|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr9 | genome | chr9:792028..794727 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G02650.1 vs.
Match: EWM27533.1 (hypothetical protein Naga_100015g32 [Nannochloropsis gaditana]) HSP 1 Score: 521.2 bits (1341), Expect = 4.300e-144 Identity = 278/439 (63.33%), Postives = 323/439 (73.58%), Query Frame = 0
Query: 157 IQRPPCSLQPFTPAATRAPLQSQSRHNQRPSPPKRQRIIAWARRLRWQRKQR----KFDSCTFDDFDRTTLPEPEAARKKLLASLLVGAGASGTLLLSILLRTMPLGKRAIFSAAPLAGTLLPYFLCLARGLPLASVGRWHNVSAIGHRLGGVGALVLPLVLVVQEAMTSSHVSVLLYTSTILAIFSNLLFGVALIPTRFPGYDIPAARGLAVGTLYGLSFLGWSLTFRFGAYGWYGPIGKLFAIIAVYAVVFSWSDAGQNMYFWWKGKYKTELGRKWFLPFEPSLFRQVFGSNLWRQPRADALQASLMTAWQGSLPTIFVALLGSASLLQLPYLLWGPASMQQLVNSYPGLARWATYQALLAVAANNFATFLVTLVVHNRLPLGHVAFYNVCVPLIPLLNIAAFCWRYPGVSLSLIVRLLVRAPGREIVAGVPPALLS 592
++ P C P P R LQ H+ P W L+ K + K D++ + EP+ ARKK +ASL+VG GAS TLL SI RTMPLGKRA S APLA TLLPYFLC+ARGLPL +VG W +++AIGHRLGG+GAL+LPLVLVV+EA+T++H LLY T+ I NLLFGVALIP+RFP YDIPAARGLAVGTLYGL+FLGWS TFRFG WY PIG+L A++A YAV FSWSDAGQN+ W +G YKT+LGRKW+LPFE S QVFGSNLWRQP ADAL ASLMTAWQG PT+FVALLGS++LLQLPYLLWG A + L + P L RWATYQAL AVAANNFATFLVTLVVH+RLPL HVAFYNV VPLIP LNIAAFCWRYPG+++ LI++LL+R PG V +P A LS
Sbjct: 67 VRYPRCRTAPSPPTCLRQALQF---HDPLKPP--------WLALLKADHKLKQATVKAAGNMAQDYELSPSLEPKIARKKFVASLVVGIGASMTLLASICFRTMPLGKRAFLSIAPLAATLLPYFLCVARGLPLVNVGSWRSLNAIGHRLGGIGALLLPLVLVVREALTNTHAPGLLYGVTVATILMNLLFGVALIPSRFPAYDIPAARGLAVGTLYGLAFLGWSTTFRFGGQAWYAPIGRLSALVAAYAVAFSWSDAGQNIRCWRRGMYKTKLGRKWYLPFERSSLTQVFGSNLWRQPSADALDASLMTAWQGCAPTVFVALLGSSALLQLPYLLWGSAYTRSLTMACPALTRWATYQALAAVAANNFATFLVTLVVHSRLPLHHVAFYNVLVPLIPTLNIAAFCWRYPGMNIPLILQLLLRPPGAGCVQAMPAAWLS 494
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G02650.1 ID=NO09G02650.1|Name=NO09G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2700bp
CTTCAACTGCCGGGGCAGTTTTGCCCCAAATTTTTGATTTGAGCTTTGAT
GCCCTTCCCTTGTCCTTCTTTTCCAAGTGCAGGTTGTCGACCACACACAT
GCGCGCCTATTCAACGAATCATCAGGGATAGCGGGATGGGAATGACCGCG
TCGACCGCTCGTATTTTCAACCCGAGTCCAAGCCTCTCTCGAACCATGGT
GCAATTGCCGAGCTCAGCAAGACCCACCCTCCCTCCTCCCCCCCCCACAG
