NO09G02770.1, NO09G02770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02770.1
Unique NameNO09G02770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1872
Alignment locationchr9:821282..823153 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:821282..823153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02770.1 vs.
Match: EWM27518.1 (cupin 4 family protein [Nannochloropsis gaditana])

HSP 1 Score: 558.5 bits (1438), Expect = 2.400e-155
Identity = 303/564 (53.72%), Postives = 402/564 (71.28%), Query Frame = 0 
Query:   11 MVLF-VAFPTISVAAAAEDQHYQHPSHAHDDDNTVLSSLLGPIPGKESFFKEFWQAKPAVMRRHNPTFYRPIMQEGDLDAILVHSRTASLMDTLTGD---ADHPQNKHNDEAWKLVKRIRGENGEFWSSSPNASTRTQMLGLSPDATDVEVARAAFVQGYSLVVNHLEDKWHGTAQLALVFEEELGYRTSTNCYFTPARSQAFESHFDWMDAFVLQVEGSKRWRLYDALVDQPRPDMQFKPMTLEVGEPFIDFVLEAGDLLYLPSGLIHEALTEMEDGSGSSSLHLTVGVETTVIGSWESLLLEVLVVVTAAASEGNHDLPSSGAGLRDLRCPSGAAGERD-GEGKEHEMESASAMMSVFMSAIMTE---EGLRLGDMVALTLTHLATHERVLRRPVPLTPLMKRTKSRRRLGQLKELVTLVKEKSDIQGAWEWFMQKHKGTVPRSLAVFGKNFGGADRKEAAGKEMERRLATAAAAGT--VLSEEAKQGVHDALLCLEKALVDTVQAKAVLKHFDSVCQQDLATYQQQRKGILEQGVWQADIAAVDGQVDGPQVYGVGSHATT 565
            MV F + F  ++++  A +   + PS     DNTVLSS+LGP PGKE FF++FWQ KPAV+RRHNPTF++PIM++ DLDAILV S TAS++  L+      D  ++    ++W LVKRI+G +GE+WSS+P  +   Q+ GL  D+TD EVA AAF +GYSLV+N++EDK +GT++LAL FE ELGYRTS NCYFTP  SQAFE+HFDWMDAF+LQVEGSKRWRLYDALV+QPRPDMQFKP   ++GEP+IDFVLE GDLLYLPSG IHEAL E + G G+SSLHLTVG+ETTV+GSWESLLLEVL V++  ++E + DL S+ + +  L+C  G AGE    +      E+ S + S  ++  + +     LR GD++AL L  +A  ER LRRPVPL  LMKR    +RL  L ++V+L+KE+ D++GAW+ F+++ K +VPR+L VFGK+   +  + A G+EM+ RL  AAAA +   + +E +     AL CL+ AL D+VQ KA+  HF+ VCQ+DL   Q+QR+ +LE GVWQADI AVDG++   Q+YGVGS   T
Sbjct:    1 MVQFQLLFVWLALSFGAGEHQPRPPSTT--TDNTVLSSMLGPTPGKELFFRDFWQIKPAVIRRHNPTFFQPIMRQSDLDAILVQSSTASMLRGLSSSEPKCDQAEHDAESKSWTLVKRIKGVDGEWWSSTPATAALRQIFGLDDDSTDAEVAHAAFSRGYSLVINNIEDKLYGTSRLALAFEGELGYRTSINCYFTPPGSQAFEAHFDWMDAFILQVEGSKRWRLYDALVEQPRPDMQFKPSLHDIGEPYIDFVLEPGDLLYLPSGTIHEALNENDGGLGNSSLHLTVGIETTVLGSWESLLLEVLTVLSGGSAE-DRDLHSTWSNVSALQCSRGPAGENAIDDSPNLPFENVSQVFSSVVTPKIEDCNGATLRQGDLIALVLMQVAMQERALRRPVPLKNLMKRNGKYKRLTHLTDVVSLLKEQGDVRGAWDAFIRERK-SVPRNLEVFGKS--DSKDRPAHGEEMKNRLLGAAAAWSDIEIPDEIQDDFLKALDCLQGALSDSVQTKAIFSHFEHVCQRDLVQRQEQRELLLEAGVWQADINAVDGKLQASQIYGVGSQTPT 558
The following BLAST results are available for this feature:
