NO09G02630.1, NO09G02630.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G02630.1
Unique Name	NO09G02630.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1743
Alignment location	chr9:784354..786096 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:784354..786096 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO09G02630.1 vs.
Match: EWM27597.1 (Glutathione S-transferase [Nannochloropsis gaditana])

HSP 1 Score: 776.2 bits (2003), Expect = 7.300e-221
Identity = 376/571 (65.85%), Postives = 450/571 (78.81%), Query Frame = 0

Query:   13 VPLVALLALVLHITQTSHAFLKQPP---LSSHHRPRRRHQQHAPASASPTSLALFKGVRDIFSRRQKRGENPEIPPDEENMTKYERFRQVIPLPPVGERRRYSLGVGSSRLPSIEDLWAEAWPTIACGDAMERRDALNEGSGPPDAEALVRRFGQESATIQTVFYKDAASWCPYCASVWMMLEEKQLPYTMKRINLLSYGEKPEWLYDVSGTGLMPVLEVGGRILRESVDICKFIDWWRGNDISPAGKNTKSLWPTKGNTLHTEAEALLGLERDLFRDWFIYVFEGPEERGREEFWATLLQVETALAKTSDNPWFLPGTDPSLVDIVFAPKVERMVASCLYWKGMTLRGHAELPALGKWLDALDRRPSYAAIKADFFSLVNGLEPLFGRAYGVETSEVKEIQRKIDGLHYTSWRLPVSAEENIREYLPPDTQPSESYARQRAAVRLILNNKRLPRYMARALGTPGPEHRSPLADPQNAVDEWVLPEVDAAYRYLVLALLRGKEVVAPLVAADKAAADTIYGGPIEEARAARGRIVACLNYLKFRVGVPRDMTLAEARQVRGTLTWLVEALK 581
            V  V LLAL+L         L+ PP     + +  R        A+ S TS+ALFK +RD   RR++      +P D+E++TKY+RFRQV+P+PP  ERRRY+LG  SS LPS+E LWAEAWPT AC DAMER+ AL++G GPP A AL R+FG    T++ +FYKDAASWCPYCASVWM LEEK +PYT+KRINLLSYGEKPEW+YD+SGTGL+P+LEV GR++RESV+ICK ID W+G D     K  + LWP +G+ LH EAEALLGLERDLFRDWF+Y+FE PE  G +EFW  L QVE+ALAK +++PWFLPGT+PSLVDI+FAPKVER++ASCLYWKG+TLR H +LPAL +WLDALD RPSYAA KADFF+L+N LEPLFGRAY V T EV E+Q+K+DG H T+WRLPVS EE +REYLP  TQP+E YARQ AAVRLI+N+KRLPRYM RALG PGPE RSPLADP N +DEW LPEV+ AYRYL+LALLRG++ V PL+AADK+AA++ YG   EE   AR R+VACL YLK+R+GVPRDMTLAEARQVRGTLTWLVEALK
Sbjct:    2 VKRVLLLALILSAHLAPAFSLRPPPPLMFPASYGSRT-------AALSQTSMALFKDLRDFVFRRRRPKNVSVLPKDQESLTKYQRFRQVMPVPPPNERRRYALGGASSSLPSMEALWAEAWPTAACKDAMERQKALSDGDGPPQAGALTRKFGHNE-TLRAIFYKDAASWCPYCASVWMTLEEKCMPYTLKRINLLSYGEKPEWIYDISGTGLLPLLEVNGRMIRESVEICKSIDKWQGFDEGVMVK-PRRLWPDEGDALHAEAEALLGLERDLFRDWFVYLFEKPESHGHDEFWTVLRQVESALAKYAESPWFLPGTEPSLVDIIFAPKVERVIASCLYWKGLTLRQHPDLPALSRWLDALDHRPSYAAFKADFFTLINSLEPLFGRAYSVNTPEVAELQQKLDGFHPTAWRLPVSEEEKVREYLPEATQPTELYARQSAAVRLIINHKRLPRYMLRALGVPGPEFRSPLADPFNQIDEWALPEVETAYRYLILALLRGRDYVDPLLAADKSAAESAYGSSEEERALARARMVACLEYLKYRIGVPRDMTLAEARQVRGTLTWLVEALK 563

The following BLAST results are available for this feature:

BLAST of NO09G02630.1 vs.

