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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:804531..808167 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G02710.1 vs.
Match: EWM27523.1 (dna rna non-specific nuclease [Nannochloropsis gaditana]) HSP 1 Score: 457.2 bits (1175), Expect = 5.500e-125 Identity = 246/396 (62.12%), Postives = 286/396 (72.22%), Query Frame = 0
Query: 9 RRRSSTIAASIVAGSSSILLTSMLTHDDQDAAGFVAHAQAHQANDLHKWSHVGLPAFDTTYIFRENFVICYDSRTRNPKWVMERLTKQTCTGEADRRVVGFYEEDSIDPRFRSKNSDYLNSGYDRGHMASAANNRSSTQTMQETFSLANVSPQVGGGFNRDYWARVEKFTRDLTKHCDAVYLVSGPLFLP-QRRDTIITSTSNTASKAKFIMTYELLGEAPSLVAVPTHFFKCVFAEMRNGRKVVAAFVLPNAPIHADVPLTRFLVPLANLEQAAGFRMFAQALTEEEREEVDARVLGLRGVGAGNGGEEVRIEGMLTNGISDDALVVRRGGREGGGGRGGGGGGGGIKLNLDAPEHLCDVVLCQLPPEKFWQVNGNKKNREKRKNRDDSGGVNAE 404
+R T+ S V GS +ILL++ D +D F A DL KWS VGLP +TTY+FRENFV+CYD+RTRNP+WVMER+T+ TC GEADRRVV FYEE+SIDP FRSKNSDYLNSGYDRGHMA AANNRSS +TM+ETF+LANVSPQVGGGFNRDYWARVEKFTRDLTK C +VYLVSGPLFLP Q++ TSN SKA+FIM+YELLG+ P LVAVPTHFFKCV AE+ GR +VAAFVLPNAPI +VPLTRFLVPL NLEQAAG R FAQAL++E++E +D RV LRG GGEE I G+L ALV R G G G G GG++LNL PEHLC+ + CQLPPE+FW++ + R GG E
Sbjct: 10 KRHVKTLMTS-VGGSLAILLST----DREDRKRFAQAQAPGMARDLDKWSQVGLPGGETTYMFRENFVVCYDARTRNPRWVMERITRDTCRGEADRRVVSFYEEESIDPSFRSKNSDYLNSGYDRGHMAPAANNRSSVKTMEETFTLANVSPQVGGGFNRDYWARVEKFTRDLTKRCQSVYLVSGPLFLPRQKQAGDAPFTSNPTSKARFIMSYELLGDPPGLVAVPTHFFKCVLAEV-EGRYLVAAFVLPNAPIPPEVPLTRFLVPLENLEQAAGVRFFAQALSQEDKERLDGRVQLLRGT---LGGEEGGIAGLLAAQAPSTALVTREGYGHDSGRWGKGRNKGGLRLNLAGPEHLCEALACQLPPERFWELTDGRAGGGNGGGRRKRGGDTTE 396
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G02710.1 ID=NO09G02710.1|Name=NO09G02710.1|organism=Nannochloropsis oceanica|type=mRNA|length=3436bp ATGCCACTCTCACAAGTTTTGCTTTTGTTTGATATATGTTTGTCCTCTGT TCTTGCTTATTACTGTGCTTTAGGCTTTGCCATTATCCAGTTCACCAGAA TTGACCCAAATAGACGGATAATCCTACCCTCCCTCAGACCCCTATCCTAG ACGTAAAGAGGTAAACTGACCAAGGCATCGATGTACGGAATGATAACAAC