|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:743973..746757 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G02490.1 vs.
Match: EWM27574.1 (two-component response regulator arr12 [Nannochloropsis gaditana]) HSP 1 Score: 441.8 bits (1135), Expect = 2.900e-120 Identity = 314/527 (59.58%), Postives = 353/527 (66.98%), Query Frame = 0
Query: 3 DSMAGGNKRRRHPSSSSSSSSSRQLQTLHYPPPDPSGGGGGGEGSAGPNHYHQRASETASVTSESSINNNSKARKRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFASGGGGGGGVTLACMRGREDEGGMSRDDSASSLNSMGGGDGRGGLESRAGDEDAFRGQMNLIRDCIQMQTGFQSVLRQALMQQTQLQQQLQAHLQALGFDGPAARAAAAAAA---LGGTGSPSGPSAAPV------EGKGGRSSNEHHMYQQQPQQQAAHTLMPMRGQQSPIRGQQQQQQQQQHLQLPPEGRRPLPGVRSSGRGGGGGVVAGGGKRSAEELMQEEMREHMDMHRQLVLRKNAQISQYEDGAKRAAAAVAAGGLHGLVGGGGASGVGIPSSSTGGGDRGGGGGGEGKATVSSPGISEHAAMAQHQSGGGGVGSVGLHAQVAAATTGMGGGVGGGGGGAGHPAGLDLDVDLSSFRWNEDEDNLFSFLMDNPVG 521
D + G+KRRRH +SS+R Q H G EG AGP H ++ ASE ASVTSESS KA+KRFVWPDDLHRDFVAAIFDVGLKCASPKTI+EMM+NTK+LTPDHIKSHLQKYRLHRERAREEFLQHFGKNPF +G G G L C +G + GG+SRD SASSL+S+ G GR ++ + GDEDAFRGQ+NLIRDCIQMQ GFQSVLRQALMQQTQLQQQLQAHLQALGFDGP+AR AAAA A LG PS PSA P+ EGK G S + YQ + Q SP + QQQQ Q RRP G GG + GGGKRSAEELMQEEMREHMDMHRQLVLRKNAQISQYEDGAK AAAA AA + GL GG SG G+P+S G GGGG G A PG++E+ +A H V S G+ +A T GG+ G GHP GLDL+VDL+SFRWNEDEDNLFSFLMD+PVG
Sbjct: 2 DELMTGSKRRRH------ASSARHQQLNHL--------ADGTEGGAGP-HQYRGASENASVTSESS-----KAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVAGAAGTG---LVCAKG--EAGGVSRDGSASSLDSVNGIGGRAEMDHQ-GDEDAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHLQALGFDGPSARMAAAAGAREALGSAAVPSSPSAGPLSIPVTAEGKAGGSDEAQYHYQYEGHSQGQ--------PHSPAQAHVNQQQQAQV-------RRPNTG------SGGHMSLPGGGKRSAEELMQEEMREHMDMHRQLVLRKNAQISQYEDGAKMAAAAAAA--VQGL-SGGPVSGAGLPASYLG----VSGGGGNGMA---HPGMTENVPVAPHLPASASVASSGM--GLAGPTPVAPGGMITG----GHP-GLDLEVDLASFRWNEDEDNLFSFLMDHPVG 464