BLAST of NO09G02770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27518.12.400e-15553.72cupin 4 family protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02770NO09G02770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02770.1NO09G02770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02770.1.cds1NO09G02770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02770.1 ID=NO09G02770.1|Name=NO09G02770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1872bp
ACCTCAGGACCCGCGACTCATCGCTTCCTTGACGATAATGAAGCGGAAAA
GAGCAATGAGAGCAATAATGGTGCTTTTTGTAGCCTTTCCCACCATCTCA
GTCGCCGCGGCCGCAGAGGACCAGCACTATCAACACCCATCGCACGCGCA
CGACGACGACAATACTGTGCTTTCCTCTTTGCTAGGTCCTATTCCTGGGA
AGGAATCTTTCTTCAAAGAGTTCTGGCAGGCGAAACCGGCCGTCATGCGC
CGACACAACCCGACTTTTTACCGACCCATTATGCAGGAAGGCGATCTGGA
CGCTATCTTGGTGCACAGCAGGACCGCATCTCTCATGGACACTTTGACCG
GAGACGCAGACCATCCTCAGAACAAACATAATGACGAAGCATGGAAACTT
GTCAAGCGCATCAGAGGTGAAAATGGAGAGTTTTGGTCCAGCAGCCCCAA
CGCCTCGACACGCACACAAATGCTAGGCCTGTCCCCTGACGCGACCGATG
TGGAAGTGGCGCGCGCCGCATTTGTCCAGGGGTATTCGTTGGTGGTGAAC
CATCTCGAGGACAAATGGCACGGTACGGCTCAACTTGCATTGGTATTTGA
GGAAGAGCTTGGCTATCGCACGTCGACCAACTGCTACTTCACCCCTGCCC
GAAGTCAAGCATTTGAATCTCATTTTGATTGGATGGACGCGTTTGTCCTC
CAGGTGGAAGGGTCCAAGCGCTGGCGGCTATACGATGCCTTGGTAGACCA
GCCCCGGCCAGACATGCAATTTAAGCCGATGACACTGGAGGTTGGAGAGC
CTTTTATTGACTTTGTCCTGGAAGCTGGCGATCTGTTGTATTTGCCGTCG
GGTTTGATCCACGAGGCCCTCACCGAGATGGAGGACGGGTCGGGGTCCTC
TTCCCTACATCTGACGGTTGGCGTGGAGACTACTGTAATAGGATCGTGGG
AATCTTTGTTGTTGGAAGTGTTGGTGGTGGTTACGGCTGCTGCCAGCGAG
GGCAACCACGATCTTCCTTCGTCTGGGGCGGGCTTGAGGGATTTGCGGTG
CCCGAGTGGGGCAGCAGGTGAGAGGGATGGAGAGGGCAAGGAGCACGAGA
TGGAGAGTGCATCGGCCATGATGTCGGTTTTCATGTCAGCCATTATGACT
GAGGAGGGGCTGCGACTAGGCGATATGGTGGCTCTCACGCTGACACACCT
GGCCACGCATGAAAGGGTGTTGCGTCGGCCGGTTCCCCTAACGCCGTTGA
TGAAGCGAACCAAGAGTAGGCGCCGTTTGGGTCAGCTTAAAGAGTTGGTA
ACTCTGGTTAAGGAGAAATCAGATATCCAGGGCGCTTGGGAATGGTTTAT
GCAGAAACATAAGGGCACCGTGCCACGAAGTCTTGCTGTCTTCGGGAAGA
ATTTCGGGGGCGCCGACCGGAAGGAGGCAGCTGGAAAAGAGATGGAGCGA
CGTCTTGCCACCGCCGCAGCGGCAGGAACGGTGTTATCGGAAGAAGCTAA
GCAGGGGGTTCACGATGCTTTACTGTGTTTGGAAAAAGCCTTAGTGGACA
CGGTGCAAGCGAAGGCTGTCTTGAAGCATTTTGATAGTGTGTGTCAGCAG
GATTTGGCTACATATCAGCAGCAGCGGAAAGGTATCTTGGAGCAAGGTGT
GTGGCAAGCAGACATTGCTGCGGTGGATGGACAGGTGGATGGACCGCAAG
TGTATGGTGTGGGTTCACATGCCACTACGTTTGCTGGTGTGTCGAGTGTG
TCGTAGCGTGGGAGGTTACGAGGGAGGAAAGACGGCATCTTTGAATATAT
TCCAAAGCTAGAAAAAGTGCGAATTTTAAACATCCAGAGCAGCAATGGAC
ATAAATATGTATTTCTATGCAA
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protein sequence of NO09G02770.1

>NO09G02770.1-protein ID=NO09G02770.1-protein|Name=NO09G02770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MKRKRAMRAIMVLFVAFPTISVAAAAEDQHYQHPSHAHDDDNTVLSSLLG
