NO09G02490.1, NO09G02490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02490.1
Unique NameNO09G02490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2452
Alignment locationchr9:743973..746757 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:743973..746757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G02490.1 vs.
Match: EWM27574.1 (two-component response regulator arr12 [Nannochloropsis gaditana])

HSP 1 Score: 441.8 bits (1135), Expect = 2.900e-120
Identity = 314/527 (59.58%), Postives = 353/527 (66.98%), Query Frame = 0
Query:    3 DSMAGGNKRRRHPSSSSSSSSSRQLQTLHYPPPDPSGGGGGGEGSAGPNHYHQRASETASVTSESSINNNSKARKRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFASGGGGGGGVTLACMRGREDEGGMSRDDSASSLNSMGGGDGRGGLESRAGDEDAFRGQMNLIRDCIQMQTGFQSVLRQALMQQTQLQQQLQAHLQALGFDGPAARAAAAAAA---LGGTGSPSGPSAAPV------EGKGGRSSNEHHMYQQQPQQQAAHTLMPMRGQQSPIRGQQQQQQQQQHLQLPPEGRRPLPGVRSSGRGGGGGVVAGGGKRSAEELMQEEMREHMDMHRQLVLRKNAQISQYEDGAKRAAAAVAAGGLHGLVGGGGASGVGIPSSSTGGGDRGGGGGGEGKATVSSPGISEHAAMAQHQSGGGGVGSVGLHAQVAAATTGMGGGVGGGGGGAGHPAGLDLDVDLSSFRWNEDEDNLFSFLMDNPVG 521
            D +  G+KRRRH      +SS+R  Q  H           G EG AGP H ++ ASE ASVTSESS     KA+KRFVWPDDLHRDFVAAIFDVGLKCASPKTI+EMM+NTK+LTPDHIKSHLQKYRLHRERAREEFLQHFGKNPF +G  G G   L C +G  + GG+SRD SASSL+S+ G  GR  ++ + GDEDAFRGQ+NLIRDCIQMQ GFQSVLRQALMQQTQLQQQLQAHLQALGFDGP+AR AAAA A   LG    PS PSA P+      EGK G S    + YQ +   Q            SP +    QQQQ Q        RRP  G       GG   + GGGKRSAEELMQEEMREHMDMHRQLVLRKNAQISQYEDGAK AAAA AA  + GL  GG  SG G+P+S  G      GGGG G A    PG++E+  +A H      V S G+   +A  T    GG+  G    GHP GLDL+VDL+SFRWNEDEDNLFSFLMD+PVG
Sbjct:    2 DELMTGSKRRRH------ASSARHQQLNHL--------ADGTEGGAGP-HQYRGASENASVTSESS-----KAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVAGAAGTG---LVCAKG--EAGGVSRDGSASSLDSVNGIGGRAEMDHQ-GDEDAFRGQLNLIRDCIQMQAGFQSVLRQALMQQTQLQQQLQAHLQALGFDGPSARMAAAAGAREALGSAAVPSSPSAGPLSIPVTAEGKAGGSDEAQYHYQYEGHSQGQ--------PHSPAQAHVNQQQQAQV-------RRPNTG------SGGHMSLPGGGKRSAEELMQEEMREHMDMHRQLVLRKNAQISQYEDGAKMAAAAAAA--VQGL-SGGPVSGAGLPASYLG----VSGGGGNGMA---HPGMTENVPVAPHLPASASVASSGM--GLAGPTPVAPGGMITG----GHP-GLDLEVDLASFRWNEDEDNLFSFLMDHPVG 464          
The following BLAST results are available for this feature:
