NO09G02760.1, NO09G02760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02760.1
Unique NameNO09G02760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2715
Alignment locationchr9:817894..820767 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:817894..820767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G02760.1 vs.
Match: WP_082632271.1 (hypothetical protein [Algoriphagus resistens])

HSP 1 Score: 86.7 bits (213), Expect = 3.300e-13
Identity = 65/247 (26.32%), Postives = 120/247 (48.58%), Query Frame = 0
Query:  201 HHIFVAAPLFNSFEFVEEFLESIESQSYPHVTVVVYDDSSDDGSADLVESLIPNLSYEVIILRGSERRGPSYAKWVLMRAIRRLAAPMDIVLFIDGDDKFFHDEVLDEVAATFRKKKPWFAYGRI------RGYYEEQCGPPPPIVYHPHNQSSSVRTSAWTYCHPRVFRAFLLHHFEEND-----FRDPASERWLLKYTDRQMVYKALELSGDKKVAFMDGERPHVYYRMTGNS--TVYMDQKIKN 435
            + + V     N+ ++++  L+S+ +QSY +  ++  DD+S+DGSA     ++P+ + +V++++   + G +Y    +  AI     P DIVL +DGDD    +EVL +V + +   + W  Y +       RG+ E    P   +V   H          W   H + FRA L  +    D      +D   + WL    D  +++  ++L+G  KV F D +  +VY  ++GN+  T+  + +I+N
Sbjct:  372 NRLVVITAFRNAGDYLKRNLQSLVNQSYSNYRIIYIDDASEDGSA----HILPDDNDQVMVIQNKAKCGSAYN---IHHAITTYCKPEDIVLLVDGDDWLPDNEVLAKVNSYYNAHECWVMYSQFQYEDGTRGFCEPFASPKDLLVQRSH----------WRSSHLKTFRAGLFQYIGNVDREYLCLKDEKGD-WLQSAVDAAIMFPLIDLAGFAKVRFYD-DILYVYNDVSGNNHHTLSREDQIQN 599          
The following BLAST results are available for this feature:
BLAST of NO09G02760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_082632271.13.300e-1326.32hypothetical protein [Algoriphagus resistens][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02760NO09G02760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02760.1NO09G02760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02760.1.cds1NO09G02760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02760.1.cds2NO09G02760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02760.1 ID=NO09G02760.1|Name=NO09G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2715bp
AAGACCCAAACAAACAGACAGCCAGGCCGTGCCAGTGGAAAGATATCGTC
GTACAGAGCCTCGATCACGGGATAATATCGCCACCCGGCCTAAAGGGAAT
TGTCCATCCTATTTAAGTGATTGCCTCCATCGACCAGTATGCAGGTCATC
CCTCTCCCCGCCCCGCTATTTTTTACTTCTACCCACCACTACTATAATGG
CCATAATGGCCAACATCTCGTGGGCCGAGCCAGAAGACTCCAATTCTATG
TCTGTAATGCCATCTTGGCGGTTTTCCTCCTTGTGTGCATGTACTTGCAT
AATTTGAGAGACCATGCGAGCGACTCTCGTCCCTTCTACGTCACACAAGC