PIPGKESFFKEFWQAKPAVMRRHNPTFYRPIMQEGDLDAILVHSRTASLM
DTLTGDADHPQNKHNDEAWKLVKRIRGENGEFWSSSPNASTRTQMLGLSP
DATDVEVARAAFVQGYSLVVNHLEDKWHGTAQLALVFEEELGYRTSTNCY
FTPARSQAFESHFDWMDAFVLQVEGSKRWRLYDALVDQPRPDMQFKPMTL
EVGEPFIDFVLEAGDLLYLPSGLIHEALTEMEDGSGSSSLHLTVGVETTV
IGSWESLLLEVLVVVTAAASEGNHDLPSSGAGLRDLRCPSGAAGERDGEG
KEHEMESASAMMSVFMSAIMTEEGLRLGDMVALTLTHLATHERVLRRPVP
LTPLMKRTKSRRRLGQLKELVTLVKEKSDIQGAWEWFMQKHKGTVPRSLA
VFGKNFGGADRKEAAGKEMERRLATAAAAGTVLSEEAKQGVHDALLCLEK
ALVDTVQAKAVLKHFDSVCQQDLATYQQQRKGILEQGVWQADIAAVDGQV
DGPQVYGVGSHATTFAGVSSVS*
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mRNA from alignment at chr9:821282..823153+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02770.1 ID=NO09G02770.1|Name=NO09G02770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1872bp|location=Sequence derived from alignment at chr9:821282..823153+ (Nannochloropsis oceanica)
ACCTCAGGACCCGCGACTCATCGCTTCCTTGACGATAATGAAGCGGAAAA
GAGCAATGAGAGCAATAATGGTGCTTTTTGTAGCCTTTCCCACCATCTCA
GTCGCCGCGGCCGCAGAGGACCAGCACTATCAACACCCATCGCACGCGCA
CGACGACGACAATACTGTGCTTTCCTCTTTGCTAGGTCCTATTCCTGGGA
AGGAATCTTTCTTCAAAGAGTTCTGGCAGGCGAAACCGGCCGTCATGCGC
CGACACAACCCGACTTTTTACCGACCCATTATGCAGGAAGGCGATCTGGA
CGCTATCTTGGTGCACAGCAGGACCGCATCTCTCATGGACACTTTGACCG
GAGACGCAGACCATCCTCAGAACAAACATAATGACGAAGCATGGAAACTT
GTCAAGCGCATCAGAGGTGAAAATGGAGAGTTTTGGTCCAGCAGCCCCAA
CGCCTCGACACGCACACAAATGCTAGGCCTGTCCCCTGACGCGACCGATG
TGGAAGTGGCGCGCGCCGCATTTGTCCAGGGGTATTCGTTGGTGGTGAAC
CATCTCGAGGACAAATGGCACGGTACGGCTCAACTTGCATTGGTATTTGA
GGAAGAGCTTGGCTATCGCACGTCGACCAACTGCTACTTCACCCCTGCCC
GAAGTCAAGCATTTGAATCTCATTTTGATTGGATGGACGCGTTTGTCCTC
CAGGTGGAAGGGTCCAAGCGCTGGCGGCTATACGATGCCTTGGTAGACCA
GCCCCGGCCAGACATGCAATTTAAGCCGATGACACTGGAGGTTGGAGAGC
CTTTTATTGACTTTGTCCTGGAAGCTGGCGATCTGTTGTATTTGCCGTCG
GGTTTGATCCACGAGGCCCTCACCGAGATGGAGGACGGGTCGGGGTCCTC
TTCCCTACATCTGACGGTTGGCGTGGAGACTACTGTAATAGGATCGTGGG
AATCTTTGTTGTTGGAAGTGTTGGTGGTGGTTACGGCTGCTGCCAGCGAG
GGCAACCACGATCTTCCTTCGTCTGGGGCGGGCTTGAGGGATTTGCGGTG
CCCGAGTGGGGCAGCAGGTGAGAGGGATGGAGAGGGCAAGGAGCACGAGA
TGGAGAGTGCATCGGCCATGATGTCGGTTTTCATGTCAGCCATTATGACT
GAGGAGGGGCTGCGACTAGGCGATATGGTGGCTCTCACGCTGACACACCT
GGCCACGCATGAAAGGGTGTTGCGTCGGCCGGTTCCCCTAACGCCGTTGA
TGAAGCGAACCAAGAGTAGGCGCCGTTTGGGTCAGCTTAAAGAGTTGGTA
ACTCTGGTTAAGGAGAAATCAGATATCCAGGGCGCTTGGGAATGGTTTAT
GCAGAAACATAAGGGCACCGTGCCACGAAGTCTTGCTGTCTTCGGGAAGA
ATTTCGGGGGCGCCGACCGGAAGGAGGCAGCTGGAAAAGAGATGGAGCGA
CGTCTTGCCACCGCCGCAGCGGCAGGAACGGTGTTATCGGAAGAAGCTAA