GCGCGTAAGCAAATAAAACAGCACGCCGAGGCCAATCGAAATCGGCAATG CCGGCAGCGCCTTTCGAAAGACACTCAGCAACACAAGTGTTGCGCCCAAG CCCGAAATAATGACGAGGAAACAGGCCGCGCAAGTCGCAAACCCATACAA AGCCGCCTTGCCCACCAGAACACTGTAAAAAACAAAATCCCCCAAGCCCA GCTTAATGCTTCGCTCCTCCGGCGCTCCTCTTCCTCCGTGGTGCTCCTGC GAGGAGGACGACGATAAAGGATAGTCAGCCGTGCCACTGTTTCCGCCCAC CCCTCCATTTCCTCGTTCGCCACTACCCTCCGCATCCCCCTCCTCCTGTG GAGTACCCCCTACTTCGAGCAAGCTAGAATTGATCCGACCTCCCCGCAAC TGCTGTTGTTGTTGTTTGTGTGGCTGTTGCTGCTGCTGATGGTGACGGTG GCGACGGTCGAGATGATCTCCACCCGGGCTGCTGTGCGAACTGTCCAACA GCGGATCGAGAGGAGAAGGCGGATTGTTGCAATGCAAGCTGCTCGCCGGG CCCGAAGGTATCAACGCCGCAGGCCCCCCATCTTCCCTACTCACATCGCG CACAGGCGTCTGTAGATCCGTTCTTTGCATTCCTTCCACCCTTGTGTCTG CTGCTACTGCTATTCCTCCTGTCCTCCCAACGAGTGGAGGCGGCACCCTG TGATGGTGCCGTGCATGAGCAGGCAACTCCGCCTCGTAGAGCAGACCAGG CATGGTAGGAGCGTCGCGCTCTTGCATCAACCCTACCAAATACTTCAATG GTCCACAGGGTGTAAGCACGGCACATAAATCATACAGGGCCAAGACCACC AACAAGGCCCAGCCTGTCCATTCCTCGAACCTCGACAACTGCCAGGCCAT TATCACAGAAATCATAACCAAATACCCTTGGGTCACCCAGGTTGGGATCC CCTTCTGATAAAATATGGCAGCCACGCCGACAAAAGCGAAATTGTACAGA ACAGCGACAAATGTGAAGTAATCACATGGCAAATCCCATCGTATCAAAGC CGTGTACCACAACAACCCCCCATCAGCCCCAACAGCATCGTGCTACTAAA CGCCATGTATCCAAACAAGCACTTCATGCACCGAAACTTATAAAGCAACA CCACCAGAATGGTCGCCCCACAAATAACCCCAACTATGGTCAAAGCATTG ATGAGTGACTTGCCGAGCTTGACGGAATTGCTGTCCCCCCCATTCCCGTC TGCGTCCCCGTCGTTTATCGCATATACACTCACTCCTTGGTCTTCCGTCG CAAATTCCACATTCACCACCACCAGGCTCGCTAGAAACATGGTCAAGGCC ACGGGCTTCAGGACTGCCCAGAAGGAGTTGGCAGAGTACAGGACGTCCTC AATGTCGAGGCCGTCGGGTTGTGTGTGAGCCGGGTCACGGGAAGGAGTTG AGGTACGCTCGTCGCTGCTGCTACTGTCGAAGGAAGTCGGTGGTGGCGGG AAAGGGGCAGGCAGCGGGGGAGGTGCTGGTCGTGCCATGGCTATCGCTGT GTTTTAGTTTGGGCAGGTTGAAGCTTATGTGGGGTGGCAGGGGTGAAAGT GTAAAAACATGGGCACGATGCAAGCATCGCTGAACAGGGTATACAGCTTC CGAGATTGCGTCAACGCCAACAACGCCAACAATAGGGCGTTACATAGACA CTCAACTGGCACAGAAACACAAACAGACAGGTTGTTGTTGGCCTGTGTAG TTTGCGTACAGAGGGCAGGCACATTTGGGTTCAAAAGCAGGAGAGAGACT TTGGCATCATCCACGCGTGCACAATGGCAGCTTTTTTTACGCGTGCACGA