CCACCATGTCTCTACCTGTGCGAAAACGACATGCATGGCCCCTACTTCGA
CAATCATGGATATCTTGGCCTCTCTTGCCGCCGCTAATCGCGCTGTTGTT
CCCAACAACTGCAGAGGCGCGGAGGGCATCAATTACGGCGTTTTATTCTG
TGCCCGTCGCTTTGCCATCACGCCGCTTTGCCTCTCAGCAGTCAATATTA
CGCAAGTCACACAGCCTTCTGCCCATCTCCTTGTCGCCCTCTCGCGTTCT
ATCGGCGCCTGTACAAATACAAAGGCCACCGTGCTCTCTCCAACCTTTCA
CACCAGCAGCAACACGAGCCCCACTCCAGTCTCAATCCCGTCATAACCAG
CGACCATCACCCCCCAAACGTCAACGGATAATAGCGTGGGCGAGACGTCT
TCGATGGCAAAGAAAACAACGGAAATTTGACTCCTGTACATTCGATGATT
TTGATCGGACCACATTACCGGAGCCGGAGGCCGCACGCAAGAAGCTGTTA
GCCAGCCTGCTCGTCGGGGCAGGCGCATCTGGTACGCTTCTACTGTCTAT
TTTGCTTCGAACCATGCCTTTGGGTAAGCGAGCCATCTTCTCTGCGGCGC
CATTGGCAGGGACTCTGTTGCCGTATTTCTTGTGTTTGGCGCGGGGGCTG
CCATTGGCGAGCGTGGGTAGGTGGCATAACGTGAGTGCAATCGGCCATCG
GCTCGGTGGGGTCGGGGCTTTGGTGCTACCTCTTGTCCTGGTGGTGCAGG
AGGCAATGACAAGCAGTCATGTTTCTGTCCTTTTGTATACGTCGACTATC
CTCGCCATTTTTAGCAACCTTCTGTTTGGTGTTGCCTTGATCCCGACTCG
TTTCCCCGGGTATGATATACCTGCTGCTCGAGGCCTGGCTGTGGGGACTC
TGTATGGACTGTCTTTCTTGGGATGGAGCTTGACGTTTCGATTCGGGGCA
TATGGGTGGTACGGGCCGATAGGGAAGTTGTTTGCTATAATTGCTGTGTA
TGCAGTAGTATTTTCATGGAGTGACGCTGGGCAGAACATGTATTTTTGGT
GGAAAGGGAAATACAAGACGGAATTGGGGAGGAAGTGGTTTTTGCCATTT
GAACCCTCCTTGTTCCGGCAGGTGTTTGGGAGTAATTTGTGGCGGCAACC
GAGGGCGGATGCATTGCAAGCTTCTTTGATGACCGCGTGGCAAGGGAGTT
TACCCACGATTTTTGTCGCCCTTCTGGGATCTGCATCCCTGCTCCAACTA
CCGTACCTCTTGTGGGGGCCTGCCTCAATGCAACAGCTGGTGAATTCTTA
CCCTGGCCTAGCCAGATGGGCGACGTACCAAGCCCTTCTTGCGGTGGCTG
CTAACAATTTCGCTACCTTTCTAGTGACCCTCGTGGTGCACAATCGACTG
CCGCTGGGTCATGTAGCTTTTTACAACGTGTGTGTGCCCTTGATCCCGCT
TTTGAATATCGCCGCGTTTTGCTGGCGATATCCGGGGGTGAGCTTGTCGT
TGATTGTGAGGCTGTTGGTGAGGGCACCGGGGAGGGAGATAGTCGCGGGT
GTACCGCCCGCGTTGTTGTCGTGAGGAAGGCAGGGAGGCTGGGAGGCAGG
TATAGGAGCTCGGTATTTGTACTTGCATTTTTGATATCGATAAAATTGTA
AACTGTTTTTTTGCAGACGAGGACGTGGAGTGGATTATATGTGTTTGTAG
GTATTGGAGGATAAAATTATTACCAAACAGCTTTGAAGCGACTCGTGCAC
GGGGGAAAATATCGAAATGAATACAAATGAGAGGAGAAATAATGACACAC
ACATAATCATGAACCAGAAACGCTCAACGATACAATATAAGTAGTGACGT
GGTCTTGTTTGCTGCAGAGTTTTCCTTCTTGGTGTTTCCATCCCGCCCCA
TCCTCTTCTCACACATACACACACACACACACACACACACACACACACAC
ACGCACGCCCGTACTTTCTTGTCTTTATAATTCACGGCGGAAAGTGACTC
ACTGTACATACACTATTTGGTCCATTCCTTTGATACCCACCCCTGCTCCC