GCAGGGGGTTCACGATGCTTTACTGTGTTTGGAAAAAGCCTTAGTGGACA
CGGTGCAAGCGAAGGCTGTCTTGAAGCATTTTGATAGTGTGTGTCAGCAG
GATTTGGCTACATATCAGCAGCAGCGGAAAGGTATCTTGGAGCAAGGTGT
GTGGCAAGCAGACATTGCTGCGGTGGATGGACAGGTGGATGGACCGCAAG
TGTATGGTGTGGGTTCACATGCCACTACGTTTGCTGGTGTGTCGAGTGTG
TCGTAGCGTGGGAGGTTACGAGGGAGGAAAGACGGCATCTTTGAATATAT
TCCAAAGCTAGAAAAAGTGCGAATTTTAAACATCCAGAGCAGCAATGGAC
ATAAATATGTATTTCTATGCAA
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Coding sequence (CDS) from alignment at chr9:821282..823153+

>NO09G02770.1 ID=NO09G02770.1|Name=NO09G02770.1|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr9:821282..823153+ (Nannochloropsis oceanica)
ATGAAGCGGAAAAGAGCAATGAGAGCAATAATGGTGCTTTTTGTAGCCTT
TCCCACCATCTCAGTCGCCGCGGCCGCAGAGGACCAGCACTATCAACACC
CATCGCACGCGCACGACGACGACAATACTGTGCTTTCCTCTTTGCTAGGT
CCTATTCCTGGGAAGGAATCTTTCTTCAAAGAGTTCTGGCAGGCGAAACC
GGCCGTCATGCGCCGACACAACCCGACTTTTTACCGACCCATTATGCAGG
AAGGCGATCTGGACGCTATCTTGGTGCACAGCAGGACCGCATCTCTCATG
GACACTTTGACCGGAGACGCAGACCATCCTCAGAACAAACATAATGACGA
AGCATGGAAACTTGTCAAGCGCATCAGAGGTGAAAATGGAGAGTTTTGGT
CCAGCAGCCCCAACGCCTCGACACGCACACAAATGCTAGGCCTGTCCCCT
GACGCGACCGATGTGGAAGTGGCGCGCGCCGCATTTGTCCAGGGGTATTC
GTTGGTGGTGAACCATCTCGAGGACAAATGGCACGGTACGGCTCAACTTG
CATTGGTATTTGAGGAAGAGCTTGGCTATCGCACGTCGACCAACTGCTAC
TTCACCCCTGCCCGAAGTCAAGCATTTGAATCTCATTTTGATTGGATGGA
CGCGTTTGTCCTCCAGGTGGAAGGGTCCAAGCGCTGGCGGCTATACGATG
CCTTGGTAGACCAGCCCCGGCCAGACATGCAATTTAAGCCGATGACACTG
GAGGTTGGAGAGCCTTTTATTGACTTTGTCCTGGAAGCTGGCGATCTGTT
GTATTTGCCGTCGGGTTTGATCCACGAGGCCCTCACCGAGATGGAGGACG
GGTCGGGGTCCTCTTCCCTACATCTGACGGTTGGCGTGGAGACTACTGTA
ATAGGATCGTGGGAATCTTTGTTGTTGGAAGTGTTGGTGGTGGTTACGGC
TGCTGCCAGCGAGGGCAACCACGATCTTCCTTCGTCTGGGGCGGGCTTGA
GGGATTTGCGGTGCCCGAGTGGGGCAGCAGGTGAGAGGGATGGAGAGGGC
AAGGAGCACGAGATGGAGAGTGCATCGGCCATGATGTCGGTTTTCATGTC
AGCCATTATGACTGAGGAGGGGCTGCGACTAGGCGATATGGTGGCTCTCA
CGCTGACACACCTGGCCACGCATGAAAGGGTGTTGCGTCGGCCGGTTCCC
CTAACGCCGTTGATGAAGCGAACCAAGAGTAGGCGCCGTTTGGGTCAGCT
TAAAGAGTTGGTAACTCTGGTTAAGGAGAAATCAGATATCCAGGGCGCTT
GGGAATGGTTTATGCAGAAACATAAGGGCACCGTGCCACGAAGTCTTGCT
GTCTTCGGGAAGAATTTCGGGGGCGCCGACCGGAAGGAGGCAGCTGGAAA
AGAGATGGAGCGACGTCTTGCCACCGCCGCAGCGGCAGGAACGGTGTTAT
CGGAAGAAGCTAAGCAGGGGGTTCACGATGCTTTACTGTGTTTGGAAAAA
GCCTTAGTGGACACGGTGCAAGCGAAGGCTGTCTTGAAGCATTTTGATAG
TGTGTGTCAGCAGGATTTGGCTACATATCAGCAGCAGCGGAAAGGTATCT
TGGAGCAAGGTGTGTGGCAAGCAGACATTGCTGCGGTGGATGGACAGGTG
GATGGACCGCAAGTGTATGGTGTGGGTTCACATGCCACTACGTTTGCTGG
TGTGTCGAGTGTGTCGTAG
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Synonyms
Publications