BLAST of NO09G02490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27574.12.900e-12059.58two-component response regulator arr12 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02490NO09G02490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02490.1NO09G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02490.1.cds1NO09G02490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02490.1 ID=NO09G02490.1|Name=NO09G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2452bp
AGATCGCCGCAACCCAAACCCGCTGCTGACCCGACCAAGGTGCAGAGAGG
CGTGGTAGAGATGCAGGCCGCGAGTAGTCGGGCAAGCCACTTCATCACCC
TATTTTGACAGCGTCTTTCACCGTCCTTGGACCACAGGCGGTCACTCTGC
AGCGGGAGGTAATTCCGAACCCAAGATAGCCACAAGTATCGCAGGCTTGT
CCTCGCGGAGTGATCCTTTGAGTGGAAGTAGAGCAAACAACGACGGAAAG
GACATTTCCCTCCCTTGACGCGGCAGGGGATGGACGATTCGATGGCCGGC
GGCAACAAACGGCGACGGCATCCCTCCTCATCCTCCTCCTCGTCCTCCTC
TCGACAGCTACAAACCCTCCATTATCCACCACCAGACCCTAGCGGTGGCG
GCGGTGGGGGAGAGGGAAGCGCGGGTCCTAACCATTACCACCAACGGGCC
TCGGAAACTGCCTCGGTGACAAGTGAGAGCAGCATCAATAACAACAGCAA
GGCCAGAAAACGTTTCGTTTGGCCCGATGACCTGCATCGTGACTTCGTTG
CTGCCATTTTCGATGTGGGCTTAAAATGCGCTTCTCCGAAAACAATATTA
GAAATGATGAACAACACCAAGGACTTGACGCCCGATCACATAAAAAGTCA
CTTGCAGAAATACCGTTTGCACAGGGAGAGGGCCCGGGAGGAATTTTTGC
AGCATTTTGGGAAGAACCCTTTTGCATCTGGTGGGGGTGGAGGAGGTGGC
GTCACATTGGCGTGTATGAGGGGAAGAGAAGATGAAGGAGGGATGTCAAG
GGATGACTCTGCATCAAGCTTGAACAGTATGGGTGGTGGAGATGGAAGAG
GAGGGCTGGAGAGTAGGGCGGGGGATGAGGATGCGTTTAGAGGACAGATG
AATTTGATTCGCGATTGCATTCAGATGCAAACTGGGTTTCAGTCTGTGCT
CCGGCAAGCTCTCATGCAGCAGACACAGCTCCAGCAGCAGTTGCAGGCAC
ACTTACAAGCATTGGGTTTCGATGGGCCGGCAGCGCGAGCAGCAGCAGCT
GCAGCGGCACTAGGAGGAACGGGAAGTCCTTCTGGGCCTTCAGCCGCGCC
AGTGGAGGGTAAGGGGGGGAGAAGCAGCAATGAGCACCACATGTACCAGC
AGCAGCCGCAGCAGCAGGCGGCGCACACGCTCATGCCCATGCGCGGTCAG
CAGTCACCCATACGCGGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCT
ACAGCTTCCGCCAGAAGGCCGTCGGCCCCTGCCAGGTGTCCGTTCCAGTG
GACGAGGAGGAGGAGGGGGGGTTGTCGCGGGGGGAGGAAAACGGTCTGCA
GAGGAGCTGATGCAGGAAGAAATGAGGGAACACATGGACATGCACCGCCA
GTTGGTGCTGAGAAAAAATGCTCAAATATCTCAGTATGAAGATGGGGCGA
AGAGAGCTGCAGCAGCAGTGGCAGCAGGAGGTTTGCATGGTTTAGTAGGA
GGAGGAGGAGCGTCAGGAGTGGGGATACCGTCTTCGTCGACAGGTGGTGG
TGACAGAGGAGGAGGAGGTGGAGGAGAAGGGAAAGCAACTGTGTCCTCTC
CAGGCATATCGGAGCACGCGGCGATGGCACAGCATCAATCTGGGGGAGGT
GGTGTAGGAAGTGTTGGCTTGCACGCTCAGGTGGCGGCAGCAACGACAGG
