NO09G02450.1, NO09G02450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02450.1
Unique NameNO09G02450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1245
Alignment locationchr9:731051..733407 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:731051..733407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02450.1 vs.
Match: EWM27539.1 (PolyU-binding-splicing factor PUF60 [Nannochloropsis gaditana])

HSP 1 Score: 141.4 bits (355), Expect = 6.500e-30
Identity = 105/190 (55.26%), Postives = 119/190 (62.63%), Query Frame = 0 
Query:  241 FEVAEEVVKGLFQNFGRIRSFSLLPDPQHTPGRLHRGYGFIDFESDEAAAAAIQAMNGFDLYGRRMKVGWAAAGGGGGGG---------AGMASYTYPPQLG--MVGGGYGGGYGGALVQHGQSMFVQQPAGGALLYQQQPLQMYQQQQPYQQQQQQ-------QQQQQQQQQQQPSAYYAQGGMSYGPG 413
            FEV+EEVV+GLFQ+FG+IRSFSLLPDPQ  PGRLHRGYGFI+F+S++AAA AIQ M GF+L GR MKVGWAA  GG GG          AG  +Y    Q    + G  YG G   A +   Q    QQ    AL+YQQ   Q  QQ Q  QQQQ Q       QQQQQQQQQQQ   YYAQ   +YGPG
Sbjct:  344 FEVSEEVVRGLFQSFGKIRSFSLLPDPQMNPGRLHRGYGFIEFDSEQAAATAIQTMQGFELQGRAMKVGWAAPVGGSGGAPPASGAPSMAGAGTYVQQQQALNLLTGQYYGQGVMPAGMYAPQPQQQQQQQPPALMYQQPQHQYLQQYQQMQQQQPQPQGQPQGQQQQQQQQQQQQQMYYAQSAAAYGPG 533
The following BLAST results are available for this feature:
BLAST of NO09G02450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27539.16.500e-3055.26PolyU-binding-splicing factor PUF60 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02450NO09G02450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02450.1NO09G02450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02450.1.cds1NO09G02450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02450.1.cds2NO09G02450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02450.1.cds3NO09G02450.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02450.1.cds4NO09G02450.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02450.1 ID=NO09G02450.1|Name=NO09G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp
ATGCCGCGCGCGAAACCAACTAAGAAGGCAGTGAAAGCCGAGCCACCAGT
GCCCCCGGCTCCAGTAGCAGAGGAAGAAGAGGAAGAAGAGACCAAAGCGC
TAGAAGGACCAGCCCCCGAAGCGCCGGTCGAAGAGGAAGAGGGTGATGCG
ACCAACAGCGGCAGCACCGTTCCCGAGAACCACACAACCTCTACCACCAC
TGGCAATAACAAGAAGAAAGCAGAGGTCATTGAAGGCTCTGATGTCAAGG
AGGAACCTACGAACAAGCGTCAAAAGCGCCAGCCGCAGGATAAGGCAGGA
GAAGAAGCAGTCGAAGCAGAGGCTGCAGTCAAAGCGGAAACCAGTACAGC
GCCGCCTACCTCTGCTGGTGAGAAAGGGCAAGAGGCGGAAGAAGATCCGG
AAATATTATTGAAGTCCATCATTGAGAAGCAGTTGGAGCTCCAGGAGGCC
AAGGAGAAGGCGCAGAAGCGCTTGAACGAGCAGGACAACAATGACCAGCC
TCACGGCACAACTATATCCACGAACAGCAGTAGTCGCACCGCCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAGAGTCAA
TTTCCCGCCTCTCGCTCCAGCAAATCGTCCCCTCCGTCCTCCACCACTTC
TTCTCCCTCGGCCGCCGCTGCCGCCACTTCCACTGCCTACTACGCCGCGG
CCGTTAATGCCGCAACCGCGTTTGAAGTGGCGGAGGAGGTGGTTAAGGGT
TTGTTCCAGAATTTTGGCCGGATCCGGTCTTTTTCTCTTCTGCCGGACCC