BLAST of NO09G02630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27597.1	7.300e-221	65.85	Glutathione S-transferase [Nannochloropsis gaditan...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G02630	NO09G02630	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO09G02630.1	NO09G02630.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO09G02630.1.cds1	NO09G02630.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:784354..786096-
coding sequence from alignment at chr9:784354..786096-

mRNA sequence

>NO09G02630.1 ID=NO09G02630.1|Name=NO09G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp
ATGACGGAAAGCTTGCAGAAACGGCGCGCAGTGCGCGTTCCACTGGTGGC
ATTGCTAGCTCTGGTCCTGCACATCACGCAAACAAGCCACGCATTCCTCA
AGCAACCTCCTCTCTCTAGTCACCATCGTCCGCGTCGTCGTCACCAGCAG
CATGCGCCCGCCTCTGCCTCCCCGACGTCCTTGGCGCTCTTCAAGGGTGT
GCGTGACATCTTTTCTCGGCGGCAAAAAAGGGGTGAGAATCCGGAAATCC
CACCAGATGAGGAGAACATGACCAAGTACGAACGCTTTCGTCAAGTCATT
CCTCTCCCACCTGTGGGCGAGCGCCGTCGCTACTCGCTTGGCGTAGGTTC
CTCACGCTTGCCCAGCATCGAAGATTTGTGGGCCGAGGCTTGGCCAACGA
TTGCCTGTGGCGACGCCATGGAACGACGGGATGCGCTGAACGAAGGAAGT
GGGCCTCCAGATGCGGAGGCATTGGTACGGAGGTTCGGCCAGGAGAGTGC
AACGATTCAAACGGTGTTCTACAAGGACGCCGCTTCCTGGTGTCCGTACT
GCGCCTCAGTATGGATGATGCTGGAAGAGAAGCAGCTACCTTACACCATG
AAACGCATTAATCTGTTGTCGTACGGTGAGAAGCCCGAGTGGTTATACGA
CGTCTCCGGGACGGGTTTAATGCCCGTTCTTGAAGTAGGGGGGCGCATTC
TTCGAGAATCGGTCGACATTTGCAAATTTATTGATTGGTGGCGCGGAAAT
GACATAAGCCCCGCTGGGAAAAATACCAAAAGTTTGTGGCCTACCAAGGG
CAATACCTTACACACGGAGGCCGAGGCGTTGCTAGGGTTGGAGCGTGACC
TTTTTCGAGATTGGTTCATTTACGTATTCGAAGGACCGGAGGAAAGGGGA
AGAGAGGAGTTTTGGGCCACACTTTTACAAGTGGAGACTGCATTGGCCAA
AACTAGTGATAATCCTTGGTTCCTACCGGGGACGGACCCATCCTTAGTTG
ATATTGTCTTCGCACCGAAAGTTGAGAGGATGGTGGCATCGTGTCTGTAT
TGGAAAGGGATGACTCTGCGGGGGCATGCCGAGCTCCCAGCGCTAGGCAA
GTGGTTGGACGCGCTGGATCGACGACCCAGTTATGCTGCGATCAAGGCCG
ATTTCTTCTCTCTCGTTAATGGCTTGGAGCCCTTGTTTGGTCGGGCGTAC
GGTGTGGAGACGTCGGAAGTGAAGGAAATTCAACGCAAAATCGATGGCCT
CCATTATACCTCTTGGCGTCTCCCTGTGTCGGCCGAGGAAAATATTCGAG
AGTATCTTCCGCCCGACACACAGCCTTCCGAGAGCTACGCGCGGCAAAGA
GCGGCAGTTCGCCTGATTTTGAACAATAAACGATTGCCTCGGTATATGGC
GCGTGCTTTAGGGACACCAGGGCCCGAACATCGTAGCCCGCTGGCGGATC
CTCAAAATGCCGTTGATGAGTGGGTGTTACCAGAAGTGGATGCTGCGTAT
CGATATCTCGTTTTGGCATTGCTCCGAGGAAAGGAGGTAGTGGCGCCGTT
GGTGGCTGCTGATAAGGCAGCGGCGGATACGATTTATGGAGGGCCGATAG
AGGAGGCGAGGGCGGCGAGGGGGAGGATTGTGGCGTGCTTGAATTATTTG
AAGTTTCGGGTGGGGGTGCCCAGAGACATGACGTTGGCGGAGGCGAGGCA
GGTGAGGGGGACGTTGACGTGGTTGGTCGAGGCTTTGAAATGA