CGACGATCCTCGACAATAGCGGCTTCCATCGTGGCCGGTAGTTCGTCGAT TCTTCTGACTTCGATGCTCACCCACGACGACCAGGATGCTGCAGGATTTG TAGCCCACGCCCAAGCCCACCAAGCAAACGATCTCCACAAATGGTCCCAC GTCGGGCTGCCTGCCTTCGACACAACTTACATTTTTCGAGAAAACTTTGT CATCTGTTACGACTCCCGCACGCGGAATCCGAAATGGGTAATGGAACGCC TGACCAAACAAACATGCACGGGGGAGGCGGACCGTCGCGTGGTGGGGTTC TACGAGGAGGACAGCATCGATCCTCGCTTTCGCAGCAAAAATAGCGACTA CCTGAATTCAGGGTATGATCGTGGACATATGGCATCAGCAGCCAACAACA GAAGCTCGACACAGACCATGCAAGAAACGTTTTCCCTCGCGAATGTGTCG CCGCAGGTCGGCGGGGGATTCAATCGAGATTATTGGGCTAGAGTCGAGAA ATTTACGAGGGATCTGACCAAGCATTGCGACGCTGTCTACCTCGTCTCTG GTCCTCTATTTCTCCCCCAGCGACGCGATACCATCATCACCAGCACCTCC AATACAGCTTCCAAAGCCAAATTCATCATGACCTATGAATTGCTGGGAGA GGCCCCCAGCCTCGTGGCGGTCCCCACGCACTTCTTCAAATGTGTGTTTG CCGAGATGCGGAATGGCCGAAAAGTCGTCGCTGCTTTTGTCTTGCCCAAT GCACCCATACACGCTGACGTGCCTTTGACAAGGTTTTTGGTTCCGCTGGC AAATCTGGAGCAGGCGGCAGGCTTCCGAATGTTTGCCCAGGCTCTGACAG AGGAGGAGCGGGAGGAGGTGGATGCACGAGTCCTCGGTCTGAGAGGAGTT GGTGCAGGAAATGGAGGCGAGGAGGTAAGGATTGAGGGCATGTTGACGAA TGGCATATCGGACGATGCGTTGGTAGTACGTCGTGGTGGCCGTGAAGGAG GAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGGATAAAGCTGAATCTC GATGCGCCTGAGCATCTGTGTGATGTTGTGTTATGCCAATTACCTCCGGA AAAATTTTGGCAGGTGAATGGAAATAAAAAAAACAGGGAAAAGAGGAAGA ATAGAGATGATTCTGGTGGTGTTAATGCTGAAAAGGGTGAAGAGTGGGCG TCGCCGGGTTTCCCCTCCATGGTCCCCTCATCGTGGTGGTCGGGAGGAAG GACAGCGTAAAAAATGGACACTTAAGCTCACGGCCTGAATGAAAAGCTTT GAAAAAGATCTCTCATTAATGATCAATGCGAGACTCTAAGATGAAGAATT GTATGATCAAAAATTATCCAAAATTATTACATCACC back to topprotein sequence of NO09G02710.1 >NO09G02710.1-protein ID=NO09G02710.1-protein|Name=NO09G02710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp MAAFFTRARRRSSTIAASIVAGSSSILLTSMLTHDDQDAAGFVAHAQAHQ ANDLHKWSHVGLPAFDTTYIFRENFVICYDSRTRNPKWVMERLTKQTCTG EADRRVVGFYEEDSIDPRFRSKNSDYLNSGYDRGHMASAANNRSSTQTMQ ETFSLANVSPQVGGGFNRDYWARVEKFTRDLTKHCDAVYLVSGPLFLPQR RDTIITSTSNTASKAKFIMTYELLGEAPSLVAVPTHFFKCVFAEMRNGRK VVAAFVLPNAPIHADVPLTRFLVPLANLEQAAGFRMFAQALTEEEREEVD ARVLGLRGVGAGNGGEEVRIEGMLTNGISDDALVVRRGGREGGGGRGGGG