TCTCTTTCACCCTTTGCCATCATACAGACCCTCTCCCCGTAGCAAAGCCA
TGCGATCGCCTACTCCCACCGAGACAGATGACGACAGCTCTCCTCCTCCA
CCACAACCACCTCCTCCTCCTCCTCCTCCTCCTCCCCCCCCACTCCCCCT
CCTCCCCCACTCCCTTGCTCGCCTGTGTCGGTGTCCGTTTACTCGGTACC
GGCGCCAAACCCCCGATGCCACTACTCCTCCCTCCCTCCCTCCGTCCCAT
GCCATCCGACAGAAGCTGCTCTTCCTTCACCATCACCTCCATCCCTATTC
CTCCCGACGACGATCGCCTTCTTTTATCCAACAGCATTATACCCGTCTCT
TCGTCCGCCTCCAGACACTCCTCCTCTATCTCTCTCCTCCCTCTTCCACC back to topprotein sequence of NO09G02650.1 >NO09G02650.1-protein ID=NO09G02650.1-protein|Name=NO09G02650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MPFPCPSFPSAGCRPHTCAPIQRIIRDSGMGMTASTARIFNPSPSLSRTM
VQLPSSARPTLPPPPPTATMSLPVRKRHAWPLLRQSWISWPLLPPLIALL
FPTTAEARRASITAFYSVPVALPSRRFASQQSILRKSHSLLPISLSPSRV
LSAPVQIQRPPCSLQPFTPAATRAPLQSQSRHNQRPSPPKRQRIIAWARR
LRWQRKQRKFDSCTFDDFDRTTLPEPEAARKKLLASLLVGAGASGTLLLS
ILLRTMPLGKRAIFSAAPLAGTLLPYFLCLARGLPLASVGRWHNVSAIGH
RLGGVGALVLPLVLVVQEAMTSSHVSVLLYTSTILAIFSNLLFGVALIPT
RFPGYDIPAARGLAVGTLYGLSFLGWSLTFRFGAYGWYGPIGKLFAIIAV
YAVVFSWSDAGQNMYFWWKGKYKTELGRKWFLPFEPSLFRQVFGSNLWRQ
PRADALQASLMTAWQGSLPTIFVALLGSASLLQLPYLLWGPASMQQLVNS
YPGLARWATYQALLAVAANNFATFLVTLVVHNRLPLGHVAFYNVCVPLIP
LLNIAAFCWRYPGVSLSLIVRLLVRAPGREIVAGVPPALLS* back to topmRNA from alignment at chr9:792028..794727+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G02650.1 ID=NO09G02650.1|Name=NO09G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2700bp|location=Sequence derived from alignment at chr9:792028..794727+ (Nannochloropsis oceanica)
CTTCAACTGCCGGGGCAGTTTTGCCCCAAATTTTTGATTTGAGCTTTGAT
GCCCTTCCCTTGTCCTTCTTTTCCAAGTGCAGGTTGTCGACCACACACAT
GCGCGCCTATTCAACGAATCATCAGGGATAGCGGGATGGGAATGACCGCG
TCGACCGCTCGTATTTTCAACCCGAGTCCAAGCCTCTCTCGAACCATGGT
GCAATTGCCGAGCTCAGCAAGACCCACCCTCCCTCCTCCCCCCCCCACAG
CCACCATGTCTCTACCTGTGCGAAAACGACATGCATGGCCCCTACTTCGA
CAATCATGGATATCTTGGCCTCTCTTGCCGCCGCTAATCGCGCTGTTGTT
CCCAACAACTGCAGAGGCGCGGAGGGCATCAATTACGGCGTTTTATTCTG
TGCCCGTCGCTTTGCCATCACGCCGCTTTGCCTCTCAGCAGTCAATATTA
CGCAAGTCACACAGCCTTCTGCCCATCTCCTTGTCGCCCTCTCGCGTTCT
ATCGGCGCCTGTACAAATACAAAGGCCACCGTGCTCTCTCCAACCTTTCA
CACCAGCAGCAACACGAGCCCCACTCCAGTCTCAATCCCGTCATAACCAG