protein sequence of NO09G02630.1

>NO09G02630.1-protein ID=NO09G02630.1-protein|Name=NO09G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MTESLQKRRAVRVPLVALLALVLHITQTSHAFLKQPPLSSHHRPRRRHQQ
HAPASASPTSLALFKGVRDIFSRRQKRGENPEIPPDEENMTKYERFRQVI
PLPPVGERRRYSLGVGSSRLPSIEDLWAEAWPTIACGDAMERRDALNEGS
GPPDAEALVRRFGQESATIQTVFYKDAASWCPYCASVWMMLEEKQLPYTM
KRINLLSYGEKPEWLYDVSGTGLMPVLEVGGRILRESVDICKFIDWWRGN
DISPAGKNTKSLWPTKGNTLHTEAEALLGLERDLFRDWFIYVFEGPEERG
REEFWATLLQVETALAKTSDNPWFLPGTDPSLVDIVFAPKVERMVASCLY
WKGMTLRGHAELPALGKWLDALDRRPSYAAIKADFFSLVNGLEPLFGRAY
GVETSEVKEIQRKIDGLHYTSWRLPVSAEENIREYLPPDTQPSESYARQR
AAVRLILNNKRLPRYMARALGTPGPEHRSPLADPQNAVDEWVLPEVDAAY
RYLVLALLRGKEVVAPLVAADKAAADTIYGGPIEEARAARGRIVACLNYL
KFRVGVPRDMTLAEARQVRGTLTWLVEALK*

mRNA from alignment at chr9:784354..786096-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO09G02630.1 ID=NO09G02630.1|Name=NO09G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp|location=Sequence derived from alignment at chr9:784354..786096- (Nannochloropsis oceanica)
ATGACGGAAAGCTTGCAGAAACGGCGCGCAGTGCGCGTTCCACTGGTGGC
ATTGCTAGCTCTGGTCCTGCACATCACGCAAACAAGCCACGCATTCCTCA
AGCAACCTCCTCTCTCTAGTCACCATCGTCCGCGTCGTCGTCACCAGCAG
CATGCGCCCGCCTCTGCCTCCCCGACGTCCTTGGCGCTCTTCAAGGGTGT
GCGTGACATCTTTTCTCGGCGGCAAAAAAGGGGTGAGAATCCGGAAATCC
CACCAGATGAGGAGAACATGACCAAGTACGAACGCTTTCGTCAAGTCATT
CCTCTCCCACCTGTGGGCGAGCGCCGTCGCTACTCGCTTGGCGTAGGTTC
CTCACGCTTGCCCAGCATCGAAGATTTGTGGGCCGAGGCTTGGCCAACGA
TTGCCTGTGGCGACGCCATGGAACGACGGGATGCGCTGAACGAAGGAAGT
GGGCCTCCAGATGCGGAGGCATTGGTACGGAGGTTCGGCCAGGAGAGTGC
AACGATTCAAACGGTGTTCTACAAGGACGCCGCTTCCTGGTGTCCGTACT
GCGCCTCAGTATGGATGATGCTGGAAGAGAAGCAGCTACCTTACACCATG
AAACGCATTAATCTGTTGTCGTACGGTGAGAAGCCCGAGTGGTTATACGA
CGTCTCCGGGACGGGTTTAATGCCCGTTCTTGAAGTAGGGGGGCGCATTC
TTCGAGAATCGGTCGACATTTGCAAATTTATTGATTGGTGGCGCGGAAAT
GACATAAGCCCCGCTGGGAAAAATACCAAAAGTTTGTGGCCTACCAAGGG
CAATACCTTACACACGGAGGCCGAGGCGTTGCTAGGGTTGGAGCGTGACC
TTTTTCGAGATTGGTTCATTTACGTATTCGAAGGACCGGAGGAAAGGGGA
AGAGAGGAGTTTTGGGCCACACTTTTACAAGTGGAGACTGCATTGGCCAA
AACTAGTGATAATCCTTGGTTCCTACCGGGGACGGACCCATCCTTAGTTG
ATATTGTCTTCGCACCGAAAGTTGAGAGGATGGTGGCATCGTGTCTGTAT
TGGAAAGGGATGACTCTGCGGGGGCATGCCGAGCTCCCAGCGCTAGGCAA
GTGGTTGGACGCGCTGGATCGACGACCCAGTTATGCTGCGATCAAGGCCG
ATTTCTTCTCTCTCGTTAATGGCTTGGAGCCCTTGTTTGGTCGGGCGTAC
GGTGTGGAGACGTCGGAAGTGAAGGAAATTCAACGCAAAATCGATGGCCT
CCATTATACCTCTTGGCGTCTCCCTGTGTCGGCCGAGGAAAATATTCGAG
AGTATCTTCCGCCCGACACACAGCCTTCCGAGAGCTACGCGCGGCAAAGA
GCGGCAGTTCGCCTGATTTTGAACAATAAACGATTGCCTCGGTATATGGC
GCGTGCTTTAGGGACACCAGGGCCCGAACATCGTAGCCCGCTGGCGGATC
CTCAAAATGCCGTTGATGAGTGGGTGTTACCAGAAGTGGATGCTGCGTAT
CGATATCTCGTTTTGGCATTGCTCCGAGGAAAGGAGGTAGTGGCGCCGTT
GGTGGCTGCTGATAAGGCAGCGGCGGATACGATTTATGGAGGGCCGATAG
AGGAGGCGAGGGCGGCGAGGGGGAGGATTGTGGCGTGCTTGAATTATTTG
AAGTTTCGGGTGGGGGTGCCCAGAGACATGACGTTGGCGGAGGCGAGGCA
GGTGAGGGGGACGTTGACGTGGTTGGTCGAGGCTTTGAAATGA

