|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:828758..830975 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G02800.1 vs.
Match: EWM27510.1 (glycoside hydrolase family 3 domain protein [Nannochloropsis gaditana]) HSP 1 Score: 892.9 bits (2306), Expect = 5.700e-256 Identity = 435/609 (71.43%), Postives = 512/609 (84.07%), Query Frame = 0
Query: 12 QQEACEEHIRQLLAQMTVEEKCMQMGQIDKAYVKDKYDLSTKGIGSVISGGSGQPFENSPLGFCDMIDDYQQYALKSRLGIPLLYGGDAVHGMSLSKGTTLFPHNIGLGAANNPSLVEAVARATAIETSCTGVFWAFAPCVAVVGDCRWGRTYESFGDDAEAVTANGVAHIKGLQGATIDMWGTRVSGTVAACAKHYVGDGGVAFGTGQMAEKLLDRGDVRLNEEEFKEHLRPYVAAVKAGVMSIMVSFSSVHGKQMHAHRELIEGVLRQQMGFKGLVVSDWAGHDQLREGSTPVEKLALCINAGVDMIMIPEHYNAYADHIHEALTVGLLLPARIDEACARVLRLKYQLGLFASPTAPL--SNRALLPQIRCPAHLALARRAVQQSVVLLKNKAGVLPLKGVSLKHLFVCGKGANDLGLTCGGWSTSWQGASGATTEGTPIMKALTKALPRTRVTYDVYGKGLDATLHQVVLCVVSEDPPYAEWFGDRKDLALSEEDQQVLDAVTHKGIPVVVVQLAGRPLLARDDWAGTDALLHAWLPGTEGGYGIADVLLGHVKPVGRMPVGLPRDLPVAEATRQMFAHGSGLSYVEEDLHCSASIPPIFLQREST 619
Q++ EE I +LL +MT +EK MQ+GQ+DKAY+K+K DL+T GIGSVISGGSGQPFENSP GFC+MI DYQ+ AL+SRL IPLLYGGDAVHGMSLSK TTLFPHNIGLGAAN+PSL+EA+ARATAIETSCTGV WAFAPCVAVV DCRWGRTYESFG+DA+AVTANGVAHIKGLQ WG R+ GTVAACAKHYVGDG V FGTGQM K+LDRGDVRL E EF+E LRPY AVKAGVMSIMVSFSSV GKQMHAHRELIEGVLRQ++GF+GLVVSDWAGH+QLR+G PVEKLALCINAGVDMIMIPEHY+AY +H+ EAL GL+ PAR+DEACARVLRLK++LGLF+ AP+ N+ALL ++RCPAHLALARRAVQ+S+VLLKN+A VLPL+ +L+HLFVCGKGA+DLGLTCGGWSTSWQGA G T GT I+ AL + LP T+VTYD G+G HQ+V+ VV+EDPPYAEWFGDR DL ++ ++Q +++ VT++G+PV+VVQLAGRPLL D+WA DALLHAWLPG+EGGYGI D+L G P G+MP+GLP DL V +A+R MFA G G++Y ++D+ ++P FLQRE T
Sbjct: 8 QEDINEEFILKLLHKMTRQEKLMQIGQVDKAYIKEKNDLATLGIGSVISGGSGQPFENSPAGFCEMIGDYQEAALRSRLKIPLLYGGDAVHGMSLSKETTLFPHNIGLGAANDPSLIEAIARATAIETSCTGVVWAFAPCVAVVRDCRWGRTYESFGEDADAVTANGVAHIKGLQDTAAQSWGVRIPGTVAACAKHYVGDGAVTFGTGQMGAKILDRGDVRLGEAEFEEQLRPYREAVKAGVMSIMVSFSSVQGKQMHAHRELIEGVLRQELGFQGLVVSDWAGHEQLRDGEGPVEKLALCINAGVDMIMIPEHYHAYQEHMQEALVGGLISPARLDEACARVLRLKHKLGLFSFQNAPIQDQNQALLAKVRCPAHLALARRAVQKSIVLLKNRACVLPLRKQTLRHLFVCGKGADDLGLTCGGWSTSWQGACGPITTGTTILSALREGLPDTQVTYDAAGEGFKPDQHQMVILVVAEDPPYAEWFGDRTDLYITAQEQLMVERVTNRGVPVIVVQLAGRPLLDCDNWARVDALLHAWLPGSEGGYGIVDILCGDACPDGKMPLGLPEDLDVPKASRCMFAKGRGMTY-DDDVVQGKNVPQPFLQREDT 615
