NO09G02670.1, NO09G02670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02670.1
Unique NameNO09G02670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1026
Alignment locationchr9:794733..795758 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:794733..795758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G02670.1 vs.
Match: EWM27588.1 (zinc dhhc domain containing 3 [Nannochloropsis gaditana])

HSP 1 Score: 463.8 bits (1192), Expect = 4.700e-127
Identity = 232/342 (67.84%), Postives = 265/342 (77.49%), Query Frame = 0
Query:    5 PLSSRDPKKKGCGTKHNVRTWCNQDPCGVVCAGVTWWLIAYAQYTINKVVIFEWMGLLSLPGLVNFVAFNTTACLAMLSHVRAMMTDPGAVPREALPLPDEEGLIENGR---ADGAVALEEGKHPLPSDG----AGIG--PRQRVRKFCRRCNAFKPARAHHCSICKRCIIKMDHHCPWVNNCVGIGNHKLFLLFIFYIFLMCTYALILVVARYAKCMGEEEPAVTKGCDDVTGNLLVVFLVIEAILFGLFTCCMMLDQWTVVSTNTTSIDRLKMGTGGVQFQALQQQQQQGRKRGGKGDVNEVFGGREGGRIRGHWFWPVPAQFPGTTKSDVLGYRVEGGE 338
            P SSR  +K+GCGT HNV  WCNQDPCGVVCAGVTW LI YAQYTINK+VIF WMG+LSL G +N  AFN TACLA++SHVRAM TDPGAVPR ALPL D+  +  NG+       VA++EG+     DG    AG+G  PR RVRKFCRRCNAFKP RAHHCSIC+RC++KMDHHCPWVNNCVGIGNHKLFLLFIFY+F+MCTYAL LV+ RYA C+GEE+    +GCDD+ GNLLVVFLV+EA+LFGLFTCCMMLDQWTVVSTNTT+IDRLK      Q+ A+           G+ DVNEVFGG+EG RIR HW WP  A FPG+  SD+LGYRVE GE
Sbjct:    3 PQSSRGAQKEGCGTGHNVLWWCNQDPCGVVCAGVTWSLILYAQYTINKIVIFGWMGVLSLWGFLNVTAFNATACLAIISHVRAMTTDPGAVPRNALPLADDPEVQANGQEGTGTNGVAMDEGRLSGSHDGVLGNAGMGGNPRARVRKFCRRCNAFKPPRAHHCSICRRCVVKMDHHCPWVNNCVGIGNHKLFLLFIFYVFIMCTYALTLVLVRYAGCIGEED---AEGCDDMAGNLLVVFLVMEAVLFGLFTCCMMLDQWTVVSTNTTAIDRLK-----GQYHAVSTSV-------GRADVNEVFGGKEGRRIRWHWLWPSAAHFPGSVLSDLLGYRVEDGE 329          
The following BLAST results are available for this feature:
BLAST of NO09G02670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27588.14.700e-12767.84zinc dhhc domain containing 3 [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02670NO09G02670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02670.1NO09G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02670.1.cds1NO09G02670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02670.1 ID=NO09G02670.1|Name=NO09G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