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G02490.1 ID=NO09G02490.1|Name=NO09G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2452bp AGATCGCCGCAACCCAAACCCGCTGCTGACCCGACCAAGGTGCAGAGAGG CGTGGTAGAGATGCAGGCCGCGAGTAGTCGGGCAAGCCACTTCATCACCC TATTTTGACAGCGTCTTTCACCGTCCTTGGACCACAGGCGGTCACTCTGC AGCGGGAGGTAATTCCGAACCCAAGATAGCCACAAGTATCGCAGGCTTGT CCTCGCGGAGTGATCCTTTGAGTGGAAGTAGAGCAAACAACGACGGAAAG GACATTTCCCTCCCTTGACGCGGCAGGGGATGGACGATTCGATGGCCGGC GGCAACAAACGGCGACGGCATCCCTCCTCATCCTCCTCCTCGTCCTCCTC TCGACAGCTACAAACCCTCCATTATCCACCACCAGACCCTAGCGGTGGCG GCGGTGGGGGAGAGGGAAGCGCGGGTCCTAACCATTACCACCAACGGGCC TCGGAAACTGCCTCGGTGACAAGTGAGAGCAGCATCAATAACAACAGCAA GGCCAGAAAACGTTTCGTTTGGCCCGATGACCTGCATCGTGACTTCGTTG CTGCCATTTTCGATGTGGGCTTAAAATGCGCTTCTCCGAAAACAATATTA GAAATGATGAACAACACCAAGGACTTGACGCCCGATCACATAAAAAGTCA CTTGCAGAAATACCGTTTGCACAGGGAGAGGGCCCGGGAGGAATTTTTGC AGCATTTTGGGAAGAACCCTTTTGCATCTGGTGGGGGTGGAGGAGGTGGC GTCACATTGGCGTGTATGAGGGGAAGAGAAGATGAAGGAGGGATGTCAAG GGATGACTCTGCATCAAGCTTGAACAGTATGGGTGGTGGAGATGGAAGAG GAGGGCTGGAGAGTAGGGCGGGGGATGAGGATGCGTTTAGAGGACAGATG AATTTGATTCGCGATTGCATTCAGATGCAAACTGGGTTTCAGTCTGTGCT CCGGCAAGCTCTCATGCAGCAGACACAGCTCCAGCAGCAGTTGCAGGCAC ACTTACAAGCATTGGGTTTCGATGGGCCGGCAGCGCGAGCAGCAGCAGCT GCAGCGGCACTAGGAGGAACGGGAAGTCCTTCTGGGCCTTCAGCCGCGCC AGTGGAGGGTAAGGGGGGGAGAAGCAGCAATGAGCACCACATGTACCAGC AGCAGCCGCAGCAGCAGGCGGCGCACACGCTCATGCCCATGCGCGGTCAG CAGTCACCCATACGCGGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCT ACAGCTTCCGCCAGAAGGCCGTCGGCCCCTGCCAGGTGTCCGTTCCAGTG GACGAGGAGGAGGAGGGGGGGTTGTCGCGGGGGGAGGAAAACGGTCTGCA GAGGAGCTGATGCAGGAAGAAATGAGGGAACACATGGACATGCACCGCCA GTTGGTGCTGAGAAAAAATGCTCAAATATCTCAGTATGAAGATGGGGCGA AGAGAGCTGCAGCAGCAGTGGCAGCAGGAGGTTTGCATGGTTTAGTAGGA GGAGGAGGAGCGTCAGGAGTGGGGATACCGTCTTCGTCGACAGGTGGTGG TGACAGAGGAGGAGGAGGTGGAGGAGAAGGGAAAGCAACTGTGTCCTCTC CAGGCATATCGGAGCACGCGGCGATGGCACAGCATCAATCTGGGGGAGGT GGTGTAGGAAGTGTTGGCTTGCACGCTCAGGTGGCGGCAGCAACGACAGG GATGGGGGGAGGAGTAGGAGGAGGAGGCGGGGGGGCAGGGCACCCAGCAG GATTAGATCTTGACGTGGATTTGTCCTCGTTTAGGTGGAATGAAGATGAA GACAACTTATTTAGTTTTTTGATGGACAATCCCGTAGGCTAGGGAGGGAG GAAGGGAGGGTAGGGAAAGGGAGGGGAAGAGAGAAGGTTTTATACAATGG ATAGGGGGGAAGGGAGAATACGGAAAGGGAGGGGAAGGGGGAAGAATTTA TAGAATGGATATGCGATTTAAAAGATAAAGCGAAGAGATCGACTTCGACC ACCATAGGAGAGAGGGAGGGAGGGAGGAAGACAAGAGACTGTTTCGTGGT