGGGCCAAT ATCGATCTCTCAAAAGAAAAATATCAAAATAAAATGATTAAAAGTAAAAA TAAATAGAGAAGAAGAGG
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Coding sequence (CDS) from alignment at chr9:828758..830975+

>NO09G02800.1 ID=NO09G02800.1|Name=NO09G02800.1|organism=Nannochloropsis oceanica|type=CDS|length=1857bp|location=Sequence derived from alignment at chr9:828758..830975+ (Nannochloropsis oceanica)
ATGGCAGATGACTGTGCCAAGATAAAGATGCAGCAGCAGGAAGCATGCGA
AGAGCACATTCGGCAACTCCTGGCGCAGATGACGGTCGAAGAGAAATGCA
TGCAAATGGGACAAATTGACAAGGCCTACGTCAAGGACAAGTACGACCTC
AGCACCAAGGGTATTGGGAGTGTGATAAGTGGCGGCAGTGGGCAGCCCTT
TGAAAACTCTCCCTTGGGCTTTTGCGACATGATTGACGACTACCAGCAGT
ACGCCCTAAAATCAAGACTTGGCATTCCCTTGCTTTACGGCGGCGATGCG
GTGCACGGCATGAGCTTATCTAAGGGTACCACGCTATTCCCCCACAACAT
CGGTTTGGGAGCTGCAAATAACCCATCTTTGGTGGAGGCTGTCGCGAGGG
CCACGGCGATTGAGACGTCTTGTACCGGGGTGTTTTGGGCGTTTGCGCCG
TGCGTAGCGGTGGTGGGAGATTGCAGGTGGGGACGAACATACGAGAGCTT
TGGGGATGACGCCGAGGCCGTAACTGCTAATGGTGTTGCACATATCAAGG
GGCTACAAGGTGCGACGATCGATATGTGGGGGACCCGGGTTTCGGGTACG
GTGGCGGCATGTGCAAAGCATTATGTTGGTGATGGCGGGGTAGCCTTCGG
AACAGGGCAAATGGCGGAAAAGCTTTTGGATAGAGGCGACGTGCGATTGA
ATGAAGAGGAGTTCAAAGAACATTTGAGGCCATATGTGGCGGCAGTCAAG
GCGGGAGTGATGAGCATTATGGTTTCGTTTAGTAGCGTGCACGGGAAGCA
GATGCATGCCCACCGAGAGCTTATTGAAGGGGTGCTGCGACAGCAGATGG
GGTTCAAGGGCTTGGTGGTATCAGATTGGGCAGGACATGACCAACTTCGG
GAGGGGAGCACACCGGTAGAGAAGTTGGCGTTATGCATCAACGCGGGAGT
GGACATGATTATGATTCCGGAGCATTACAACGCCTACGCAGACCACATCC
ACGAGGCTCTTACCGTCGGTCTCCTCCTTCCCGCCCGTATTGACGAGGCT
TGTGCCCGTGTCTTGCGTCTCAAGTACCAGCTGGGGCTCTTTGCATCTCC
CACAGCCCCACTTTCAAACCGAGCGTTGTTACCGCAAATACGATGCCCTG
CCCACCTTGCCTTGGCCCGTAGGGCAGTACAGCAATCAGTTGTCTTGCTG
AAGAACAAGGCGGGCGTGTTGCCGCTGAAGGGGGTTTCGTTGAAGCATCT
TTTTGTGTGCGGTAAAGGCGCAAACGATTTGGGTTTGACGTGCGGTGGCT
GGTCCACATCCTGGCAGGGCGCGAGTGGAGCCACCACTGAGGGTACTCCC
ATCATGAAGGCTCTAACGAAGGCACTGCCCAGAACCAGGGTGACCTATGA
CGTGTATGGCAAGGGATTGGATGCAACCCTTCACCAGGTGGTCCTGTGTG
TGGTATCAGAGGATCCACCGTACGCCGAGTGGTTCGGAGATCGTAAAGAT
TTGGCGCTGTCCGAGGAGGACCAGCAAGTGCTGGATGCCGTCACCCATAA
GGGTATTCCTGTTGTAGTAGTGCAGCTGGCAGGCCGTCCACTTCTTGCCC
GCGATGATTGGGCAGGGACAGATGCATTGTTGCATGCGTGGCTGCCCGGC
ACCGAGGGAGGATATGGGATTGCGGATGTACTGTTGGGCCATGTTAAACC
TGTGGGGAGAATGCCTGTGGGCTTGCCGAGGGACTTACCTGTAGCTGAGG
CTACACGGCAAATGTTTGCACATGGGTCTGGTTTGTCATACGTGGAGGAG
GATTTACACTGCAGTGCCTCCATACCGCCGATTTTTCTTCAGCGAGAGTC
CACATAG
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Synonyms
Publications