ATGGGGCCCCTGCCGTTGTCATCGCGGGACCCAAAGAAAAAGGGCTGCGG
AACTAAACACAACGTCCGGACCTGGTGCAACCAAGATCCTTGCGGGGTTG
TCTGCGCCGGGGTCACCTGGTGGCTGATTGCTTATGCGCAGTACACTATC
AACAAGGTCGTGATTTTTGAGTGGATGGGCTTGTTGTCTTTGCCGGGGTT
GGTGAATTTTGTCGCGTTCAATACCACGGCGTGCTTGGCGATGCTCTCGC
ATGTCCGTGCGATGATGACGGATCCTGGGGCGGTCCCTCGCGAGGCTTTA
CCTTTGCCAGACGAGGAAGGTTTGATTGAAAATGGGAGGGCAGATGGTGC
CGTTGCCTTGGAAGAGGGCAAGCACCCGCTGCCCAGTGATGGCGCAGGGA
TAGGCCCTCGCCAGCGTGTGCGTAAGTTTTGTCGGAGGTGCAATGCATTC
AAGCCGGCAAGAGCTCATCATTGCAGTATTTGCAAGAGATGCATTATCAA
GATGGATCACCACTGTCCCTGGGTGAATAATTGCGTGGGCATTGGCAACC
ATAAGTTGTTTTTGTTGTTCATCTTTTACATATTTTTGATGTGTACTTAC
GCATTGATCTTGGTGGTGGCAAGGTATGCCAAGTGCATGGGAGAGGAGGA
GCCGGCTGTGACGAAAGGGTGTGATGACGTCACAGGAAATTTGCTGGTAG
TGTTTTTGGTGATTGAGGCGATTTTATTCGGTCTATTCACTTGCTGTATG
ATGCTTGATCAGTGGACTGTTGTCTCGACCAACACTACTTCTATCGACAG
GCTGAAAATGGGAACGGGAGGGGTGCAGTTTCAAGCGTTGCAGCAACAGC
AGCAGCAAGGGAGGAAGAGAGGAGGGAAAGGGGACGTGAATGAAGTGTTT
GGTGGGAGGGAAGGGGGGAGGATAAGAGGGCATTGGTTCTGGCCGGTGCC
GGCTCAGTTTCCGGGAACAACTAAGAGCGATGTGTTGGGGTATCGTGTGG
AGGGAGGGGAGGAGGACGGGGGGTAG
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protein sequence of NO09G02670.1

>NO09G02670.1-protein ID=NO09G02670.1-protein|Name=NO09G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MGPLPLSSRDPKKKGCGTKHNVRTWCNQDPCGVVCAGVTWWLIAYAQYTI
NKVVIFEWMGLLSLPGLVNFVAFNTTACLAMLSHVRAMMTDPGAVPREAL
PLPDEEGLIENGRADGAVALEEGKHPLPSDGAGIGPRQRVRKFCRRCNAF
KPARAHHCSICKRCIIKMDHHCPWVNNCVGIGNHKLFLLFIFYIFLMCTY
ALILVVARYAKCMGEEEPAVTKGCDDVTGNLLVVFLVIEAILFGLFTCCM
MLDQWTVVSTNTTSIDRLKMGTGGVQFQALQQQQQQGRKRGGKGDVNEVF
GGREGGRIRGHWFWPVPAQFPGTTKSDVLGYRVEGGEEDGG*
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mRNA from alignment at chr9:794733..795758-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02670.1 ID=NO09G02670.1|Name=NO09G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp|location=Sequence derived from alignment at chr9:794733..795758- (Nannochloropsis oceanica)