CGACCATCACCCCCCAAACGTCAACGGATAATAGCGTGGGCGAGACGTCT
TCGATGGCAAAGAAAACAACGGAAATTTGACTCCTGTACATTCGATGATT
TTGATCGGACCACATTACCGGAGCCGGAGGCCGCACGCAAGAAGCTGTTA
GCCAGCCTGCTCGTCGGGGCAGGCGCATCTGGTACGCTTCTACTGTCTAT
TTTGCTTCGAACCATGCCTTTGGGTAAGCGAGCCATCTTCTCTGCGGCGC
CATTGGCAGGGACTCTGTTGCCGTATTTCTTGTGTTTGGCGCGGGGGCTG
CCATTGGCGAGCGTGGGTAGGTGGCATAACGTGAGTGCAATCGGCCATCG
GCTCGGTGGGGTCGGGGCTTTGGTGCTACCTCTTGTCCTGGTGGTGCAGG
AGGCAATGACAAGCAGTCATGTTTCTGTCCTTTTGTATACGTCGACTATC
CTCGCCATTTTTAGCAACCTTCTGTTTGGTGTTGCCTTGATCCCGACTCG
TTTCCCCGGGTATGATATACCTGCTGCTCGAGGCCTGGCTGTGGGGACTC
TGTATGGACTGTCTTTCTTGGGATGGAGCTTGACGTTTCGATTCGGGGCA
TATGGGTGGTACGGGCCGATAGGGAAGTTGTTTGCTATAATTGCTGTGTA
TGCAGTAGTATTTTCATGGAGTGACGCTGGGCAGAACATGTATTTTTGGT
GGAAAGGGAAATACAAGACGGAATTGGGGAGGAAGTGGTTTTTGCCATTT
GAACCCTCCTTGTTCCGGCAGGTGTTTGGGAGTAATTTGTGGCGGCAACC
GAGGGCGGATGCATTGCAAGCTTCTTTGATGACCGCGTGGCAAGGGAGTT
TACCCACGATTTTTGTCGCCCTTCTGGGATCTGCATCCCTGCTCCAACTA
CCGTACCTCTTGTGGGGGCCTGCCTCAATGCAACAGCTGGTGAATTCTTA
CCCTGGCCTAGCCAGATGGGCGACGTACCAAGCCCTTCTTGCGGTGGCTG
CTAACAATTTCGCTACCTTTCTAGTGACCCTCGTGGTGCACAATCGACTG
CCGCTGGGTCATGTAGCTTTTTACAACGTGTGTGTGCCCTTGATCCCGCT
TTTGAATATCGCCGCGTTTTGCTGGCGATATCCGGGGGTGAGCTTGTCGT
TGATTGTGAGGCTGTTGGTGAGGGCACCGGGGAGGGAGATAGTCGCGGGT
GTACCGCCCGCGTTGTTGTCGTGAGGAAGGCAGGGAGGCTGGGAGGCAGG
TATAGGAGCTCGGTATTTGTACTTGCATTTTTGATATCGATAAAATTGTA
AACTGTTTTTTTGCAGACGAGGACGTGGAGTGGATTATATGTGTTTGTAG
GTATTGGAGGATAAAATTATTACCAAACAGCTTTGAAGCGACTCGTGCAC
GGGGGAAAATATCGAAATGAATACAAATGAGAGGAGAAATAATGACACAC
ACATAATCATGAACCAGAAACGCTCAACGATACAATATAAGTAGTGACGT
GGTCTTGTTTGCTGCAGAGTTTTCCTTCTTGGTGTTTCCATCCCGCCCCA
TCCTCTTCTCACACATACACACACACACACACACACACACACACACACAC
ACGCACGCCCGTACTTTCTTGTCTTTATAATTCACGGCGGAAAGTGACTC
ACTGTACATACACTATTTGGTCCATTCCTTTGATACCCACCCCTGCTCCC
TCTCTTTCACCCTTTGCCATCATACAGACCCTCTCCCCGTAGCAAAGCCA
TGCGATCGCCTACTCCCACCGAGACAGATGACGACAGCTCTCCTCCTCCA
CCACAACCACCTCCTCCTCCTCCTCCTCCTCCTCCCCCCCCACTCCCCCT
CCTCCCCCACTCCCTTGCTCGCCTGTGTCGGTGTCCGTTTACTCGGTACC
GGCGCCAAACCCCCGATGCCACTACTCCTCCCTCCCTCCCTCCGTCCCAT
GCCATCCGACAGAAGCTGCTCTTCCTTCACCATCACCTCCATCCCTATTC
CTCCCGACGACGATCGCCTTCTTTTATCCAACAGCATTATACCCGTCTCT