GATGGGGGGAGGAGTAGGAGGAGGAGGCGGGGGGGCAGGGCACCCAGCAG
GATTAGATCTTGACGTGGATTTGTCCTCGTTTAGGTGGAATGAAGATGAA
GACAACTTATTTAGTTTTTTGATGGACAATCCCGTAGGCTAGGGAGGGAG
GAAGGGAGGGTAGGGAAAGGGAGGGGAAGAGAGAAGGTTTTATACAATGG
ATAGGGGGGAAGGGAGAATACGGAAAGGGAGGGGAAGGGGGAAGAATTTA
TAGAATGGATATGCGATTTAAAAGATAAAGCGAAGAGATCGACTTCGACC
ACCATAGGAGAGAGGGAGGGAGGGAGGAAGACAAGAGACTGTTTCGTGGT
GCGGATCAAAGGCGAGGGCAAGAGCGAGTACAGATATAAACCATCAGATG
GTCTTATAGTTCTATCTCCACCGCGTCAACACATTGAGTTAAGCCGCCGT
ATGCGAACTGAAGCTCCCACCGCAGAATCGAAATGGAAGCCATAGCACAA
AGCCACGATGACTCCACGCATTGATTTTACCCGATAACCACCTCCACAAC
AAGATCAAGGCATGAAAATTCAAGTCATAAACCTAAATATCGGCCACCAG
TTTGTCAAACAGAACATCACTGTTGCGTGCCGCTGATTAGGAGGGCGTAG
ACACTGTGGACCCCACGACTATCACAAAATCATTTCCTTTCTTGGAGTAA
ATATGTTCAAAAATTCAAAAAAGCAAAAACAACAAGCAGGCATACAGCAG
TA
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protein sequence of NO09G02490.1

>NO09G02490.1-protein ID=NO09G02490.1-protein|Name=NO09G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MDDSMAGGNKRRRHPSSSSSSSSSRQLQTLHYPPPDPSGGGGGGEGSAGP
NHYHQRASETASVTSESSINNNSKARKRFVWPDDLHRDFVAAIFDVGLKC
ASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFAS
GGGGGGGVTLACMRGREDEGGMSRDDSASSLNSMGGGDGRGGLESRAGDE
DAFRGQMNLIRDCIQMQTGFQSVLRQALMQQTQLQQQLQAHLQALGFDGP
AARAAAAAAALGGTGSPSGPSAAPVEGKGGRSSNEHHMYQQQPQQQAAHT
LMPMRGQQSPIRGQQQQQQQQQHLQLPPEGRRPLPGVRSSGRGGGGGVVA
GGGKRSAEELMQEEMREHMDMHRQLVLRKNAQISQYEDGAKRAAAAVAAG
GLHGLVGGGGASGVGIPSSSTGGGDRGGGGGGEGKATVSSPGISEHAAMA
QHQSGGGGVGSVGLHAQVAAATTGMGGGVGGGGGGAGHPAGLDLDVDLSS
FRWNEDEDNLFSFLMDNPVG*
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mRNA from alignment at chr9:743973..746757+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02490.1 ID=NO09G02490.1|Name=NO09G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2785bp|location=Sequence derived from alignment at chr9:743973..746757+ (Nannochloropsis oceanica)
AGATCGCCGCAACCCAAACCCGCTGCTGACCCGACCAAGGTGCAGAGAGG CGTGGTAGAGATGCAGGCCGCGAGTAGTCGGGCAAGCCACTTCATCACCC TATTTTGACAGCGTCTTTCACCGTCCTTGGACCACAGGCGGTCACTCTGC AGCGGGAGGTAATTCCGAACCCAAGATAGCCACAAGTATCGCAGGCTTGT CCTCGCGGAGTGATCCTTTGAGTGGAAGTAGAGGTACGTGCGTGCTCTGG GTAGGGGATGGGGCATACCGGTCAACTTGGCAAGTTGTTAGAAGAGAGGG TATCGGGTTTGTGGCATATATATGGTTATGGTATCATCCAGATTGACGTC