NO09G02690.1, NO09G02690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02690.1
Unique NameNO09G02690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length888
Alignment locationchr9:797749..798636 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:797749..798636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02690.1 vs.
Match: EWM27568.1 (hypothetical protein Naga_100015g35 [Nannochloropsis gaditana])

HSP 1 Score: 359.8 bits (922), Expect = 8.300e-96
Identity = 204/295 (69.15%), Postives = 225/295 (76.27%), Query Frame = 0 
Query:    1 MHGGCPLRVLLGLPLVLCVLLSPTIFAF--RRPLLSARPAASAFGWSSSKQRAATTFSFGWKNKLSASSFTSSWPAAGGVGAGAVTAPPNQPPPTRAFAMAQLSKITGGATGAADTGSKQHFSLSTLWGVVGVVAVLSNAIRRLLPIALEPFSKAGTAGATAFTPLHWAQYVGFALVMAYAEGYKGFQLKFSPLVVKRAMTLGPNSPFHHKLFAAPYSMGLFHASKKRQIVSWTLALGIVGLVKLVKTLVFPYRAIVDAGVVVGLSWGTASIAGIYIQALRGQVPGIDPAMPEKK 294
            M GGCPLRVLL  PL+LC +LS  I +F  RRPL  ARP+ SAF WSS+K   AT +      KLSA S T  WP        A  A P+     R  +MA+L+KITGGA  A +T  KQ FSLS LWGVVGVVA+LSNAIRRLLPIALEPF K  TA  TAFTPLHWAQYVGFAL+MAYAEGYKGFQLKFSPLVVKRA+TLGP SP  HK+ AAPYSMGLFHASKKRQIVSWT+ALG++GLVK VKTL FPYR+IVDAGVV GLSWG  SIAGIY QALRG VP IDPA+P+ K
Sbjct:    1 MSGGCPLRVLLR-PLLLCAILSRRIVSFSTRRPLFCARPSTSAFDWSSNKHSIATIYP-STSYKLSALSSTP-WPLPE---VEARAALPSTRRAARDVSMAKLAKITGGAAPAVETSQKQSFSLSALWGVVGVVAMLSNAIRRLLPIALEPFKK--TATPTAFTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGPRSPLLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQALRGHVPSIDPALPDVK 287
The following BLAST results are available for this feature:
BLAST of NO09G02690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27568.18.300e-9669.15hypothetical protein Naga_100015g35 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02690NO09G02690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02690.1NO09G02690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02690.1.cds1NO09G02690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02690.1 ID=NO09G02690.1|Name=NO09G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=888bp
ATGCATGGTGGTTGCCCGCTTCGAGTTCTGCTTGGCCTCCCGCTCGTTCT
CTGCGTCCTCCTTTCCCCCACCATTTTCGCCTTCCGTCGCCCATTGCTCA
GCGCCCGCCCCGCTGCCTCTGCCTTTGGCTGGTCCTCGTCTAAGCAACGA
GCCGCCACCACCTTTTCGTTCGGGTGGAAAAACAAGCTTAGCGCATCGTC
CTTCACTTCGTCGTGGCCAGCAGCAGGAGGTGTAGGAGCAGGAGCAGTGA
CGGCTCCACCAAATCAACCACCGCCTACCCGCGCCTTCGCCATGGCGCAG
CTGAGCAAGATCACAGGTGGCGCTACCGGCGCCGCTGACACAGGATCTAA
GCAGCATTTCTCGCTCTCGACGCTTTGGGGCGTCGTTGGCGTGGTGGCTG
TGCTTAGCAACGCCATCCGCCGTCTCTTGCCCATTGCTCTCGAGCCGTTC
AGCAAGGCCGGGACCGCCGGTGCCACTGCCTTTACACCTCTCCACTGGGC
GCAATACGTGGGGTTTGCGTTGGTTATGGCCTACGCTGAGGGTTACAAGG
GCTTTCAACTCAAGTTCTCTCCGCTAGTAGTCAAGCGAGCGATGACCTTG
GGACCTAACTCTCCCTTCCACCACAAGCTGTTCGCGGCCCCCTACAGCAT
GGGTCTCTTCCACGCCAGCAAAAAACGACAAATTGTGTCGTGGACACTCG
CCCTGGGCATTGTGGGATTGGTGAAATTAGTCAAGACGTTGGTGTTTCCG
TACAGGGCTATAGTAGACGCGGGGGTGGTGGTGGGGTTGTCATGGGGTAC
GGCCTCGATTGCGGGTATTTACATCCAGGCGCTGCGGGGACAGGTGCCAG
GGATCGATCCGGCCATGCCAGAGAAGAAGGTGCAATGA
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protein sequence of NO09G02690.1