CCTGCAGTCGGCAGGGATCCGGGGAGACAAGGGTATGAAGATCACTGAGA
CCGAACAGACAACAACAAATTCGGCTACTGAGGAAAGGAATTCTGCCGTA
TCTAGCTTTATCTCGACCATCAAGCAAGGGAAGATCTTAAATAGCTCAGG
CTTTTCCACAACTGCCTCGACCGCTGCGGTGGCCTCAGTCGATGGCAAGA
GCGACACAGCATCTACGTCTCCCTTTGACATCAAGAGAGCAACGTTGACC
GACTTTTCTGTCGCCTCTACCCTTGTGACCACCACACTGCAAATGGCGGA
CGACGCAGCTCTTAACGCCTTGAAGGTAACCTCGAACGTGCCTCCCTCTT
ATTGTATCACTGACGAAGACATCGCCTCTGCTCCTAAGCACCATATCTTT
GTGGCTGCCCCCCTCTTTAACTCGTTCGAGTTCGTGGAGGAATTCTTAGA
AAGCATTGAGAGCCAAAGCTACCCCCATGTAACTGTGGTAGTTTACGATG
ACTCTTCCGACGATGGCAGCGCCGACCTGGTGGAATCTCTAATCCCCAAC
TTATCGTACGAAGTAATCATCTTGCGCGGGAGCGAGCGCCGCGGTCCCTC
CTATGCCAAATGGGTGTTGATGCGGGCCATTCGCCGTCTCGCCGCACCTA
TGGACATTGTGCTTTTTATCGATGGAGACGACAAATTTTTCCACGACGAG
GTGCTGGACGAGGTGGCAGCCACTTTCCGGAAGAAAAAGCCCTGGTTTGC
GTACGGTCGCATCCGAGGTTACTACGAGGAGCAATGTGGCCCTCCCCCAC
CCATTGTCTACCACCCCCATAATCAGTCTTCCAGCGTGCGGACCTCTGCT
TGGACCTATTGCCACCCGCGGGTGTTTCGTGCGTTTTTGTTGCACCATTT
TGAGGAAAATGATTTCCGAGACCCGGCTTCGGAGAGGTGGTTACTAAAGT
ACACAGACAGGCAGATGGTTTACAAGGCTTTGGAACTTTCAGGGGATAAA
AAGGTGGCTTTTATGGATGGAGAACGGCCGCATGTTTATTACAGGATGAC
GGGAAATTCGACGGTTTACATGGATCAGAAGATTAAAAACAAGGATTTAA
ACTATGTCCAGGCGTTGATTGCCCAGACGGAAGGGTTGCCCGAACCGATC
CATATCATTAGTTGTGCGTACAAGAGGGTTTCGTTGCTAAAGGATGTGTT
GAAAGCGAATATTGACCTGCAAAATGTGGATAAGCGGCCTATTTATCTTC
ATGTTTGTAATAATGGGGATGATGCACAAGCGGTGGAGATTGAGTCGATC
CTTAAGGGCATAAAGGGCTTGGCTGGGTACCGCATGAGAACATTCCATGA
CAATCCTGGTGGGTTTGCCCGTTTCTACATGATGCAAGATGCGGTTAAAG
AATTTAACGTCGACTATTTCGTGATGTTGGACGACGATATCAAATTGCCT
GCGCCGAATGGTTTGCTGGACTTGATGGCTGAGGCGCGGCCGCAAGAGTA
TAATAGCTGGTGGGGAAGACACTTTCAAGGACCCATGGCTGACTACCAGT
CTTCTAGGCTCACTCCAACTGATTTGAAAGCGGGGAAAATAAGTGGGGTA
ACCAAGTTCCATTACGCTGGGACAGGGCTTTCGGTAATTGATGCTGACAT
TATCCGGTTTTATTTCCCGCTGATCGACAAGGTCCCCGAGGCGTACCGAA
AGGTGGAAGACCTCTGGCTCTCCTACGTGGTCCATCAAATTGGCTGGCGC
GTCCGTCGCATCGTCATGTCCGGTGTCAATTTTATGGAAGACATCAAACT
TAATCATGATGATATCTCCACGGAGCTGGTCAAGGCCACGGCCTTGTGGC
GGAAGCTCAAGCCAACTAAACTGGAAATGCTTGAGGATTTGCGGATATGT
GGGTGGAATGTTTAGGGAGGTTATGCATGCATGGGATATGGCTAAAAATT
GTTTGGGTGAGGACGTGGAAAACTCCATTCGTTACCTCCATACAATGATA
TCTCTAAAACTACATAATTTAGCTTTTTTATCAGCAGGTAGCACTTATTT
ATGCCTCTGTGCGCATTTATTTTGCTTGTCTCACGAGCCTGATAGGTAGA
GAATCAAGTCATTATATTTGTTAAGGAGGGGTCGAGATAACACCGTTGAC
CTACCACAAGTGAAAGTGCATTATGTGACTCAAAGTACAGAAATGTAGCA
AATGTAGAAAATGCGACCGCAATCGGCTTCTTACACTGCTGCAGTGGAGC