Coding sequence (CDS) from alignment at chr9:784354..786096-

>NO09G02630.1 ID=NO09G02630.1|Name=NO09G02630.1|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at chr9:784354..786096- (Nannochloropsis oceanica)
ATGACGGAAAGCTTGCAGAAACGGCGCGCAGTGCGCGTTCCACTGGTGGC
ATTGCTAGCTCTGGTCCTGCACATCACGCAAACAAGCCACGCATTCCTCA
AGCAACCTCCTCTCTCTAGTCACCATCGTCCGCGTCGTCGTCACCAGCAG
CATGCGCCCGCCTCTGCCTCCCCGACGTCCTTGGCGCTCTTCAAGGGTGT
GCGTGACATCTTTTCTCGGCGGCAAAAAAGGGGTGAGAATCCGGAAATCC
CACCAGATGAGGAGAACATGACCAAGTACGAACGCTTTCGTCAAGTCATT
CCTCTCCCACCTGTGGGCGAGCGCCGTCGCTACTCGCTTGGCGTAGGTTC
CTCACGCTTGCCCAGCATCGAAGATTTGTGGGCCGAGGCTTGGCCAACGA
TTGCCTGTGGCGACGCCATGGAACGACGGGATGCGCTGAACGAAGGAAGT
GGGCCTCCAGATGCGGAGGCATTGGTACGGAGGTTCGGCCAGGAGAGTGC
AACGATTCAAACGGTGTTCTACAAGGACGCCGCTTCCTGGTGTCCGTACT
GCGCCTCAGTATGGATGATGCTGGAAGAGAAGCAGCTACCTTACACCATG
AAACGCATTAATCTGTTGTCGTACGGTGAGAAGCCCGAGTGGTTATACGA
CGTCTCCGGGACGGGTTTAATGCCCGTTCTTGAAGTAGGGGGGCGCATTC
TTCGAGAATCGGTCGACATTTGCAAATTTATTGATTGGTGGCGCGGAAAT
GACATAAGCCCCGCTGGGAAAAATACCAAAAGTTTGTGGCCTACCAAGGG
CAATACCTTACACACGGAGGCCGAGGCGTTGCTAGGGTTGGAGCGTGACC
TTTTTCGAGATTGGTTCATTTACGTATTCGAAGGACCGGAGGAAAGGGGA
AGAGAGGAGTTTTGGGCCACACTTTTACAAGTGGAGACTGCATTGGCCAA
AACTAGTGATAATCCTTGGTTCCTACCGGGGACGGACCCATCCTTAGTTG
ATATTGTCTTCGCACCGAAAGTTGAGAGGATGGTGGCATCGTGTCTGTAT
TGGAAAGGGATGACTCTGCGGGGGCATGCCGAGCTCCCAGCGCTAGGCAA
GTGGTTGGACGCGCTGGATCGACGACCCAGTTATGCTGCGATCAAGGCCG
ATTTCTTCTCTCTCGTTAATGGCTTGGAGCCCTTGTTTGGTCGGGCGTAC
GGTGTGGAGACGTCGGAAGTGAAGGAAATTCAACGCAAAATCGATGGCCT
CCATTATACCTCTTGGCGTCTCCCTGTGTCGGCCGAGGAAAATATTCGAG
AGTATCTTCCGCCCGACACACAGCCTTCCGAGAGCTACGCGCGGCAAAGA
GCGGCAGTTCGCCTGATTTTGAACAATAAACGATTGCCTCGGTATATGGC
GCGTGCTTTAGGGACACCAGGGCCCGAACATCGTAGCCCGCTGGCGGATC
CTCAAAATGCCGTTGATGAGTGGGTGTTACCAGAAGTGGATGCTGCGTAT
CGATATCTCGTTTTGGCATTGCTCCGAGGAAAGGAGGTAGTGGCGCCGTT
GGTGGCTGCTGATAAGGCAGCGGCGGATACGATTTATGGAGGGCCGATAG
AGGAGGCGAGGGCGGCGAGGGGGAGGATTGTGGCGTGCTTGAATTATTTG
AAGTTTCGGGTGGGGGTGCCCAGAGACATGACGTTGGCGGAGGCGAGGCA
GGTGAGGGGGACGTTGACGTGGTTGGTCGAGGCTTTGAAATGA

Synonyms

Publications