>NO09G02690.1-protein ID=NO09G02690.1-protein|Name=NO09G02690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MHGGCPLRVLLGLPLVLCVLLSPTIFAFRRPLLSARPAASAFGWSSSKQR
AATTFSFGWKNKLSASSFTSSWPAAGGVGAGAVTAPPNQPPPTRAFAMAQ
LSKITGGATGAADTGSKQHFSLSTLWGVVGVVAVLSNAIRRLLPIALEPF
SKAGTAGATAFTPLHWAQYVGFALVMAYAEGYKGFQLKFSPLVVKRAMTL
GPNSPFHHKLFAAPYSMGLFHASKKRQIVSWTLALGIVGLVKLVKTLVFP
YRAIVDAGVVVGLSWGTASIAGIYIQALRGQVPGIDPAMPEKKVQ*
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mRNA from alignment at chr9:797749..798636-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02690.1 ID=NO09G02690.1|Name=NO09G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=888bp|location=Sequence derived from alignment at chr9:797749..798636- (Nannochloropsis oceanica)
ATGCATGGTGGTTGCCCGCTTCGAGTTCTGCTTGGCCTCCCGCTCGTTCT
CTGCGTCCTCCTTTCCCCCACCATTTTCGCCTTCCGTCGCCCATTGCTCA
GCGCCCGCCCCGCTGCCTCTGCCTTTGGCTGGTCCTCGTCTAAGCAACGA
GCCGCCACCACCTTTTCGTTCGGGTGGAAAAACAAGCTTAGCGCATCGTC
CTTCACTTCGTCGTGGCCAGCAGCAGGAGGTGTAGGAGCAGGAGCAGTGA
CGGCTCCACCAAATCAACCACCGCCTACCCGCGCCTTCGCCATGGCGCAG
CTGAGCAAGATCACAGGTGGCGCTACCGGCGCCGCTGACACAGGATCTAA
GCAGCATTTCTCGCTCTCGACGCTTTGGGGCGTCGTTGGCGTGGTGGCTG
TGCTTAGCAACGCCATCCGCCGTCTCTTGCCCATTGCTCTCGAGCCGTTC
AGCAAGGCCGGGACCGCCGGTGCCACTGCCTTTACACCTCTCCACTGGGC
GCAATACGTGGGGTTTGCGTTGGTTATGGCCTACGCTGAGGGTTACAAGG
GCTTTCAACTCAAGTTCTCTCCGCTAGTAGTCAAGCGAGCGATGACCTTG
GGACCTAACTCTCCCTTCCACCACAAGCTGTTCGCGGCCCCCTACAGCAT
GGGTCTCTTCCACGCCAGCAAAAAACGACAAATTGTGTCGTGGACACTCG
CCCTGGGCATTGTGGGATTGGTGAAATTAGTCAAGACGTTGGTGTTTCCG
TACAGGGCTATAGTAGACGCGGGGGTGGTGGTGGGGTTGTCATGGGGTAC
GGCCTCGATTGCGGGTATTTACATCCAGGCGCTGCGGGGACAGGTGCCAG
GGATCGATCCGGCCATGCCAGAGAAGAAGGTGCAATGA
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Coding sequence (CDS) from alignment at chr9:797749..798636-

>NO09G02690.1 ID=NO09G02690.1|Name=NO09G02690.1|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at chr9:797749..798636- (Nannochloropsis oceanica)
ATGCATGGTGGTTGCCCGCTTCGAGTTCTGCTTGGCCTCCCGCTCGTTCT
CTGCGTCCTCCTTTCCCCCACCATTTTCGCCTTCCGTCGCCCATTGCTCA
GCGCCCGCCCCGCTGCCTCTGCCTTTGGCTGGTCCTCGTCTAAGCAACGA
GCCGCCACCACCTTTTCGTTCGGGTGGAAAAACAAGCTTAGCGCATCGTC
CTTCACTTCGTCGTGGCCAGCAGCAGGAGGTGTAGGAGCAGGAGCAGTGA
CGGCTCCACCAAATCAACCACCGCCTACCCGCGCCTTCGCCATGGCGCAG
CTGAGCAAGATCACAGGTGGCGCTACCGGCGCCGCTGACACAGGATCTAA
GCAGCATTTCTCGCTCTCGACGCTTTGGGGCGTCGTTGGCGTGGTGGCTG
TGCTTAGCAACGCCATCCGCCGTCTCTTGCCCATTGCTCTCGAGCCGTTC
AGCAAGGCCGGGACCGCCGGTGCCACTGCCTTTACACCTCTCCACTGGGC
GCAATACGTGGGGTTTGCGTTGGTTATGGCCTACGCTGAGGGTTACAAGG
GCTTTCAACTCAAGTTCTCTCCGCTAGTAGTCAAGCGAGCGATGACCTTG
GGACCTAACTCTCCCTTCCACCACAAGCTGTTCGCGGCCCCCTACAGCAT
GGGTCTCTTCCACGCCAGCAAAAAACGACAAATTGTGTCGTGGACACTCG
CCCTGGGCATTGTGGGATTGGTGAAATTAGTCAAGACGTTGGTGTTTCCG
TACAGGGCTATAGTAGACGCGGGGGTGGTGGTGGGGTTGTCATGGGGTAC
GGCCTCGATTGCGGGTATTTACATCCAGGCGCTGCGGGGACAGGTGCCAG
GGATCGATCCGGCCATGCCAGAGAAGAAGGTGCAATGA
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Synonyms
Publications