TACAGCACATGCAGTGAGGGAGGCACGAAGTGACCACAAGGTTCCGAAGC
AATCAAACTACTAATTAGAAAGACAATAAGCTCGAGATCAATGAAATTAT
ATGCTATTGGCCAAT
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protein sequence of NO09G02760.1

>NO09G02760.1-protein ID=NO09G02760.1-protein|Name=NO09G02760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=709bp
MQVIPLPAPLFFTSTHHYYNGHNGQHLVGRARRLQFYVCNAILAVFLLVC
MYLHNLRDHASDSRPFYVTQALQSAGIRGDKGMKITETEQTTTNSATEER
NSAVSSFISTIKQGKILNSSGFSTTASTAAVASVDGKSDTASTSPFDIKR
ATLTDFSVASTLVTTTLQMADDAALNALKVTSNVPPSYCITDEDIASAPK
HHIFVAAPLFNSFEFVEEFLESIESQSYPHVTVVVYDDSSDDGSADLVES
LIPNLSYEVIILRGSERRGPSYAKWVLMRAIRRLAAPMDIVLFIDGDDKF
FHDEVLDEVAATFRKKKPWFAYGRIRGYYEEQCGPPPPIVYHPHNQSSSV
RTSAWTYCHPRVFRAFLLHHFEENDFRDPASERWLLKYTDRQMVYKALEL
SGDKKVAFMDGERPHVYYRMTGNSTVYMDQKIKNKDLNYVQALIAQTEGL
PEPIHIISCAYKRVSLLKDVLKANIDLQNVDKRPIYLHVCNNGDDAQAVE
IESILKGIKGLAGYRMRTFHDNPGGFARFYMMQDAVKEFNVDYFVMLDDD
IKLPAPNGLLDLMAEARPQEYNSWWGRHFQGPMADYQSSRLTPTDLKAGK
ISGVTKFHYAGTGLSVIDADIIRFYFPLIDKVPEAYRKVEDLWLSYVVHQ
IGWRVRRIVMSGVNFMEDIKLNHDDISTELVKATALWRKLKPTKLEMLED
LRICGWNV*
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mRNA from alignment at chr9:817894..820767-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02760.1 ID=NO09G02760.1|Name=NO09G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2874bp|location=Sequence derived from alignment at chr9:817894..820767- (Nannochloropsis oceanica)
AAGACCCAAACAAACAGACAGCCAGGCCGTGCCAGTGGAAAGATATCGTC GTACAGAGCCTCGATCACGGGATAATATCGCCACCCGGCCTAAAGGGAAT TGTCCATCCTATTTAAGTGATTGCCTCCATCGACCAGTATGCAGGTCATC CCTCTCCCCGCCCCGCTATTTTTTACTTCTACCCACCACTACTATAATGG CCATAATGGCCAACATCTCGTGGGCCGAGCCAGAAGACTCCAATTCTATG TCTGTAATGCCATCTTGGCGGTTTTCCTCCTTGTGTGCATGTACTTGCAT AATTTGAGAGACCATGCGAGCGACTCTCGTCCCTTCTACGTCACACAAGC CCTGCAGTCGGCAGGGATCCGGGGAGACAAGGGTATGAAGATCACTGAGA CCGAACAGACAACAACAAATTCGGCTACTGAGGAAAGGAATTCTGCCGTA TCTAGCTTTATCTCGACCATCAAGCAAGGGAAGATCTTAAATAGCTCAGG CTTTTCCACAACTGCCTCGACCGCTGCGGTGGCCTCAGTCGATGGCAAGA GCGACACAGCATCTACGTCTCCCTTTGACATCAAGAGAGCAACGTTGACC GACTTTTCTGTCGCCTCTACCCTTGTGACCACCACACTGCAAATGGCGGA CGACGCAGCTCTTAACGCCTTGAAGGTAACCTCGAACGTGCCTCCCTCTT ATTGTATCACTGACGAAGACATCGCCTCTGCTCCTAAGCACCATATCTTT GTGGCTGCCCCCCTCTTTAACTCGTTCGAGTTCGTGGAGGAATTCTTAGA AAGCATTGAGAGCCAAAGCTACCCCCATGTAACTGTGGTAGTTTACGATG