GCGGATCAAAGGCGAGGGCAAGAGCGAGTACAGATATAAACCATCAGATG GTCTTATAGTTCTATCTCCACCGCGTCAACACATTGAGTTAAGCCGCCGT ATGCGAACTGAAGCTCCCACCGCAGAATCGAAATGGAAGCCATAGCACAA AGCCACGATGACTCCACGCATTGATTTTACCCGATAACCACCTCCACAAC AAGATCAAGGCATGAAAATTCAAGTCATAAACCTAAATATCGGCCACCAG TTTGTCAAACAGAACATCACTGTTGCGTGCCGCTGATTAGGAGGGCGTAG ACACTGTGGACCCCACGACTATCACAAAATCATTTCCTTTCTTGGAGTAA ATATGTTCAAAAATTCAAAAAAGCAAAAACAACAAGCAGGCATACAGCAG TA back to topprotein sequence of NO09G02490.1 >NO09G02490.1-protein ID=NO09G02490.1-protein|Name=NO09G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp MDDSMAGGNKRRRHPSSSSSSSSSRQLQTLHYPPPDPSGGGGGGEGSAGP NHYHQRASETASVTSESSINNNSKARKRFVWPDDLHRDFVAAIFDVGLKC ASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFAS GGGGGGGVTLACMRGREDEGGMSRDDSASSLNSMGGGDGRGGLESRAGDE DAFRGQMNLIRDCIQMQTGFQSVLRQALMQQTQLQQQLQAHLQALGFDGP AARAAAAAAALGGTGSPSGPSAAPVEGKGGRSSNEHHMYQQQPQQQAAHT LMPMRGQQSPIRGQQQQQQQQQHLQLPPEGRRPLPGVRSSGRGGGGGVVA GGGKRSAEELMQEEMREHMDMHRQLVLRKNAQISQYEDGAKRAAAAVAAG GLHGLVGGGGASGVGIPSSSTGGGDRGGGGGGEGKATVSSPGISEHAAMA QHQSGGGGVGSVGLHAQVAAATTGMGGGVGGGGGGAGHPAGLDLDVDLSS FRWNEDEDNLFSFLMDNPVG* back to topmRNA from alignment at chr9:743973..746757+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G02490.1 ID=NO09G02490.1|Name=NO09G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2785bp|location=Sequence derived from alignment at chr9:743973..746757+ (Nannochloropsis oceanica) AGATCGCCGCAACCCAAACCCGCTGCTGACCCGACCAAGGTGCAGAGAGG
CGTGGTAGAGATGCAGGCCGCGAGTAGTCGGGCAAGCCACTTCATCACCC
TATTTTGACAGCGTCTTTCACCGTCCTTGGACCACAGGCGGTCACTCTGC
AGCGGGAGGTAATTCCGAACCCAAGATAGCCACAAGTATCGCAGGCTTGT
CCTCGCGGAGTGATCCTTTGAGTGGAAGTAGAGGTACGTGCGTGCTCTGG
GTAGGGGATGGGGCATACCGGTCAACTTGGCAAGTTGTTAGAAGAGAGGG
TATCGGGTTTGTGGCATATATATGGTTATGGTATCATCCAGATTGACGTC
CCATTTTTGTGCCGTGGCTACTATTTGAATCTAGGCTCCACATTGGGAGA
AAATGCGTTTGTTGCAAGGCACTTGCGACTACTTTCTATCCCGCTAGTGT
CTGCCAGTGTGCTGTGTGCTGTTTTAATTCTGCGTGGGACACCTCATCTG
GAGTATTTTTCACGCAAAGCAATCATCTATGCCCTCCCCCCCCCTCCCCC
CTCTTTTTCGCGACAGCAAACAACGACGGAAAGGACATTTCCCTCCCTTG
