NO09G02750.1, NO09G02750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02750.1
Unique NameNO09G02750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1743
Alignment locationchr9:808326..810068 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:808326..810068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02750.1 vs.
Match: EWM27513.1 (Zinc finger, CCCH-type [Nannochloropsis gaditana])

HSP 1 Score: 464.9 bits (1195), Expect = 3.600e-127
Identity = 276/585 (47.18%), Postives = 350/585 (59.83%), Query Frame = 0 
Query:    1 MGAFPRCRDHAEMAPFILSSSDLQSTFPSPPSSSPSSFFSSPSASSIPSIQVKTLYTVRGRVCARRPFAKCMLFFDLVDAKTRNQTRGDLVIRLECLLHAKGLAGLERAHVKKIMHDVHMGDVLEVDGFLDTRQEFLVLEAKEFRVVEAWKSL-QENPRVGFVLEWPSASQEEMKIEAEASASGAATTERASGAVAAAASVLLLAKESSSNANQ---EGHSSHTLGNNANKMSDNNNKDKSSLPPLLLENICKYWVANQGRCYQSKGGCPKFH---PPLSQLPNYYTAWLAKRQKERAHASQIEGDTHPPEDKTNKALRAVLFADWLVQTYGATTLAEGSGVVDVAGGKGDVSCRLWGEYGIRCTIVDPRATNFRKKVQQQVVRQRGGMEGIGRLPCIMPA--GCLENEEEEGGEDGEDG----------AQDQKRRLRRVLKECSLVVGMHPDQATDGIFEAALTYGKPVACVPCCVFAREFPHRRRPNMAKEKVEVEEKEEREKEKGKETNVVQEGAEEEGGEEGQEVESYEHLIEYLMAKPTPWPGVACQRKFLPFLGRNQVLFTLPPSLSSWTDGEEGGRE 567
            MG FPRC+ +AEM PF++ +S      P   S +PS   SS +   +P   VK  + VRGRVC+RRPFAKCMLFFDLVD  T N TRGD +IRLECLL ++GLA L++A  K++M+DV MGD+LEV+G LDT +EFLVLEA+  RV+E+WK+L + NPR+GF LEWP+ +   +       ++G  T      +V      +L+ KE S    +   E    + +       S N                                 CP +H      +Q   YY AWLAKR++ERA AS +EGD H PEDK+ KA RA+LFADWLV+TYG   LA GSGVVDVAGGKGDVSCRLWG+Y IRCTIVDPR T +RKKV++Q++RQ  G+EGI R+ C MP   G  ++ E EGG     G           + Q  RL  +L+ CS+VVGMHPDQATD  F+AA  + KPVAC+PCCVFAREFPHRRRP                            G +     +G+EVE+YEHL+EYL+AKP PW     +R+FLPFLGRNQV++ LPP LS   + EE  RE
Sbjct:    1 MGVFPRCKIYAEMEPFVVVTSP-----PLEASIAPS--LSSSTVPRVPPCDVK--FIVRGRVCSRRPFAKCMLFFDLVDVSTTNGTRGDQIIRLECLLRSEGLAKLQKAEAKRLMYDVSMGDILEVEGCLDTSREFLVLEARALRVIESWKALHKHNPRLGFALEWPTETPNVV-------SNGEHTL-----SVYTQDGCVLVNKEGSEEVIESLLEKVCKYWVATQGRCYSANG--------------------------------CPNYHPPLERHAQ---YYAAWLAKRRRERARASHLEGDGHSPEDKSKKAFRAILFADWLVKTYGRERLAAGSGVVDVAGGKGDVSCRLWGKYQIRCTIVDPRETQYRKKVRRQLLRQGRGLEGIERVQCTMPTDFGRTDDTEGEGGMASLQGEGLRERQGPTTESQAERLWDILRRCSMVVGMHPDQATDVCFDAAFAFKKPVACLPCCVFAREFPHRRRPRRG------------------------GGGDGACPGQGEEVETYEHLVEYLLAKPVPWAQGQSKREFLPFLGRNQVVYWLPPGLSDGVEREERWRE 505
The following BLAST results are available for this feature:
BLAST of NO09G02750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27513.13.600e-12747.18Zinc finger, CCCH-type [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02750NO09G02750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02750.1NO09G02750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02750.1.cds1NO09G02750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02750.1 ID=NO09G02750.1|Name=NO09G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp
ATGGGGGCTTTCCCGCGCTGCCGGGATCACGCAGAGATGGCGCCTTTTAT
TCTTTCCAGCTCCGATTTGCAGTCGACCTTCCCATCCCCCCCATCCTCCT
CCCCATCCTCCTTTTTCTCCTCTCCCTCCGCATCCTCCATCCCTTCGATA
CAAGTCAAGACGCTCTACACCGTCCGGGGCCGGGTTTGCGCTCGGCGACC
GTTTGCCAAGTGCATGCTGTTCTTTGACCTGGTGGATGCCAAGACACGCA
ATCAAACCCGCGGTGACCTCGTCATTCGTCTTGAATGCCTATTACATGCC
AAGGGACTGGCAGGGCTGGAGAGAGCTCATGTGAAAAAAATAATGCATGA
CGTGCATATGGGTGATGTGCTGGAGGTGGATGGGTTTCTCGATACGCGAC
AGGAATTTCTAGTGTTAGAGGCAAAGGAATTCCGGGTAGTTGAGGCGTGG
AAGTCCTTGCAAGAAAACCCCAGGGTCGGCTTTGTCTTGGAGTGGCCTTC
TGCATCCCAAGAAGAGATGAAAATCGAAGCGGAAGCATCAGCATCAGGAG
CAGCGACAACGGAACGAGCTTCGGGAGCAGTAGCAGCAGCAGCTTCAGTA
CTATTACTAGCTAAAGAGAGCAGCAGCAATGCAAATCAAGAGGGCCATAG
CAGTCACACCCTCGGCAACAATGCCAACAAAATGAGCGATAACAACAATA
AAGATAAAAGCTCGCTTCCTCCCCTCCTGCTTGAAAACATCTGTAAATAC
TGGGTCGCCAACCAGGGCCGCTGCTATCAATCAAAAGGCGGCTGTCCCAA
ATTCCATCCCCCCCTTTCTCAGCTTCCTAATTACTACACCGCCTGGCTTG
CCAAGCGTCAAAAAGAGCGAGCGCACGCCTCTCAAATCGAAGGAGACACC
CACCCTCCTGAAGATAAGACCAACAAAGCTCTTCGTGCCGTGTTATTTGC
AGATTGGCTGGTGCAGACCTACGGGGCGACGACGCTGGCGGAGGGGAGCG
GGGTGGTTGATGTGGCGGGAGGGAAGGGAGATGTGTCTTGTCGGCTGTGG
GGAGAGTATGGAATCAGGTGCACCATTGTCGATCCTCGTGCGACGAATTT
TAGGAAGAAGGTGCAGCAGCAGGTGGTGAGACAGAGGGGTGGGATGGAAG
GCATTGGGCGCTTGCCCTGCATCATGCCCGCGGGGTGTTTGGAGAATGAG
GAGGAGGAAGGGGGGGAGGACGGGGAGGATGGGGCGCAAGACCAGAAAAG
AAGGTTAAGGAGAGTCTTGAAAGAGTGTTCACTGGTCGTGGGCATGCACC
CTGACCAAGCGACAGATGGCATATTTGAGGCGGCGTTGACTTATGGCAAG
CCCGTAGCATGTGTGCCGTGTTGTGTGTTTGCACGAGAGTTCCCGCATCG
ACGGCGACCGAATATGGCGAAGGAGAAAGTGGAAGTGGAAGAAAAGGAAG
AGAGGGAGAAGGAGAAAGGGAAGGAGACCAACGTTGTGCAGGAGGGGGCG
GAGGAGGAAGGAGGGGAGGAAGGGCAGGAGGTAGAGAGTTACGAGCACTT
GATTGAGTATTTGATGGCGAAGCCAACGCCATGGCCAGGGGTGGCGTGTC
AGAGGAAGTTTTTGCCGTTTTTGGGGCGGAATCAGGTCTTATTTACGTTG
CCTCCTTCCCTGTCTTCTTGGACAGACGGGGAGGAGGGAGGGAGGGAGGA
CGAGGGGGAGGAGGCGAAGGGGGAGGTGGCGGGTGGATGTTAG
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protein sequence of NO09G02750.1

>NO09G02750.1-protein ID=NO09G02750.1-protein|Name=NO09G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MGAFPRCRDHAEMAPFILSSSDLQSTFPSPPSSSPSSFFSSPSASSIPSI