TCGTCCGCCTCCAGACACTCCTCCTCTATCTCTCTCCTCCCTCTTCCACC
back to topCoding sequence (CDS) from alignment at chr9:792028..794727+ >NO09G02650.1 ID=NO09G02650.1|Name=NO09G02650.1|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at chr9:792028..794727+ (Nannochloropsis oceanica)
ATGCCCTTCCCTTGTCCTTCTTTTCCAAGTGCAGGTTGTCGACCACACAC
ATGCGCGCCTATTCAACGAATCATCAGGGATAGCGGGATGGGAATGACCG
CGTCGACCGCTCGTATTTTCAACCCGAGTCCAAGCCTCTCTCGAACCATG
GTGCAATTGCCGAGCTCAGCAAGACCCACCCTCCCTCCTCCCCCCCCCAC
AGCCACCATGTCTCTACCTGTGCGAAAACGACATGCATGGCCCCTACTTC
GACAATCATGGATATCTTGGCCTCTCTTGCCGCCGCTAATCGCGCTGTTG
TTCCCAACAACTGCAGAGGCGCGGAGGGCATCAATTACGGCGTTTTATTC
TGTGCCCGTCGCTTTGCCATCACGCCGCTTTGCCTCTCAGCAGTCAATAT
TACGCAAGTCACACAGCCTTCTGCCCATCTCCTTGTCGCCCTCTCGCGTT
CTATCGGCGCCTGTACAAATACAAAGGCCACCGTGCTCTCTCCAACCTTT
CACACCAGCAGCAACACGAGCCCCACTCCAGTCTCAATCCCGTCATAACC
AGCGACCATCACCCCCCAAACGTCAACGGATAATAGCGTGGGCGAGACGT
CTTCGATGGCAAAGAAAACAACGGAAATTTGACTCCTGTACATTCGATGA
TTTTGATCGGACCACATTACCGGAGCCGGAGGCCGCACGCAAGAAGCTGT
TAGCCAGCCTGCTCGTCGGGGCAGGCGCATCTGGTACGCTTCTACTGTCT
ATTTTGCTTCGAACCATGCCTTTGGGTAAGCGAGCCATCTTCTCTGCGGC
GCCATTGGCAGGGACTCTGTTGCCGTATTTCTTGTGTTTGGCGCGGGGGC
TGCCATTGGCGAGCGTGGGTAGGTGGCATAACGTGAGTGCAATCGGCCAT
CGGCTCGGTGGGGTCGGGGCTTTGGTGCTACCTCTTGTCCTGGTGGTGCA
GGAGGCAATGACAAGCAGTCATGTTTCTGTCCTTTTGTATACGTCGACTA
TCCTCGCCATTTTTAGCAACCTTCTGTTTGGTGTTGCCTTGATCCCGACT
CGTTTCCCCGGGTATGATATACCTGCTGCTCGAGGCCTGGCTGTGGGGAC
TCTGTATGGACTGTCTTTCTTGGGATGGAGCTTGACGTTTCGATTCGGGG
CATATGGGTGGTACGGGCCGATAGGGAAGTTGTTTGCTATAATTGCTGTG
TATGCAGTAGTATTTTCATGGAGTGACGCTGGGCAGAACATGTATTTTTG
GTGGAAAGGGAAATACAAGACGGAATTGGGGAGGAAGTGGTTTTTGCCAT
TTGAACCCTCCTTGTTCCGGCAGGTGTTTGGGAGTAATTTGTGGCGGCAA
CCGAGGGCGGATGCATTGCAAGCTTCTTTGATGACCGCGTGGCAAGGGAG
TTTACCCACGATTTTTGTCGCCCTTCTGGGATCTGCATCCCTGCTCCAAC
TACCGTACCTCTTGTGGGGGCCTGCCTCAATGCAACAGCTGGTGAATTCT
TACCCTGGCCTAGCCAGATGGGCGACGTACCAAGCCCTTCTTGCGGTGGC
TGCTAACAATTTCGCTACCTTTCTAGTGACCCTCGTGGTGCACAATCGAC
TGCCGCTGGGTCATGTAGCTTTTTACAACGTGTGTGTGCCCTTGATCCCG
CTTTTGAATATCGCCGCGTTTTGCTGGCGATATCCGGGGGTGAGCTTGTC
GTTGATTGTGAGGCTGTTGGTGAGGGCACCGGGGAGGGAGATAGTCGCGG
GTGTACCGCCCGCGTTGTTGTCGTGA back to top
|