ACTCTTCCGACGATGGCAGCGCCGACCTGGTGGAATCTCTAATCCCCAAC TTATCGTACGAAGTAATCATCTTGCGCGGGAGCGAGCGCCGCGGTCCCTC CTATGCCAAATGGGTGTTGATGCGGGCCATTCGCCGTCTCGCCGCACCTA TGGACATTGTGCTTTTTATCGATGGAGACGACAAATTTTTCCACGACGAG GTGCTGGACGAGGTGGCAGCCACTTTCCGGAAGAAAAAGCCCTGGTTTGC GTACGGTCGCATCCGAGGTTACTACGAGGAGCAATGTGGCCCTCCCCCAC CCATTGTCTACCACCCCCATAATCAGTCTTCCAGCGTGCGGACCTCTGCT TGGACCTATTGCCACCCGCGGGTGTTTCGTGCGTTTTTGTTGCACCATTT TGAGGAAAATGATTTCCGAGACCCGGCTTCGGAGAGGTGGTTACTAAAGT ACACAGACAGGCAGATGGTTTACAAGGCTTTGGAACTTTCAGGGGATAAA AAGGTGGCTTTTATGGATGGAGAACGGCCGCATGTTTATTACAGGATGAC GGGAAATTCGACGGTTTACATGGATCAGAAGATTAAAAACAAGGATTTAA ACTATGTCCAGGCGTTGATTGCCCAGACGGAAGGGTTGCCCGAACCGATC CATATCATTAGTTGTGCGTACAAGAGGGTTTCGTTGCTAAAGGATGTGTT GAAAGCGAATATTGACCTGCAAAATGTGGATAAGCGGCCTATTTATCTTC ATGTTTGTAATAATGGGGATGATGCACAAGCGGTGGAGATTGAGTCGATC CTTAAGGGCATAAAGGGCTTGGCTGGGTACCGCATGAGAACATTCCATGA CAATCCTGGTGGGTTTGCCCGTTTCTACATGATGCAAGATGCGGTTAAAG AATTTAACGTCGACTATTTCGTGATGTTGGACGACGATATCAAATTGCCT GCGCCGAATGGTTTGCTGGACTTGATGGCTGAGGCGCGGCCGCAAGAGTA TAATAGCTGGTGGGGAAGACACTTTCAAGGACCCATGGCTGACTACCAGT CTTCTAGGCTCACTCCAACTGATTTGAAAGCGGGGAAAATAAGTGGGGTA ACCAAGTTCCATTACGCTGGGACAGGGCTTTCGGTAATTGATGCTGACAT TATCCGGTTTTATTTCCCGCTGATCGACAAGGTAGGGGAAAAGAAGATGA AGAAGAGAAGGAGGGTGAAGGGGCTGCCGCTAATCTTATTTAATCGGCTG ATATTCTCTGTGTCTTTCAATTCCTCCATATATCGCTCGCTCATCCCCTC CCAACCAACTACCCTCTGGTATCCCGCCAACATACATAAGGTCCCCGAGG CGTACCGAAAGGTGGAAGACCTCTGGCTCTCCTACGTGGTCCATCAAATT GGCTGGCGCGTCCGTCGCATCGTCATGTCCGGTGTCAATTTTATGGAAGA CATCAAACTTAATCATGATGATATCTCCACGGAGCTGGTCAAGGCCACGG CCTTGTGGCGGAAGCTCAAGCCAACTAAACTGGAAATGCTTGAGGATTTG CGGATATGTGGGTGGAATGTTTAGGGAGGTTATGCATGCATGGGATATGG CTAAAAATTGTTTGGGTGAGGACGTGGAAAACTCCATTCGTTACCTCCAT ACAATGATATCTCTAAAACTACATAATTTAGCTTTTTTATCAGCAGGTAG CACTTATTTATGCCTCTGTGCGCATTTATTTTGCTTGTCTCACGAGCCTG ATAGGTAGAGAATCAAGTCATTATATTTGTTAAGGAGGGGTCGAGATAAC ACCGTTGACCTACCACAAGTGAAAGTGCATTATGTGACTCAAAGTACAGA AATGTAGCAAATGTAGAAAATGCGACCGCAATCGGCTTCTTACACTGCTG CAGTGGAGCTACAGCACATGCAGTGAGGGAGGCACGAAGTGACCACAAGG TTCCGAAGCAATCAAACTACTAATTAGAAAGACAATAAGCTCGAGATCAA TGAAATTATATGCTATTGGCCAAT
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Coding sequence (CDS) from alignment at chr9:817894..820767-

>NO09G02760.1 ID=NO09G02760.1|Name=NO09G02760.1|organism=Nannochloropsis oceanica|type=CDS|length=2127bp|location=Sequence derived from alignment at chr9:817894..820767- (Nannochloropsis oceanica)