QVKTLYTVRGRVCARRPFAKCMLFFDLVDAKTRNQTRGDLVIRLECLLHA
KGLAGLERAHVKKIMHDVHMGDVLEVDGFLDTRQEFLVLEAKEFRVVEAW
KSLQENPRVGFVLEWPSASQEEMKIEAEASASGAATTERASGAVAAAASV
LLLAKESSSNANQEGHSSHTLGNNANKMSDNNNKDKSSLPPLLLENICKY
WVANQGRCYQSKGGCPKFHPPLSQLPNYYTAWLAKRQKERAHASQIEGDT
HPPEDKTNKALRAVLFADWLVQTYGATTLAEGSGVVDVAGGKGDVSCRLW
GEYGIRCTIVDPRATNFRKKVQQQVVRQRGGMEGIGRLPCIMPAGCLENE
EEEGGEDGEDGAQDQKRRLRRVLKECSLVVGMHPDQATDGIFEAALTYGK
PVACVPCCVFAREFPHRRRPNMAKEKVEVEEKEEREKEKGKETNVVQEGA
EEEGGEEGQEVESYEHLIEYLMAKPTPWPGVACQRKFLPFLGRNQVLFTL
PPSLSSWTDGEEGGREDEGEEAKGEVAGGC*
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mRNA from alignment at chr9:808326..810068-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02750.1 ID=NO09G02750.1|Name=NO09G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp|location=Sequence derived from alignment at chr9:808326..810068- (Nannochloropsis oceanica)
ATGGGGGCTTTCCCGCGCTGCCGGGATCACGCAGAGATGGCGCCTTTTAT
TCTTTCCAGCTCCGATTTGCAGTCGACCTTCCCATCCCCCCCATCCTCCT
CCCCATCCTCCTTTTTCTCCTCTCCCTCCGCATCCTCCATCCCTTCGATA
CAAGTCAAGACGCTCTACACCGTCCGGGGCCGGGTTTGCGCTCGGCGACC
GTTTGCCAAGTGCATGCTGTTCTTTGACCTGGTGGATGCCAAGACACGCA
ATCAAACCCGCGGTGACCTCGTCATTCGTCTTGAATGCCTATTACATGCC
AAGGGACTGGCAGGGCTGGAGAGAGCTCATGTGAAAAAAATAATGCATGA
CGTGCATATGGGTGATGTGCTGGAGGTGGATGGGTTTCTCGATACGCGAC
AGGAATTTCTAGTGTTAGAGGCAAAGGAATTCCGGGTAGTTGAGGCGTGG
AAGTCCTTGCAAGAAAACCCCAGGGTCGGCTTTGTCTTGGAGTGGCCTTC
TGCATCCCAAGAAGAGATGAAAATCGAAGCGGAAGCATCAGCATCAGGAG
CAGCGACAACGGAACGAGCTTCGGGAGCAGTAGCAGCAGCAGCTTCAGTA
CTATTACTAGCTAAAGAGAGCAGCAGCAATGCAAATCAAGAGGGCCATAG
CAGTCACACCCTCGGCAACAATGCCAACAAAATGAGCGATAACAACAATA
AAGATAAAAGCTCGCTTCCTCCCCTCCTGCTTGAAAACATCTGTAAATAC
TGGGTCGCCAACCAGGGCCGCTGCTATCAATCAAAAGGCGGCTGTCCCAA
ATTCCATCCCCCCCTTTCTCAGCTTCCTAATTACTACACCGCCTGGCTTG
CCAAGCGTCAAAAAGAGCGAGCGCACGCCTCTCAAATCGAAGGAGACACC
CACCCTCCTGAAGATAAGACCAACAAAGCTCTTCGTGCCGTGTTATTTGC
AGATTGGCTGGTGCAGACCTACGGGGCGACGACGCTGGCGGAGGGGAGCG
GGGTGGTTGATGTGGCGGGAGGGAAGGGAGATGTGTCTTGTCGGCTGTGG
GGAGAGTATGGAATCAGGTGCACCATTGTCGATCCTCGTGCGACGAATTT
TAGGAAGAAGGTGCAGCAGCAGGTGGTGAGACAGAGGGGTGGGATGGAAG
GCATTGGGCGCTTGCCCTGCATCATGCCCGCGGGGTGTTTGGAGAATGAG
GAGGAGGAAGGGGGGGAGGACGGGGAGGATGGGGCGCAAGACCAGAAAAG
AAGGTTAAGGAGAGTCTTGAAAGAGTGTTCACTGGTCGTGGGCATGCACC
CTGACCAAGCGACAGATGGCATATTTGAGGCGGCGTTGACTTATGGCAAG
CCCGTAGCATGTGTGCCGTGTTGTGTGTTTGCACGAGAGTTCCCGCATCG
ACGGCGACCGAATATGGCGAAGGAGAAAGTGGAAGTGGAAGAAAAGGAAG