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G02800.1 ID=NO09G02800.1|Name=NO09G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2057bp AAAACCCACTTAGGGATCCTCAGGAGTAAATTTACGCCCAAAATGGCAGA TGACTGTGCCAAGATAAAGATGCAGCAGCAGGAAGCATGCGAAGAGCACA TTCGGCAACTCCTGGCGCAGATGACGGTCGAAGAGAAATGCATGCAAATG GGACAAATTGACAAGGCCTACGTCAAGGACAAGTACGACCTCAGCACCAA GGGTATTGGGAGTGTGATAAGTGGCGGCAGTGGGCAGCCCTTTGAAAACT CTCCCTTGGGCTTTTGCGACATGATTGACGACTACCAGCAGTACGCCCTA AAATCAAGACTTGGCATTCCCTTGCTTTACGGCGGCGATGCGGTGCACGG CATGAGCTTATCTAAGGGTACCACGCTATTCCCCCACAACATCGGTTTGG GAGCTGCAAATAACCCATCTTTGGTGGAGGCTGTCGCGAGGGCCACGGCG ATTGAGACGTCTTGTACCGGGGTGTTTTGGGCGTTTGCGCCGTGCGTAGC GGTGGTGGGAGATTGCAGGTGGGGACGAACATACGAGAGCTTTGGGGATG ACGCCGAGGCCGTAACTGCTAATGGTGTTGCACATATCAAGGGGCTACAA GGTGCGACGATCGATATGTGGGGGACCCGGGTTTCGGGTACGGTGGCGGC ATGTGCAAAGCATTATGTTGGTGATGGCGGGGTAGCCTTCGGAACAGGGC AAATGGCGGAAAAGCTTTTGGATAGAGGCGACGTGCGATTGAATGAAGAG GAGTTCAAAGAACATTTGAGGCCATATGTGGCGGCAGTCAAGGCGGGAGT GATGAGCATTATGGTTTCGTTTAGTAGCGTGCACGGGAAGCAGATGCATG CCCACCGAGAGCTTATTGAAGGGGTGCTGCGACAGCAGATGGGGTTCAAG GGCTTGGTGGTATCAGATTGGGCAGGACATGACCAACTTCGGGAGGGGAG CACACCGGTAGAGAAGTTGGCGTTATGCATCAACGCGGGAGTGGACATGA TTATGATTCCGGAGCATTACAACGCCTACGCAGACCACATCCACGAGGCT CTTACCGTCGGTCTCCTCCTTCCCGCCCGTATTGACGAGGCTTGTGCCCG TGTCTTGCGTCTCAAGTACCAGCTGGGGCTCTTTGCATCTCCCACAGCCC CACTTTCAAACCGAGCGTTGTTACCGCAAATACGATGCCCTGCCCACCTT GCCTTGGCCCGTAGGGCAGTACAGCAATCAGTTGTCTTGCTGAAGAACAA GGCGGGCGTGTTGCCGCTGAAGGGGGTTTCGTTGAAGCATCTTTTTGTGT GCGGTAAAGGCGCAAACGATTTGGGTTTGACGTGCGGTGGCTGGTCCACA TCCTGGCAGGGCGCGAGTGGAGCCACCACTGAGGGTACTCCCATCATGAA GGCTCTAACGAAGGCACTGCCCAGAACCAGGGTGACCTATGACGTGTATG GCAAGGGATTGGATGCAACCCTTCACCAGGTGGTCCTGTGTGTGGTATCA GAGGATCCACCGTACGCCGAGTGGTTCGGAGATCGTAAAGATTTGGCGCT GTCCGAGGAGGACCAGCAAGTGCTGGATGCCGTCACCCATAAGGGTATTC