ATGCAGGTCATCCCTCTCCCCGCCCCGCTATTTTTTACTTCTACCCACCA
CTACTATAATGGCCATAATGGCCAACATCTCGTGGGCCGAGCCAGAAGAC
TCCAATTCTATGTCTGTAATGCCATCTTGGCGGTTTTCCTCCTTGTGTGC
ATGTACTTGCATAATTTGAGAGACCATGCGAGCGACTCTCGTCCCTTCTA
CGTCACACAAGCCCTGCAGTCGGCAGGGATCCGGGGAGACAAGGGTATGA
AGATCACTGAGACCGAACAGACAACAACAAATTCGGCTACTGAGGAAAGG
AATTCTGCCGTATCTAGCTTTATCTCGACCATCAAGCAAGGGAAGATCTT
AAATAGCTCAGGCTTTTCCACAACTGCCTCGACCGCTGCGGTGGCCTCAG
TCGATGGCAAGAGCGACACAGCATCTACGTCTCCCTTTGACATCAAGAGA
GCAACGTTGACCGACTTTTCTGTCGCCTCTACCCTTGTGACCACCACACT
GCAAATGGCGGACGACGCAGCTCTTAACGCCTTGAAGGTAACCTCGAACG
TGCCTCCCTCTTATTGTATCACTGACGAAGACATCGCCTCTGCTCCTAAG
CACCATATCTTTGTGGCTGCCCCCCTCTTTAACTCGTTCGAGTTCGTGGA
GGAATTCTTAGAAAGCATTGAGAGCCAAAGCTACCCCCATGTAACTGTGG
TAGTTTACGATGACTCTTCCGACGATGGCAGCGCCGACCTGGTGGAATCT
CTAATCCCCAACTTATCGTACGAAGTAATCATCTTGCGCGGGAGCGAGCG
CCGCGGTCCCTCCTATGCCAAATGGGTGTTGATGCGGGCCATTCGCCGTC
TCGCCGCACCTATGGACATTGTGCTTTTTATCGATGGAGACGACAAATTT
TTCCACGACGAGGTGCTGGACGAGGTGGCAGCCACTTTCCGGAAGAAAAA
GCCCTGGTTTGCGTACGGTCGCATCCGAGGTTACTACGAGGAGCAATGTG
GCCCTCCCCCACCCATTGTCTACCACCCCCATAATCAGTCTTCCAGCGTG
CGGACCTCTGCTTGGACCTATTGCCACCCGCGGGTGTTTCGTGCGTTTTT
GTTGCACCATTTTGAGGAAAATGATTTCCGAGACCCGGCTTCGGAGAGGT
GGTTACTAAAGTACACAGACAGGCAGATGGTTTACAAGGCTTTGGAACTT
TCAGGGGATAAAAAGGTGGCTTTTATGGATGGAGAACGGCCGCATGTTTA
TTACAGGATGACGGGAAATTCGACGGTTTACATGGATCAGAAGATTAAAA
ACAAGGATTTAAACTATGTCCAGGCGTTGATTGCCCAGACGGAAGGGTTG
CCCGAACCGATCCATATCATTAGTTGTGCGTACAAGAGGGTTTCGTTGCT
AAAGGATGTGTTGAAAGCGAATATTGACCTGCAAAATGTGGATAAGCGGC
CTATTTATCTTCATGTTTGTAATAATGGGGATGATGCACAAGCGGTGGAG
ATTGAGTCGATCCTTAAGGGCATAAAGGGCTTGGCTGGGTACCGCATGAG
AACATTCCATGACAATCCTGGTGGGTTTGCCCGTTTCTACATGATGCAAG
ATGCGGTTAAAGAATTTAACGTCGACTATTTCGTGATGTTGGACGACGAT
ATCAAATTGCCTGCGCCGAATGGTTTGCTGGACTTGATGGCTGAGGCGCG
GCCGCAAGAGTATAATAGCTGGTGGGGAAGACACTTTCAAGGACCCATGG
CTGACTACCAGTCTTCTAGGCTCACTCCAACTGATTTGAAAGCGGGGAAA
ATAAGTGGGGTAACCAAGTTCCATTACGCTGGGACAGGGCTTTCGGTAAT
TGATGCTGACATTATCCGGTTTTATTTCCCGCTGATCGACAAGGTCCCCG
AGGCGTACCGAAAGGTGGAAGACCTCTGGCTCTCCTACGTGGTCCATCAA
ATTGGCTGGCGCGTCCGTCGCATCGTCATGTCCGGTGTCAATTTTATGGA
AGACATCAAACTTAATCATGATGATATCTCCACGGAGCTGGTCAAGGCCA
CGGCCTTGTGGCGGAAGCTCAAGCCAACTAAACTGGAAATGCTTGAGGAT
TTGCGGATATGTGGGTGGAATGTTTAG
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Synonyms
Publications