CCATTTTTGTGCCGTGGCTACTATTTGAATCTAGGCTCCACATTGGGAGA AAATGCGTTTGTTGCAAGGCACTTGCGACTACTTTCTATCCCGCTAGTGT CTGCCAGTGTGCTGTGTGCTGTTTTAATTCTGCGTGGGACACCTCATCTG GAGTATTTTTCACGCAAAGCAATCATCTATGCCCTCCCCCCCCCTCCCCC CTCTTTTTCGCGACAGCAAACAACGACGGAAAGGACATTTCCCTCCCTTG ACGCGGCAGGGGATGGACGATTCGATGGCCGGCGGCAACAAACGGCGACG GCATCCCTCCTCATCCTCCTCCTCGTCCTCCTCTCGACAGCTACAAACCC TCCATTATCCACCACCAGACCCTAGCGGTGGCGGCGGTGGGGGAGAGGGA AGCGCGGGTCCTAACCATTACCACCAACGGGCCTCGGAAACTGCCTCGGT GACAAGTGAGAGCAGCATCAATAACAACAGCAAGGCCAGAAAACGTTTCG TTTGGCCCGATGACCTGCATCGTGACTTCGTTGCTGCCATTTTCGATGTG GGCTTAAAATGCGCTTCTCCGAAAACAATATTAGAAATGATGAACAACAC CAAGGACTTGACGCCCGATCACATAAAAAGTCACTTGCAGAAATACCGTT TGCACAGGGAGAGGGCCCGGGAGGAATTTTTGCAGCATTTTGGGAAGAAC CCTTTTGCATCTGGTGGGGGTGGAGGAGGTGGCGTCACATTGGCGTGTAT GAGGGGAAGAGAAGATGAAGGAGGGATGTCAAGGGATGACTCTGCATCAA GCTTGAACAGTATGGGTGGTGGAGATGGAAGAGGAGGGCTGGAGAGTAGG GCGGGGGATGAGGATGCGTTTAGAGGACAGATGAATTTGATTCGCGATTG CATTCAGATGCAAACTGGGTTTCAGTCTGTGCTCCGGCAAGCTCTCATGC AGCAGACACAGCTCCAGCAGCAGTTGCAGGCACACTTACAAGCATTGGGT TTCGATGGGCCGGCAGCGCGAGCAGCAGCAGCTGCAGCGGCACTAGGAGG AACGGGAAGTCCTTCTGGGCCTTCAGCCGCGCCAGTGGAGGGTAAGGGGG GGAGAAGCAGCAATGAGCACCACATGTACCAGCAGCAGCCGCAGCAGCAG GCGGCGCACACGCTCATGCCCATGCGCGGTCAGCAGTCACCCATACGCGG CCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCTACAGCTTCCGCCAGAAG GCCGTCGGCCCCTGCCAGGTGTCCGTTCCAGTGGACGAGGAGGAGGAGGG GGGGTTGTCGCGGGGGGAGGAAAACGGTCTGCAGAGGAGCTGATGCAGGA AGAAATGAGGGAACACATGGACATGCACCGCCAGTTGGTGCTGAGAAAAA ATGCTCAAATATCTCAGTATGAAGATGGGGCGAAGAGAGCTGCAGCAGCA GTGGCAGCAGGAGGTTTGCATGGTTTAGTAGGAGGAGGAGGAGCGTCAGG AGTGGGGATACCGTCTTCGTCGACAGGTGGTGGTGACAGAGGAGGAGGAG GTGGAGGAGAAGGGAAAGCAACTGTGTCCTCTCCAGGCATATCGGAGCAC GCGGCGATGGCACAGCATCAATCTGGGGGAGGTGGTGTAGGAAGTGTTGG CTTGCACGCTCAGGTGGCGGCAGCAACGACAGGGATGGGGGGAGGAGTAG GAGGAGGAGGCGGGGGGGCAGGGCACCCAGCAGGATTAGATCTTGACGTG GATTTGTCCTCGTTTAGGTGGAATGAAGATGAAGACAACTTATTTAGTTT TTTGATGGACAATCCCGTAGGCTAGGGAGGGAGGAAGGGAGGGTAGGGAA AGGGAGGGGAAGAGAGAAGGTTTTATACAATGGATAGGGGGGAAGGGAGA ATACGGAAAGGGAGGGGAAGGGGGAAGAATTTATAGAATGGATATGCGAT TTAAAAGATAAAGCGAAGAGATCGACTTCGACCACCATAGGAGAGAGGGA GGGAGGGAGGAAGACAAGAGACTGTTTCGTGGTGCGGATCAAAGGCGAGG GCAAGAGCGAGTACAGATATAAACCATCAGATGGTCTTATAGTTCTATCT CCACCGCGTCAACACATTGAGTTAAGCCGCCGTATGCGAACTGAAGCTCC CACCGCAGAATCGAAATGGAAGCCATAGCACAAAGCCACGATGACTCCAC GCATTGATTTTACCCGATAACCACCTCCACAACAAGATCAAGGCATGAAA ATTCAAGTCATAAACCTAAATATCGGCCACCAGTTTGTCAAACAGAACAT CACTGTTGCGTGCCGCTGATTAGGAGGGCGTAGACACTGTGGACCCCACG ACTATCACAAAATCATTTCCTTTCTTGGAGTAAATATGTTCAAAAATTCA AAAAAGCAAAAACAACAAGCAGGCATACAGCAGTA