GGGGIKLNLDAPEHLCDVVLCQLPPEKFWQVNGNKKNREKRKNRDDSGGV NAEKGEEWASPGFPSMVPSSWWSGGRTA* back to topmRNA from alignment at chr9:804531..808167+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G02710.1 ID=NO09G02710.1|Name=NO09G02710.1|organism=Nannochloropsis oceanica|type=mRNA|length=3637bp|location=Sequence derived from alignment at chr9:804531..808167+ (Nannochloropsis oceanica) ATGCCACTCTCACAAGTTTTGCTTTTGTTTGATATATGTTTGTCCTCTGT
TCTTGCTTATTACTGTGCTTTAGGCTTTGCCATTATCCAGTTCACCAGAA
TTGACCCAAATAGACGGATAATCCTACCCTCCCTCAGACCCCTATCCTAG
ACGTAAAGAGGTAAACTGACCAAGGCATCGATGTACGGAATGATAACAAC
GCGCGTAAGCAAATAAAACAGCACGCCGAGGCCAATCGAAATCGGCAATG
CCGGCAGCGCCTTTCGAAAGACACTCAGCAACACAAGTGTTGCGCCCAAG
CCCGAAATAATGACGAGGAAACAGGCCGCGCAAGTCGCAAACCCATACAA
AGCCGCCTTGCCCACCAGAACACTGTAAAAAACAAAATCCCCCAAGCCCA
GCTTAATGCTTCGCTCCTCCGGCGCTCCTCTTCCTCCGTGGTGCTCCTGC
GAGGAGGACGACGATAAAGGATAGTCAGCCGTGCCACTGTTTCCGCCCAC
CCCTCCATTTCCTCGTTCGCCACTACCCTCCGCATCCCCCTCCTCCTGTG
GAGTACCCCCTACTTCGAGCAAGCTAGAATTGATCCGACCTCCCCGCAAC
TGCTGTTGTTGTTGTTTGTGTGGCTGTTGCTGCTGCTGATGGTGACGGTG
GCGACGGTCGAGATGATCTCCACCCGGGCTGCTGTGCGAACTGTCCAACA
GCGGATCGAGAGGAGAAGGCGGATTGTTGCAATGCAAGCTGCTCGCCGGG
CCCGAAGGTATCAACGCCGCAGGCCCCCCATCTTCCCTACTCACATCGCG
CACAGGCGTCTGTAGATCCGTTCTTTGCATTCCTTCCACCCTTGTGTCTG
CTGCTACTGCTATTCCTCCTGTCCTCCCAACGAGTGGAGGCGGCACCCTG
TGATGGTGCCGTGCATGAGCAGGCAACTCCGCCTCGTAGAGCAGACCAGG
CATGGTAGGAGCGTCGCGCTCTTGCATCAACCCTACCAAATACTTCAATG
GTCCACAGGGTGTAAGCACGGCACATAAATCATACAGGGCCAAGACCACC
AACAAGGCCCAGCCTGTCCATTCCTCGAACCTCGACAACTGCCAGGCCAT
TATCACAGAAATCATAACCAAATACCCTTGGGTCACCCAGGTTGGGATCC
CCTTCTGATAAAATATGGCAGCCACGCCGACAAAAGCGAAATTGTACAGA
ACAGCGACAAATGTGAAGTAATCACATGGCAAATCCCATCGTATCAAAGC
CGTGTACCACAACAACCCCCCATCAGCCCCAACAGCATCGTGCTACTAAA
CGCCATGTATCCAAACAAGCACTTCATGCACCGAAACTTATAAAGCAACA
CCACCAGAATGGTCGCCCCACAAATAACCCCAACTATGGTCAAAGCATTG
ATGAGTGACTTGCCGAGCTTGACGGAATTGCTGTCCCCCCCATTCCCGTC
TGCGTCCCCGTCGTTTATCGCATATACACTCACTCCTTGGTCTTCCGTCG