CTGTTGTAGTAGTGCAGCTGGCAGGCCGTCCACTTCTTGCCCGCGATGAT TGGGCAGGGACAGATGCATTGTTGCATGCGTGGCTGCCCGGCACCGAGGG AGGATATGGGATTGCGGATGTACTGTTGGGCCATGTTAAACCTGTGGGGA GAATGCCTGTGGGCTTGCCGAGGGACTTACCTGTAGCTGAGGCTACACGG CAAATGTTTGCACATGGGTCTGGTTTGTCATACGTGGAGGAGGATTTACA CTGCAGTGCCTCCATACCGCCGATTTTTCTTCAGCGAGAGTCCACATAGG GATATTTCCATTTTAATGAAGCGGTCCCTTGGTTTCTAACAGTCTATATA AAGTAAGATTGGCCTGTCTGTTGCGTTATTAGGGCCAATATCGATCTCTC AAAAGAAAAATATCAAAATAAAATGATTAAAAGTAAAAATAAATAGAGAA GAAGAGG back to topprotein sequence of NO09G02800.1 >NO09G02800.1-protein ID=NO09G02800.1-protein|Name=NO09G02800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=619bp MADDCAKIKMQQQEACEEHIRQLLAQMTVEEKCMQMGQIDKAYVKDKYDL STKGIGSVISGGSGQPFENSPLGFCDMIDDYQQYALKSRLGIPLLYGGDA VHGMSLSKGTTLFPHNIGLGAANNPSLVEAVARATAIETSCTGVFWAFAP CVAVVGDCRWGRTYESFGDDAEAVTANGVAHIKGLQGATIDMWGTRVSGT VAACAKHYVGDGGVAFGTGQMAEKLLDRGDVRLNEEEFKEHLRPYVAAVK AGVMSIMVSFSSVHGKQMHAHRELIEGVLRQQMGFKGLVVSDWAGHDQLR EGSTPVEKLALCINAGVDMIMIPEHYNAYADHIHEALTVGLLLPARIDEA CARVLRLKYQLGLFASPTAPLSNRALLPQIRCPAHLALARRAVQQSVVLL KNKAGVLPLKGVSLKHLFVCGKGANDLGLTCGGWSTSWQGASGATTEGTP IMKALTKALPRTRVTYDVYGKGLDATLHQVVLCVVSEDPPYAEWFGDRKD LALSEEDQQVLDAVTHKGIPVVVVQLAGRPLLARDDWAGTDALLHAWLPG TEGGYGIADVLLGHVKPVGRMPVGLPRDLPVAEATRQMFAHGSGLSYVEE DLHCSASIPPIFLQREST* back to topmRNA from alignment at chr9:828758..830975+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G02800.1 ID=NO09G02800.1|Name=NO09G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2218bp|location=Sequence derived from alignment at chr9:828758..830975+ (Nannochloropsis oceanica) AAAACCCACTTAGGGATCCTCAGGAGTAAATTTACGCCCAAAATGGCAGA
TGACTGTGCCAAGATAAAGATGCAGCAGCAGGAAGCATGCGAAGAGCACA
TTCGGCAACTCCTGGCGCAGATGACGGTCGAAGAGAAATGCATGCAAATG
GGACAAATTGTAAGTTACCAAGCACACAGGGTGGAAGATGGGATGGCGGG
CGTAGAGAGATGCCTAATAAAGGCTGCAAGGGAAAGAGATATACTTTTTG
ACACTGTTGAATTTCCTCTGATTGGATGACTTCTCCCTCTAACCTAACCC
TTCCAAAACACACAACACAGGACAAGGCCTACGTCAAGGACAAGTACGAC
CTCAGCACCAAGGGTATTGGGAGTGTGATAAGTGGCGGCAGTGGGCAGCC
CTTTGAAAACTCTCCCTTGGGCTTTTGCGACATGATTGACGACTACCAGC