GCAGCATACGCCCGGGAGGTTGCATCGAGGGTATGGTTTTATAGATTTTG
AGAGTGACGAGGCGGCAGCGGCGGCAATTCAGGCCATGAATGGGTTTGAC
TTGTACGGCAGAAGAATGAAAGTGGGTTGGGCTGCGGCGGGAGGAGGAGG
GGGGGGAGGAGCAGGGATGGCGAGCTATACGTACCCACCACAGTTGGGGA
TGGTGGGAGGTGGATATGGAGGTGGATATGGAGGCGCGCTCGTGCAGCAC
GGGCAGAGTATGTTTGTGCAGCAGCCAGCAGGAGGTGCCTTGCTTTATCA
GCAGCAGCCGCTGCAAATGTACCAACAGCAGCAACCGTACCAACAGCAGC
AGCAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCATCGGCG
TACTATGCGCAGGGCGGGATGTCGTATGGGCCTGGAGGGGTTTGA
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protein sequence of NO09G02450.1

>NO09G02450.1-protein ID=NO09G02450.1-protein|Name=NO09G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MPRAKPTKKAVKAEPPVPPAPVAEEEEEEETKALEGPAPEAPVEEEEGDA
TNSGSTVPENHTTSTTTGNNKKKAEVIEGSDVKEEPTNKRQKRQPQDKAG
EEAVEAEAAVKAETSTAPPTSAGEKGQEAEEDPEILLKSIIEKQLELQEA
KEKAQKRLNEQDNNDQPHGTTISTNSSSRTASSSSSSSSSSSSSSSSQSQ
FPASRSSKSSPPSSTTSSPSAAAAATSTAYYAAAVNAATAFEVAEEVVKG
LFQNFGRIRSFSLLPDPQHTPGRLHRGYGFIDFESDEAAAAAIQAMNGFD
LYGRRMKVGWAAAGGGGGGGAGMASYTYPPQLGMVGGGYGGGYGGALVQH
GQSMFVQQPAGGALLYQQQPLQMYQQQQPYQQQQQQQQQQQQQQQQQPSA
YYAQGGMSYGPGGV*
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mRNA from alignment at chr9:731051..733407-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02450.1 ID=NO09G02450.1|Name=NO09G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2357bp|location=Sequence derived from alignment at chr9:731051..733407- (Nannochloropsis oceanica)
ATGCCGCGCGCGAAACCAACTAAGAAGGCAGTGAAAGCCGAGCCACCAGT
GCCCCCGGCTCCAGTAGCAGAGGAAGAAGAGGAAGAAGAGACCAAAGCGC
TAGAAGGACCAGCCCCCGAAGCGCCGGTCGAAGAGGAAGAGGGTGATGCG
ACCAACAGCGGCAGCACCGTTCCCGAGAACCACACAACCTCTACCACCAC
TGGCAATAACAAGAAGAAAGCAGAGGTCATTGAAGGCTCTGATGTCAAGG
AGGAACCTACGAACAAGCGTCAAAAGCGCCAGCCGCAGGATAAGGCAGGA
GAAGAAGCAGTCGAAGCAGAGGCTGCAGTCAAAGCGGAAACCAGTACAGC
GCCGCCTACCTCTGCTGGTGAGAAAGGGCAAGAGGCGGAAGAAGATCCGG
AAATATTATTGAAGTCCATCATTGAGAAGCAGTTGGAGCTCCAGGAGGCC
AAGGAGAAGGCGCAGAAGCGCTTGAACGAGGTATGTGGTAGGGGTGTGTG
TGGAGGGGTTTGAGATTGCACTTGTCTGTCACTACCGGTTCGGGGAGGGG
GGGAGTGTCTATGATGCTTGTCTGGATCGACCTCCCATTGCATTTCTTTC
ATGTTTTTAAGAATGTTTTGGAGTTTTGCTATCCTTTTGCCTTGTTGGGG
GCATGTTTCCTACATTGCCTCTCTCGGTCCGTCTACCTTCTCTCCTCTCT
TCAGTCGAGTCTTGTGCCTCTCCGCTCTGCTGCTGCCGTCTTCATTTCCT
TCTTCTCCCGTCCCCCTTTCCTGCTTTCTGCCTGTCCTTTGGGAGCTTTT
GGGGCATGCGGCTTTCCTCACCATGAAGCCTCGTCGTTGTCGTATCGATG
TTGGCAGGCGATGTTTAATATTATTGGGCTGCTCAGCAGGACAACAATGA
CCAGCCTCACGGCACAACTATATCCACGAACAGCAGTAGTCGCACCGCCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAG
AGTGTGAGGACTTGTTAAGAAAAGCGACGATGGGGAAGACGTCGAGCCCA
TCCAACTTTGCATGGCAGCAGGAGGAGGAAGAGAGGTCCCGTGCACTGCA
GACACTCTAGGAATCAGCACTTCACCCCATTGCGACACTGACTGCTGCGA
ATTAACACGACAACGACGAGAATAGTCAAGGACACGGGCCGTCGTTCGCC
TTAGCTGTCTCTCGTCTCCCTCTCACCCACCCCTATTCTCTCTTCCCCCC
ACCCTTTTTTCCACTTGTCCCAATCCACAGCAATTTCCCGCCTCTCGCTC