ATGGGGCCCCTGCCGTTGTCATCGCGGGACCCAAAGAAAAAGGGCTGCGG AACTAAACACAACGTCCGGACCTGGTGCAACCAAGATCCTTGCGGGGTTG TCTGCGCCGGGGTCACCTGGTGGCTGATTGCTTATGCGCAGTACACTATC AACAAGGTCGTGATTTTTGAGTGGATGGGCTTGTTGTCTTTGCCGGGGTT GGTGAATTTTGTCGCGTTCAATACCACGGCGTGCTTGGCGATGCTCTCGC ATGTCCGTGCGATGATGACGGATCCTGGGGCGGTCCCTCGCGAGGCTTTA CCTTTGCCAGACGAGGAAGGTTTGATTGAAAATGGGAGGGCAGATGGTGC CGTTGCCTTGGAAGAGGGCAAGCACCCGCTGCCCAGTGATGGCGCAGGGA TAGGCCCTCGCCAGCGTGTGCGTAAGTTTTGTCGGAGGTGCAATGCATTC AAGCCGGCAAGAGCTCATCATTGCAGTATTTGCAAGAGATGCATTATCAA GATGGATCACCACTGTCCCTGGGTGAATAATTGCGTGGGCATTGGCAACC ATAAGTTGTTTTTGTTGTTCATCTTTTACATATTTTTGATGTGTACTTAC GCATTGATCTTGGTGGTGGCAAGGTATGCCAAGTGCATGGGAGAGGAGGA GCCGGCTGTGACGAAAGGGTGTGATGACGTCACAGGAAATTTGCTGGTAG TGTTTTTGGTGATTGAGGCGATTTTATTCGGTCTATTCACTTGCTGTATG ATGCTTGATCAGTGGACTGTTGTCTCGACCAACACTACTTCTATCGACAG GCTGAAAATGGGAACGGGAGGGGTGCAGTTTCAAGCGTTGCAGCAACAGC AGCAGCAAGGGAGGAAGAGAGGAGGGAAAGGGGACGTGAATGAAGTGTTT GGTGGGAGGGAAGGGGGGAGGATAAGAGGGCATTGGTTCTGGCCGGTGCC GGCTCAGTTTCCGGGAACAACTAAGAGCGATGTGTTGGGGTATCGTGTGG AGGGAGGGGAGGAGGACGGGGGGTAG
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Coding sequence (CDS) from alignment at chr9:794733..795758-

>NO09G02670.1 ID=NO09G02670.1|Name=NO09G02670.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr9:794733..795758- (Nannochloropsis oceanica)
ATGGGGCCCCTGCCGTTGTCATCGCGGGACCCAAAGAAAAAGGGCTGCGG
AACTAAACACAACGTCCGGACCTGGTGCAACCAAGATCCTTGCGGGGTTG
TCTGCGCCGGGGTCACCTGGTGGCTGATTGCTTATGCGCAGTACACTATC
AACAAGGTCGTGATTTTTGAGTGGATGGGCTTGTTGTCTTTGCCGGGGTT
GGTGAATTTTGTCGCGTTCAATACCACGGCGTGCTTGGCGATGCTCTCGC
ATGTCCGTGCGATGATGACGGATCCTGGGGCGGTCCCTCGCGAGGCTTTA
CCTTTGCCAGACGAGGAAGGTTTGATTGAAAATGGGAGGGCAGATGGTGC
CGTTGCCTTGGAAGAGGGCAAGCACCCGCTGCCCAGTGATGGCGCAGGGA
TAGGCCCTCGCCAGCGTGTGCGTAAGTTTTGTCGGAGGTGCAATGCATTC
AAGCCGGCAAGAGCTCATCATTGCAGTATTTGCAAGAGATGCATTATCAA
GATGGATCACCACTGTCCCTGGGTGAATAATTGCGTGGGCATTGGCAACC
ATAAGTTGTTTTTGTTGTTCATCTTTTACATATTTTTGATGTGTACTTAC
GCATTGATCTTGGTGGTGGCAAGGTATGCCAAGTGCATGGGAGAGGAGGA
GCCGGCTGTGACGAAAGGGTGTGATGACGTCACAGGAAATTTGCTGGTAG
TGTTTTTGGTGATTGAGGCGATTTTATTCGGTCTATTCACTTGCTGTATG
ATGCTTGATCAGTGGACTGTTGTCTCGACCAACACTACTTCTATCGACAG
GCTGAAAATGGGAACGGGAGGGGTGCAGTTTCAAGCGTTGCAGCAACAGC
AGCAGCAAGGGAGGAAGAGAGGAGGGAAAGGGGACGTGAATGAAGTGTTT
GGTGGGAGGGAAGGGGGGAGGATAAGAGGGCATTGGTTCTGGCCGGTGCC
GGCTCAGTTTCCGGGAACAACTAAGAGCGATGTGTTGGGGTATCGTGTGG
AGGGAGGGGAGGAGGACGGGGGGTAG
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Synonyms
Publications