CAAATTCCACATTCACCACCACCAGGCTCGCTAGAAACATGGTCAAGGCC
ACGGGCTTCAGGACTGCCCAGAAGGAGTTGGCAGAGTACAGGACGTCCTC
AATGTCGAGGCCGTCGGGTTGTGTGTGAGCCGGGTCACGGGAAGGAGTTG
AGGTACGCTCGTCGCTGCTGCTACTGTCGAAGGAAGTCGGTGGTGGCGGG
AAAGGGGCAGGCAGCGGGGGAGGTGCTGGTCGTGCCATGGCTATCGCTGT
GTTTTAGTTTGGGCAGGTTGAAGCTTATGTGGGGTGGCAGGGGTGAAAGT
GTAAAAACATGGGCACGATGCAAGCATCGCTGAACAGGGTATACAGCTTC
CGAGATTGCGTCAACGCCAACAACGCCAACAATAGGGCGTTACATAGACA
CTCAACTGGCACAGAAACACAAACAGACAGGTTGTTGTTGGCCTGTGTAG
TTTGCGTACAGAGGGCAGGCACATTTGGGTTCAAAAGCAGGAGAGAGACT
TTGGCATCATCCACGCGTACGTGTCGACATCCCCTCCCTCTCCGCACAAA
ACAACTAATACATGCAAAATCACAGGTGCACAATGGCAGCTTTTTTTACG
CGTGCACGACGACGATCCTCGACAATAGCGGCTTCCATCGTGGCCGGTAG
TTCGTCGATTCTTCTGACTTCGATGCTCACCCACGACGACCAGGATGCTG
CAGGATTTGTAGCCCACGCCCAAGCCCACCAAGCAAACGATCTCCACAAA
TGGTCCCACGTCGGGCTGCCTGCCTTCGACACAACTTACATTTTTCGAGA
AAACTTTGTCATCTGTTACGACTCCCGCACGCGGAATCCGAAATGGGTAA
TGGAACGCCTGACCAAACAAACATGCACGGGGGAGGCGGACCGTCGCGTG
GTGGGGTTCTACGAGGAGGACAGCATCGATCCTCGCTTTCGCAGCAAAAA
TAGCGACTACCTGAATTCAGGGTATGATCGTGGACATATGGCATCAGCAG
CCAACAACAGAAGCTCGACACAGACCATGCAAGAAACGTTTTCCCTCGCG
AATGTGTCGCCGCAGGTCGGCGGGGGATTCAATCGAGATTATTGGGCTAG
GTTTGTGCGGGTTGAGAAGAAAATGAGAAGAATAGAAATAGGGAACAGTG
GATAGCTATATTTTTCCCCCATTTTGAATAGTGACATTCAGCAAAGCAAA
TCATTCACTCCCCCTCGTTGCGTCCTTCCTCCCACCCCCCAGAGTCGAGA
AATTTACGAGGGATCTGACCAAGCATTGCGACGCTGTCTACCTCGTCTCT
GGTCCTCTATTTCTCCCCCAGCGACGCGATACCATCATCACCAGCACCTC
CAATACAGCTTCCAAAGCCAAATTCATCATGACCTATGAATTGCTGGGAG
AGGCCCCCAGCCTCGTGGCGGTCCCCACGCACTTCTTCAAATGTGTGTTT
GCCGAGATGCGGAATGGCCGAAAAGTCGTCGCTGCTTTTGTCTTGCCCAA
TGCACCCATACACGCTGACGTGCCTTTGACAAGGTTTTTGGTTCCGCTGG
CAAATCTGGAGCAGGCGGCAGGCTTCCGAATGTTTGCCCAGGCTCTGACA
GAGGAGGAGCGGGAGGAGGTGGATGCACGAGTCCTCGGTCTGAGAGGAGT
TGGTGCAGGAAATGGAGGCGAGGAGGTAAGGATTGAGGGCATGTTGACGA
ATGGCATATCGGACGATGCGTTGGTAGTACGTCGTGGTGGCCGTGAAGGA
GGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGGATAAAGCTGAATCT
CGATGCGCCTGAGCATCTGTGTGATGTTGTGTTATGCCAATTACCTCCGG