CAGCAAATCGTCCCCTCCGTCCTCCACCACTTCTTCTCCCTCGGCCGCCG
CTGCCGCCACTTCCACTGCCTACTACGCCGCGGCCGTTAATGCCGCAACC
GGTACCGCTGGTGACCCCCCCTTCCCTCTCTCCCTCATACCTCCTCGTCG
AAACAACAATCCCCGGTGGACGATGCGTGTCGTGTGTATGTGGGGAGTTT
GCATTATGATTTGAAGGAGGAGGACGTTAGGAAGGTGTTTGCTCCTTTTG
GGGCGATTCGGAACATCAATATGTCGTTCGAGCCAGCGACAGGAAAGAGT
AAGGGCTTTGCATTTGTGGATTTTGAGCAAGGGGAGAGTGCAACCATGGC
ACTGCAGACGATGAACGGTTTTCAGTTGGCGGGCCGGCCGCTGAAGGTCG
GGAGGCCTGCGCCGGGGGGGGCGGGGGGGGGGTAAAGGGAGGCGGAGCGC
GGCAGCAGGTACAGCAGGGTTATACCGGAGGAGGGAGAGGGGGAGGGGGG
GGGGGGCAAGGGTATATGTGGGGTCAATAGCGTTTGAAGTGGCGGAGGAG
GTGGTTAAGGGTTTGTTCCAGAATTTTGGCCGGATCCGGTCTTTTTCTCT
TCTGCCGGACCCGCAGCATACGCCCGGGAGGTTGCATCGAGGGTATGGTT
TTATAGATTTTGAGAGTGACGAGGCGGCAGCGGCGGCAATTCAGGCCATG
AATGGGTTTGACTTGTACGGCAGAAGAATGAAAGTGGGTTGGGCTGCGGC
GGGAGGAGGAGGGGGGGGAGGAGCAGGGATGGCGAGCTATACGTACCCAC
CACAGTTGGGGATGGTGGGAGGTGGATATGGAGGTGGATATGGAGGCGCG
CTCGTGCAGCACGGGCAGAGTATGTTTGTGCAGCAGCCAGCAGGAGGTGC
CTTGCTTTATCAGCAGCAGCCGCTGCAAATGTACCAACAGCAGCAACCGT
ACCAACAGCAGCAGCAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAG
CAGCCATCGGCGTACTATGCGCAGGGCGGGATGTCGTATGGGCCTGGAGG
GGTTTGA
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Coding sequence (CDS) from alignment at chr9:731051..733407-

>NO09G02450.1 ID=NO09G02450.1|Name=NO09G02450.1|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at chr9:731051..733407- (Nannochloropsis oceanica)
ATGCCGCGCGCGAAACCAACTAAGAAGGCAGTGAAAGCCGAGCCACCAGT
GCCCCCGGCTCCAGTAGCAGAGGAAGAAGAGGAAGAAGAGACCAAAGCGC
TAGAAGGACCAGCCCCCGAAGCGCCGGTCGAAGAGGAAGAGGGTGATGCG
ACCAACAGCGGCAGCACCGTTCCCGAGAACCACACAACCTCTACCACCAC
TGGCAATAACAAGAAGAAAGCAGAGGTCATTGAAGGCTCTGATGTCAAGG
AGGAACCTACGAACAAGCGTCAAAAGCGCCAGCCGCAGGATAAGGCAGGA
GAAGAAGCAGTCGAAGCAGAGGCTGCAGTCAAAGCGGAAACCAGTACAGC
GCCGCCTACCTCTGCTGGTGAGAAAGGGCAAGAGGCGGAAGAAGATCCGG
AAATATTATTGAAGTCCATCATTGAGAAGCAGTTGGAGCTCCAGGAGGCC
AAGGAGAAGGCGCAGAAGCGCTTGAACGAGCAGGACAACAATGACCAGCC
TCACGGCACAACTATATCCACGAACAGCAGTAGTCGCACCGCCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAGAGTCAA
TTTCCCGCCTCTCGCTCCAGCAAATCGTCCCCTCCGTCCTCCACCACTTC
TTCTCCCTCGGCCGCCGCTGCCGCCACTTCCACTGCCTACTACGCCGCGG
CCGTTAATGCCGCAACCGCGTTTGAAGTGGCGGAGGAGGTGGTTAAGGGT
TTGTTCCAGAATTTTGGCCGGATCCGGTCTTTTTCTCTTCTGCCGGACCC
GCAGCATACGCCCGGGAGGTTGCATCGAGGGTATGGTTTTATAGATTTTG
AGAGTGACGAGGCGGCAGCGGCGGCAATTCAGGCCATGAATGGGTTTGAC
TTGTACGGCAGAAGAATGAAAGTGGGTTGGGCTGCGGCGGGAGGAGGAGG
GGGGGGAGGAGCAGGGATGGCGAGCTATACGTACCCACCACAGTTGGGGA
TGGTGGGAGGTGGATATGGAGGTGGATATGGAGGCGCGCTCGTGCAGCAC
GGGCAGAGTATGTTTGTGCAGCAGCCAGCAGGAGGTGCCTTGCTTTATCA
GCAGCAGCCGCTGCAAATGTACCAACAGCAGCAACCGTACCAACAGCAGC
AGCAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCATCGGCG
TACTATGCGCAGGGCGGGATGTCGTATGGGCCTGGAGGGGTTTGA
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Synonyms
Publications