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Coding sequence (CDS) from alignment at chr9:743973..746757+

>NO09G02490.1 ID=NO09G02490.1|Name=NO09G02490.1|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at chr9:743973..746757+ (Nannochloropsis oceanica)
ATGGACGATTCGATGGCCGGCGGCAACAAACGGCGACGGCATCCCTCCTC
ATCCTCCTCCTCGTCCTCCTCTCGACAGCTACAAACCCTCCATTATCCAC
CACCAGACCCTAGCGGTGGCGGCGGTGGGGGAGAGGGAAGCGCGGGTCCT
AACCATTACCACCAACGGGCCTCGGAAACTGCCTCGGTGACAAGTGAGAG
CAGCATCAATAACAACAGCAAGGCCAGAAAACGTTTCGTTTGGCCCGATG
ACCTGCATCGTGACTTCGTTGCTGCCATTTTCGATGTGGGCTTAAAATGC
GCTTCTCCGAAAACAATATTAGAAATGATGAACAACACCAAGGACTTGAC
GCCCGATCACATAAAAAGTCACTTGCAGAAATACCGTTTGCACAGGGAGA
GGGCCCGGGAGGAATTTTTGCAGCATTTTGGGAAGAACCCTTTTGCATCT
GGTGGGGGTGGAGGAGGTGGCGTCACATTGGCGTGTATGAGGGGAAGAGA
AGATGAAGGAGGGATGTCAAGGGATGACTCTGCATCAAGCTTGAACAGTA
TGGGTGGTGGAGATGGAAGAGGAGGGCTGGAGAGTAGGGCGGGGGATGAG
GATGCGTTTAGAGGACAGATGAATTTGATTCGCGATTGCATTCAGATGCA
AACTGGGTTTCAGTCTGTGCTCCGGCAAGCTCTCATGCAGCAGACACAGC
TCCAGCAGCAGTTGCAGGCACACTTACAAGCATTGGGTTTCGATGGGCCG
GCAGCGCGAGCAGCAGCAGCTGCAGCGGCACTAGGAGGAACGGGAAGTCC
TTCTGGGCCTTCAGCCGCGCCAGTGGAGGGTAAGGGGGGGAGAAGCAGCA
ATGAGCACCACATGTACCAGCAGCAGCCGCAGCAGCAGGCGGCGCACACG
CTCATGCCCATGCGCGGTCAGCAGTCACCCATACGCGGCCAGCAGCAGCA
GCAGCAGCAGCAGCAGCATCTACAGCTTCCGCCAGAAGGCCGTCGGCCCC
TGCCAGGTGTCCGTTCCAGTGGACGAGGAGGAGGAGGGGGGGTTGTCGCG
GGGGGAGGAAAACGGTCTGCAGAGGAGCTGATGCAGGAAGAAATGAGGGA
ACACATGGACATGCACCGCCAGTTGGTGCTGAGAAAAAATGCTCAAATAT
CTCAGTATGAAGATGGGGCGAAGAGAGCTGCAGCAGCAGTGGCAGCAGGA
GGTTTGCATGGTTTAGTAGGAGGAGGAGGAGCGTCAGGAGTGGGGATACC
GTCTTCGTCGACAGGTGGTGGTGACAGAGGAGGAGGAGGTGGAGGAGAAG
GGAAAGCAACTGTGTCCTCTCCAGGCATATCGGAGCACGCGGCGATGGCA
CAGCATCAATCTGGGGGAGGTGGTGTAGGAAGTGTTGGCTTGCACGCTCA
GGTGGCGGCAGCAACGACAGGGATGGGGGGAGGAGTAGGAGGAGGAGGCG
GGGGGGCAGGGCACCCAGCAGGATTAGATCTTGACGTGGATTTGTCCTCG
TTTAGGTGGAATGAAGATGAAGACAACTTATTTAGTTTTTTGATGGACAA
TCCCGTAGGCTAG
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Synonyms
Publications