AAAAATTTTGGCAGGTGAATGGAAATAAAAAAAACAGGGAAAAGAGGAAG
AATAGAGATGATTCTGGTGGTGTTAATGCTGAAAAGGGTGAAGAGTGGGC
GTCGCCGGGTTTCCCCTCCATGGTCCCCTCATCGTGGTGGTCGGGAGGAA
GGACAGCGTAAAAAATGGACACTTAAGCTCACGGCCTGAATGAAAAGCTT
TGAAAAAGATCTCTCATTAATGATCAATGCGAGACTCTAAGATGAAGAAT
TGTATGATCAAAAATTATCCAAAATTATTACATCACC back to topCoding sequence (CDS) from alignment at chr9:804531..808167+ >NO09G02710.1 ID=NO09G02710.1|Name=NO09G02710.1|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at chr9:804531..808167+ (Nannochloropsis oceanica) ATGGCAGCTTTTTTTACGCGTGCACGACGACGATCCTCGACAATAGCGGC TTCCATCGTGGCCGGTAGTTCGTCGATTCTTCTGACTTCGATGCTCACCC ACGACGACCAGGATGCTGCAGGATTTGTAGCCCACGCCCAAGCCCACCAA GCAAACGATCTCCACAAATGGTCCCACGTCGGGCTGCCTGCCTTCGACAC AACTTACATTTTTCGAGAAAACTTTGTCATCTGTTACGACTCCCGCACGC GGAATCCGAAATGGGTAATGGAACGCCTGACCAAACAAACATGCACGGGG GAGGCGGACCGTCGCGTGGTGGGGTTCTACGAGGAGGACAGCATCGATCC TCGCTTTCGCAGCAAAAATAGCGACTACCTGAATTCAGGGTATGATCGTG GACATATGGCATCAGCAGCCAACAACAGAAGCTCGACACAGACCATGCAA GAAACGTTTTCCCTCGCGAATGTGTCGCCGCAGGTCGGCGGGGGATTCAA TCGAGATTATTGGGCTAGAGTCGAGAAATTTACGAGGGATCTGACCAAGC ATTGCGACGCTGTCTACCTCGTCTCTGGTCCTCTATTTCTCCCCCAGCGA CGCGATACCATCATCACCAGCACCTCCAATACAGCTTCCAAAGCCAAATT CATCATGACCTATGAATTGCTGGGAGAGGCCCCCAGCCTCGTGGCGGTCC CCACGCACTTCTTCAAATGTGTGTTTGCCGAGATGCGGAATGGCCGAAAA GTCGTCGCTGCTTTTGTCTTGCCCAATGCACCCATACACGCTGACGTGCC TTTGACAAGGTTTTTGGTTCCGCTGGCAAATCTGGAGCAGGCGGCAGGCT TCCGAATGTTTGCCCAGGCTCTGACAGAGGAGGAGCGGGAGGAGGTGGAT GCACGAGTCCTCGGTCTGAGAGGAGTTGGTGCAGGAAATGGAGGCGAGGA GGTAAGGATTGAGGGCATGTTGACGAATGGCATATCGGACGATGCGTTGG TAGTACGTCGTGGTGGCCGTGAAGGAGGAGGAGGAAGAGGAGGAGGAGGA GGAGGAGGAGGGATAAAGCTGAATCTCGATGCGCCTGAGCATCTGTGTGA TGTTGTGTTATGCCAATTACCTCCGGAAAAATTTTGGCAGGTGAATGGAA ATAAAAAAAACAGGGAAAAGAGGAAGAATAGAGATGATTCTGGTGGTGTT AATGCTGAAAAGGGTGAAGAGTGGGCGTCGCCGGGTTTCCCCTCCATGGT CCCCTCATCGTGGTGGTCGGGAGGAAGGACAGCGTAA back to top
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