AGTACGCCCTAAAATCAAGACTTGGCATTCCCTTGCTTTACGGCGGCGAT
GCGGTGCACGGCATGAGCTTATCTAAGGGTACCACGCTATTCCCCCACAA
CATCGGTTTGGGAGCTGCAAATAACCCATCTTTGGTGGAGGCTGTCGCGA
GGGCCACGGCGATTGAGACGTCTTGTACCGGGGTGTTTTGGGCGTTTGCG
CCGTGCGTAGCGGTGGTGGGAGATTGCAGGTGGGGACGAACATACGAGAG
CTTTGGGGATGACGCCGAGGCCGTAACTGCTAATGGTGTTGCACATATCA
AGGGGCTACAAGGTGCGACGATCGATATGTGGGGGACCCGGGTTTCGGGT
ACGGTGGCGGCATGTGCAAAGCATTATGTTGGTGATGGCGGGGTAGCCTT
CGGAACAGGGCAAATGGCGGAAAAGCTTTTGGATAGAGGCGACGTGCGAT
TGAATGAAGAGGAGTTCAAAGAACATTTGAGGCCATATGTGGCGGCAGTC
AAGGCGGGAGTGATGAGCATTATGGTTTCGTTTAGTAGCGTGCACGGGAA
GCAGATGCATGCCCACCGAGAGCTTATTGAAGGGGTGCTGCGACAGCAGA
TGGGGTTCAAGGGCTTGGTGGTATCAGATTGGGCAGGACATGACCAACTT
CGGGAGGGGAGCACACCGGTAGAGAAGTTGGCGTTATGCATCAACGCGGG
AGTGGACATGATTATGATTCCGGAGCATTACAACGCCTACGCAGACCACA
TCCACGAGGCTCTTACCGTCGGTCTCCTCCTTCCCGCCCGTATTGACGAG
GCTTGTGCCCGTGTCTTGCGTCTCAAGTACCAGCTGGGGCTCTTTGCATC
TCCCACAGCCCCACTTTCAAACCGAGCGTTGTTACCGCAAATACGATGCC
CTGCCCACCTTGCCTTGGCCCGTAGGGCAGTACAGCAATCAGTTGTCTTG
CTGAAGAACAAGGCGGGCGTGTTGCCGCTGAAGGGGGTTTCGTTGAAGCA
TCTTTTTGTGTGCGGTAAAGGCGCAAACGATTTGGGTTTGACGTGCGGTG
GCTGGTCCACATCCTGGCAGGGCGCGAGTGGAGCCACCACTGAGGGTACT
CCCATCATGAAGGCTCTAACGAAGGCACTGCCCAGAACCAGGGTGACCTA
TGACGTGTATGGCAAGGGATTGGATGCAACCCTTCACCAGGTGGTCCTGT
GTGTGGTATCAGAGGATCCACCGTACGCCGAGTGGTTCGGAGATCGTAAA
GATTTGGCGCTGTCCGAGGAGGACCAGCAAGTGCTGGATGCCGTCACCCA
TAAGGGTATTCCTGTTGTAGTAGTGCAGCTGGCAGGCCGTCCACTTCTTG
CCCGCGATGATTGGGCAGGGACAGATGCATTGTTGCATGCGTGGCTGCCC
GGCACCGAGGGAGGATATGGGATTGCGGATGTACTGTTGGGCCATGTTAA
ACCTGTGGGGAGAATGCCTGTGGGCTTGCCGAGGGACTTACCTGTAGCTG
AGGCTACACGGCAAATGTTTGCACATGGGTCTGGTTTGTCATACGTGGAG
GAGGATTTACACTGCAGTGCCTCCATACCGCCGATTTTTCTTCAGCGAGA
GTCCACATAGGGATATTTCCATTTTAATGAAGCGGTCCCTTGGTTTCTAA
CAGTCTATATAAAGTAAGATTGGCCTGTCTGTTGCGTTATTAGGGCCAAT
ATCGATCTCTCAAAAGAAAAATATCAAAATAAAATGATTAAAAGTAAAAA