ACGCGGCAGGGGATGGACGATTCGATGGCCGGCGGCAACAAACGGCGACG
GCATCCCTCCTCATCCTCCTCCTCGTCCTCCTCTCGACAGCTACAAACCC
TCCATTATCCACCACCAGACCCTAGCGGTGGCGGCGGTGGGGGAGAGGGA
AGCGCGGGTCCTAACCATTACCACCAACGGGCCTCGGAAACTGCCTCGGT
GACAAGTGAGAGCAGCATCAATAACAACAGCAAGGCCAGAAAACGTTTCG
TTTGGCCCGATGACCTGCATCGTGACTTCGTTGCTGCCATTTTCGATGTG
GGCTTAAAATGCGCTTCTCCGAAAACAATATTAGAAATGATGAACAACAC
CAAGGACTTGACGCCCGATCACATAAAAAGTCACTTGCAGAAATACCGTT
TGCACAGGGAGAGGGCCCGGGAGGAATTTTTGCAGCATTTTGGGAAGAAC
CCTTTTGCATCTGGTGGGGGTGGAGGAGGTGGCGTCACATTGGCGTGTAT
GAGGGGAAGAGAAGATGAAGGAGGGATGTCAAGGGATGACTCTGCATCAA
GCTTGAACAGTATGGGTGGTGGAGATGGAAGAGGAGGGCTGGAGAGTAGG
GCGGGGGATGAGGATGCGTTTAGAGGACAGATGAATTTGATTCGCGATTG
CATTCAGATGCAAACTGGGTTTCAGTCTGTGCTCCGGCAAGCTCTCATGC
AGCAGACACAGCTCCAGCAGCAGTTGCAGGCACACTTACAAGCATTGGGT
TTCGATGGGCCGGCAGCGCGAGCAGCAGCAGCTGCAGCGGCACTAGGAGG
AACGGGAAGTCCTTCTGGGCCTTCAGCCGCGCCAGTGGAGGGTAAGGGGG
GGAGAAGCAGCAATGAGCACCACATGTACCAGCAGCAGCCGCAGCAGCAG
GCGGCGCACACGCTCATGCCCATGCGCGGTCAGCAGTCACCCATACGCGG
CCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCTACAGCTTCCGCCAGAAG
GCCGTCGGCCCCTGCCAGGTGTCCGTTCCAGTGGACGAGGAGGAGGAGGG
GGGGTTGTCGCGGGGGGAGGAAAACGGTCTGCAGAGGAGCTGATGCAGGA
AGAAATGAGGGAACACATGGACATGCACCGCCAGTTGGTGCTGAGAAAAA
ATGCTCAAATATCTCAGTATGAAGATGGGGCGAAGAGAGCTGCAGCAGCA
GTGGCAGCAGGAGGTTTGCATGGTTTAGTAGGAGGAGGAGGAGCGTCAGG
AGTGGGGATACCGTCTTCGTCGACAGGTGGTGGTGACAGAGGAGGAGGAG
GTGGAGGAGAAGGGAAAGCAACTGTGTCCTCTCCAGGCATATCGGAGCAC
GCGGCGATGGCACAGCATCAATCTGGGGGAGGTGGTGTAGGAAGTGTTGG
CTTGCACGCTCAGGTGGCGGCAGCAACGACAGGGATGGGGGGAGGAGTAG
GAGGAGGAGGCGGGGGGGCAGGGCACCCAGCAGGATTAGATCTTGACGTG
GATTTGTCCTCGTTTAGGTGGAATGAAGATGAAGACAACTTATTTAGTTT
TTTGATGGACAATCCCGTAGGCTAGGGAGGGAGGAAGGGAGGGTAGGGAA
AGGGAGGGGAAGAGAGAAGGTTTTATACAATGGATAGGGGGGAAGGGAGA
ATACGGAAAGGGAGGGGAAGGGGGAAGAATTTATAGAATGGATATGCGAT
TTAAAAGATAAAGCGAAGAGATCGACTTCGACCACCATAGGAGAGAGGGA
GGGAGGGAGGAAGACAAGAGACTGTTTCGTGGTGCGGATCAAAGGCGAGG
GCAAGAGCGAGTACAGATATAAACCATCAGATGGTCTTATAGTTCTATCT
CCACCGCGTCAACACATTGAGTTAAGCCGCCGTATGCGAACTGAAGCTCC
CACCGCAGAATCGAAATGGAAGCCATAGCACAAAGCCACGATGACTCCAC
GCATTGATTTTACCCGATAACCACCTCCACAACAAGATCAAGGCATGAAA