AGAGGGAGAAGGAGAAAGGGAAGGAGACCAACGTTGTGCAGGAGGGGGCG
GAGGAGGAAGGAGGGGAGGAAGGGCAGGAGGTAGAGAGTTACGAGCACTT
GATTGAGTATTTGATGGCGAAGCCAACGCCATGGCCAGGGGTGGCGTGTC
AGAGGAAGTTTTTGCCGTTTTTGGGGCGGAATCAGGTCTTATTTACGTTG
CCTCCTTCCCTGTCTTCTTGGACAGACGGGGAGGAGGGAGGGAGGGAGGA
CGAGGGGGAGGAGGCGAAGGGGGAGGTGGCGGGTGGATGTTAG
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Coding sequence (CDS) from alignment at chr9:808326..810068-

>NO09G02750.1 ID=NO09G02750.1|Name=NO09G02750.1|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at chr9:808326..810068- (Nannochloropsis oceanica)
ATGGGGGCTTTCCCGCGCTGCCGGGATCACGCAGAGATGGCGCCTTTTAT
TCTTTCCAGCTCCGATTTGCAGTCGACCTTCCCATCCCCCCCATCCTCCT
CCCCATCCTCCTTTTTCTCCTCTCCCTCCGCATCCTCCATCCCTTCGATA
CAAGTCAAGACGCTCTACACCGTCCGGGGCCGGGTTTGCGCTCGGCGACC
GTTTGCCAAGTGCATGCTGTTCTTTGACCTGGTGGATGCCAAGACACGCA
ATCAAACCCGCGGTGACCTCGTCATTCGTCTTGAATGCCTATTACATGCC
AAGGGACTGGCAGGGCTGGAGAGAGCTCATGTGAAAAAAATAATGCATGA
CGTGCATATGGGTGATGTGCTGGAGGTGGATGGGTTTCTCGATACGCGAC
AGGAATTTCTAGTGTTAGAGGCAAAGGAATTCCGGGTAGTTGAGGCGTGG
AAGTCCTTGCAAGAAAACCCCAGGGTCGGCTTTGTCTTGGAGTGGCCTTC
TGCATCCCAAGAAGAGATGAAAATCGAAGCGGAAGCATCAGCATCAGGAG
CAGCGACAACGGAACGAGCTTCGGGAGCAGTAGCAGCAGCAGCTTCAGTA
CTATTACTAGCTAAAGAGAGCAGCAGCAATGCAAATCAAGAGGGCCATAG
CAGTCACACCCTCGGCAACAATGCCAACAAAATGAGCGATAACAACAATA
AAGATAAAAGCTCGCTTCCTCCCCTCCTGCTTGAAAACATCTGTAAATAC
TGGGTCGCCAACCAGGGCCGCTGCTATCAATCAAAAGGCGGCTGTCCCAA
ATTCCATCCCCCCCTTTCTCAGCTTCCTAATTACTACACCGCCTGGCTTG
CCAAGCGTCAAAAAGAGCGAGCGCACGCCTCTCAAATCGAAGGAGACACC
CACCCTCCTGAAGATAAGACCAACAAAGCTCTTCGTGCCGTGTTATTTGC
AGATTGGCTGGTGCAGACCTACGGGGCGACGACGCTGGCGGAGGGGAGCG
GGGTGGTTGATGTGGCGGGAGGGAAGGGAGATGTGTCTTGTCGGCTGTGG
GGAGAGTATGGAATCAGGTGCACCATTGTCGATCCTCGTGCGACGAATTT
TAGGAAGAAGGTGCAGCAGCAGGTGGTGAGACAGAGGGGTGGGATGGAAG
GCATTGGGCGCTTGCCCTGCATCATGCCCGCGGGGTGTTTGGAGAATGAG
GAGGAGGAAGGGGGGGAGGACGGGGAGGATGGGGCGCAAGACCAGAAAAG
AAGGTTAAGGAGAGTCTTGAAAGAGTGTTCACTGGTCGTGGGCATGCACC
CTGACCAAGCGACAGATGGCATATTTGAGGCGGCGTTGACTTATGGCAAG
CCCGTAGCATGTGTGCCGTGTTGTGTGTTTGCACGAGAGTTCCCGCATCG
ACGGCGACCGAATATGGCGAAGGAGAAAGTGGAAGTGGAAGAAAAGGAAG
AGAGGGAGAAGGAGAAAGGGAAGGAGACCAACGTTGTGCAGGAGGGGGCG
GAGGAGGAAGGAGGGGAGGAAGGGCAGGAGGTAGAGAGTTACGAGCACTT
GATTGAGTATTTGATGGCGAAGCCAACGCCATGGCCAGGGGTGGCGTGTC
AGAGGAAGTTTTTGCCGTTTTTGGGGCGGAATCAGGTCTTATTTACGTTG
CCTCCTTCCCTGTCTTCTTGGACAGACGGGGAGGAGGGAGGGAGGGAGGA
CGAGGGGGAGGAGGCGAAGGGGGAGGTGGCGGGTGGATGTTAG
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Synonyms
Publications