TAAATAGAGAAGAAGAGG back to topCoding sequence (CDS) from alignment at chr9:828758..830975+ >NO09G02800.1 ID=NO09G02800.1|Name=NO09G02800.1|organism=Nannochloropsis oceanica|type=CDS|length=1857bp|location=Sequence derived from alignment at chr9:828758..830975+ (Nannochloropsis oceanica) ATGGCAGATGACTGTGCCAAGATAAAGATGCAGCAGCAGGAAGCATGCGA AGAGCACATTCGGCAACTCCTGGCGCAGATGACGGTCGAAGAGAAATGCA TGCAAATGGGACAAATTGACAAGGCCTACGTCAAGGACAAGTACGACCTC AGCACCAAGGGTATTGGGAGTGTGATAAGTGGCGGCAGTGGGCAGCCCTT TGAAAACTCTCCCTTGGGCTTTTGCGACATGATTGACGACTACCAGCAGT ACGCCCTAAAATCAAGACTTGGCATTCCCTTGCTTTACGGCGGCGATGCG GTGCACGGCATGAGCTTATCTAAGGGTACCACGCTATTCCCCCACAACAT CGGTTTGGGAGCTGCAAATAACCCATCTTTGGTGGAGGCTGTCGCGAGGG CCACGGCGATTGAGACGTCTTGTACCGGGGTGTTTTGGGCGTTTGCGCCG TGCGTAGCGGTGGTGGGAGATTGCAGGTGGGGACGAACATACGAGAGCTT TGGGGATGACGCCGAGGCCGTAACTGCTAATGGTGTTGCACATATCAAGG GGCTACAAGGTGCGACGATCGATATGTGGGGGACCCGGGTTTCGGGTACG GTGGCGGCATGTGCAAAGCATTATGTTGGTGATGGCGGGGTAGCCTTCGG AACAGGGCAAATGGCGGAAAAGCTTTTGGATAGAGGCGACGTGCGATTGA ATGAAGAGGAGTTCAAAGAACATTTGAGGCCATATGTGGCGGCAGTCAAG GCGGGAGTGATGAGCATTATGGTTTCGTTTAGTAGCGTGCACGGGAAGCA GATGCATGCCCACCGAGAGCTTATTGAAGGGGTGCTGCGACAGCAGATGG GGTTCAAGGGCTTGGTGGTATCAGATTGGGCAGGACATGACCAACTTCGG GAGGGGAGCACACCGGTAGAGAAGTTGGCGTTATGCATCAACGCGGGAGT GGACATGATTATGATTCCGGAGCATTACAACGCCTACGCAGACCACATCC ACGAGGCTCTTACCGTCGGTCTCCTCCTTCCCGCCCGTATTGACGAGGCT TGTGCCCGTGTCTTGCGTCTCAAGTACCAGCTGGGGCTCTTTGCATCTCC CACAGCCCCACTTTCAAACCGAGCGTTGTTACCGCAAATACGATGCCCTG CCCACCTTGCCTTGGCCCGTAGGGCAGTACAGCAATCAGTTGTCTTGCTG AAGAACAAGGCGGGCGTGTTGCCGCTGAAGGGGGTTTCGTTGAAGCATCT TTTTGTGTGCGGTAAAGGCGCAAACGATTTGGGTTTGACGTGCGGTGGCT GGTCCACATCCTGGCAGGGCGCGAGTGGAGCCACCACTGAGGGTACTCCC ATCATGAAGGCTCTAACGAAGGCACTGCCCAGAACCAGGGTGACCTATGA CGTGTATGGCAAGGGATTGGATGCAACCCTTCACCAGGTGGTCCTGTGTG TGGTATCAGAGGATCCACCGTACGCCGAGTGGTTCGGAGATCGTAAAGAT TTGGCGCTGTCCGAGGAGGACCAGCAAGTGCTGGATGCCGTCACCCATAA GGGTATTCCTGTTGTAGTAGTGCAGCTGGCAGGCCGTCCACTTCTTGCCC GCGATGATTGGGCAGGGACAGATGCATTGTTGCATGCGTGGCTGCCCGGC ACCGAGGGAGGATATGGGATTGCGGATGTACTGTTGGGCCATGTTAAACC TGTGGGGAGAATGCCTGTGGGCTTGCCGAGGGACTTACCTGTAGCTGAGG CTACACGGCAAATGTTTGCACATGGGTCTGGTTTGTCATACGTGGAGGAG GATTTACACTGCAGTGCCTCCATACCGCCGATTTTTCTTCAGCGAGAGTC CACATAG back to top
|