ATTCAAGTCATAAACCTAAATATCGGCCACCAGTTTGTCAAACAGAACAT
CACTGTTGCGTGCCGCTGATTAGGAGGGCGTAGACACTGTGGACCCCACG
ACTATCACAAAATCATTTCCTTTCTTGGAGTAAATATGTTCAAAAATTCA
AAAAAGCAAAAACAACAAGCAGGCATACAGCAGTA back to topCoding sequence (CDS) from alignment at chr9:743973..746757+ >NO09G02490.1 ID=NO09G02490.1|Name=NO09G02490.1|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at chr9:743973..746757+ (Nannochloropsis oceanica) ATGGACGATTCGATGGCCGGCGGCAACAAACGGCGACGGCATCCCTCCTC ATCCTCCTCCTCGTCCTCCTCTCGACAGCTACAAACCCTCCATTATCCAC CACCAGACCCTAGCGGTGGCGGCGGTGGGGGAGAGGGAAGCGCGGGTCCT AACCATTACCACCAACGGGCCTCGGAAACTGCCTCGGTGACAAGTGAGAG CAGCATCAATAACAACAGCAAGGCCAGAAAACGTTTCGTTTGGCCCGATG ACCTGCATCGTGACTTCGTTGCTGCCATTTTCGATGTGGGCTTAAAATGC GCTTCTCCGAAAACAATATTAGAAATGATGAACAACACCAAGGACTTGAC GCCCGATCACATAAAAAGTCACTTGCAGAAATACCGTTTGCACAGGGAGA GGGCCCGGGAGGAATTTTTGCAGCATTTTGGGAAGAACCCTTTTGCATCT GGTGGGGGTGGAGGAGGTGGCGTCACATTGGCGTGTATGAGGGGAAGAGA AGATGAAGGAGGGATGTCAAGGGATGACTCTGCATCAAGCTTGAACAGTA TGGGTGGTGGAGATGGAAGAGGAGGGCTGGAGAGTAGGGCGGGGGATGAG GATGCGTTTAGAGGACAGATGAATTTGATTCGCGATTGCATTCAGATGCA AACTGGGTTTCAGTCTGTGCTCCGGCAAGCTCTCATGCAGCAGACACAGC TCCAGCAGCAGTTGCAGGCACACTTACAAGCATTGGGTTTCGATGGGCCG GCAGCGCGAGCAGCAGCAGCTGCAGCGGCACTAGGAGGAACGGGAAGTCC TTCTGGGCCTTCAGCCGCGCCAGTGGAGGGTAAGGGGGGGAGAAGCAGCA ATGAGCACCACATGTACCAGCAGCAGCCGCAGCAGCAGGCGGCGCACACG CTCATGCCCATGCGCGGTCAGCAGTCACCCATACGCGGCCAGCAGCAGCA GCAGCAGCAGCAGCAGCATCTACAGCTTCCGCCAGAAGGCCGTCGGCCCC TGCCAGGTGTCCGTTCCAGTGGACGAGGAGGAGGAGGGGGGGTTGTCGCG GGGGGAGGAAAACGGTCTGCAGAGGAGCTGATGCAGGAAGAAATGAGGGA ACACATGGACATGCACCGCCAGTTGGTGCTGAGAAAAAATGCTCAAATAT CTCAGTATGAAGATGGGGCGAAGAGAGCTGCAGCAGCAGTGGCAGCAGGA GGTTTGCATGGTTTAGTAGGAGGAGGAGGAGCGTCAGGAGTGGGGATACC GTCTTCGTCGACAGGTGGTGGTGACAGAGGAGGAGGAGGTGGAGGAGAAG GGAAAGCAACTGTGTCCTCTCCAGGCATATCGGAGCACGCGGCGATGGCA CAGCATCAATCTGGGGGAGGTGGTGTAGGAAGTGTTGGCTTGCACGCTCA GGTGGCGGCAGCAACGACAGGGATGGGGGGAGGAGTAGGAGGAGGAGGCG GGGGGGCAGGGCACCCAGCAGGATTAGATCTTGACGTGGATTTGTCCTCG TTTAGGTGGAATGAAGATGAAGACAACTTATTTAGTTTTTTGATGGACAA TCCCGTAGGCTAG back to top
|