NO09G02400.1, NO09G02400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02400.1
Unique NameNO09G02400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1106
Alignment locationchr9:721675..722780 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:721675..722780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02400.1 vs.
Match: EWM27579.1 (50s ribosomal protein l25 general stress protein ctc [Nannochloropsis gaditana])

HSP 1 Score: 372.5 bits (955), Expect = 1.300e-99
Identity = 200/309 (64.72%), Postives = 232/309 (75.08%), Query Frame = 0 
Query:    6 SSLVRRLGVSL--TSTPSSTVTASNRRAITIVTAARRPPHQSQASPPPPSANPLLSTRCLITGSSRSGSSAADSNEGASKK---YVSPHNWMALVRDYGKSDAVVGDAPMEIQTIQATARTPQETGSRYSQRAREKGHLPGVLYGPGVDGDKERHLITVERREIEKQMRRLGDSIASTVFDLQLGQYKQRVLIRDLDRDPGTALPIAVNFLRYRPGYPVEVPVCFVNEDLCLPLKRGGMLLSINRFIRVSCEGETLPEMLMVDMTGVRNNQKVGLERVHFPSNVQPYEVSESFVLGVVKGKNVAGTPGG 310
            + +VRRLGV+L  +ST       +  +    V A  RPP + QAS          +T   I  SS   +    S  G S K     S H+W ALVRDYGKSDAV    PME+ TI+AT R   +TGSRYS+R RE+G LPGVLYGPGVDGDKER+LITV+RR+IE+ MRRLGDSIASTVFDLQLG YKQRVLIRDLDRDPGTA+PIAVNFLRYRPGYPV+VPVCF+NE+LCLPLKRGGMLLSINRFIRVSCEGETLPEML+VD+TG ++ QK+GLERV FP +VQP+EV E FVLGVVKGKN+  +  G
Sbjct:    5 TDMVRRLGVALAGSSTNICKRAVNGGKGAMSVVARVRPPPRRQASLQSLQLLSHSTTFRAIASSSVCSAVGGGSEGGVSHKTDKVSSSHDWAALVRDYGKSDAVSSSIPMEVPTIEATVRCLDDTGSRYSRRLREEGKLPGVLYGPGVDGDKERYLITVKRRDIERHMRRLGDSIASTVFDLQLGDYKQRVLIRDLDRDPGTAMPIAVNFLRYRPGYPVKVPVCFINEELCLPLKRGGMLLSINRFIRVSCEGETLPEMLLVDLTGAKSGQKIGLERVTFPPSVQPHEVQEDFVLGVVKGKNIVTSEVG 313
The following BLAST results are available for this feature:
BLAST of NO09G02400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27579.11.300e-9964.7250s ribosomal protein l25 general stress protein c... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02400NO09G02400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02400.1NO09G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02400.1.cds1NO09G02400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02400.1 ID=NO09G02400.1|Name=NO09G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1106bp
CAGGCCCTCCATCGCTGCAAGCATCATCAGCAGCTGTGCAAGCAGCAGAA
TGAGTCGCACAGGCAGCAGTTTGGTGCGGCGCCTGGGAGTTTCTCTGACC
AGCACCCCGTCCTCCACCGTTACCGCCAGCAACAGACGCGCTATCACTAT
TGTCACTGCCGCCCGACGGCCGCCCCATCAATCACAGGCGTCGCCACCAC
CACCATCCGCCAACCCCCTCCTCTCGACGCGCTGCCTCATCACCGGCAGC
AGCCGCAGCGGCAGCAGTGCCGCGGACAGCAACGAAGGCGCCTCCAAGAA
GTATGTTTCTCCGCACAATTGGATGGCGTTGGTGCGGGACTACGGCAAGT
CGGATGCGGTGGTTGGCGATGCACCCATGGAGATCCAGACTATCCAAGCT
ACGGCCCGCACACCCCAGGAGACGGGTTCCCGCTACAGCCAACGGGCACG
GGAAAAAGGCCATCTGCCCGGTGTCCTCTACGGACCTGGAGTGGACGGGG
ACAAAGAGCGCCACCTCATTACGGTGGAACGTCGGGAGATTGAAAAACAG
ATGCGGCGGTTGGGGGATTCTATCGCGAGTACGGTATTTGATTTGCAGTT
GGGGCAGTACAAGCAACGGGTTCTCATCCGAGACTTAGACCGGGACCCCG
GGACGGCATTGCCGATTGCTGTAAATTTTTTGCGGTATCGCCCGGGATAC
CCCGTCGAGGTGCCTGTGTGTTTTGTGAATGAAGATTTGTGCTTGCCTTT
AAAACGGGGGGGCATGCTCCTGAGCATTAATCGTTTTATCCGCGTATCGT
GCGAGGGCGAGACTTTGCCGGAAATGTTGATGGTGGATATGACGGGGGTG
AGGAACAATCAGAAGGTTGGATTAGAGCGTGTGCACTTCCCGTCGAACGT
GCAACCGTACGAGGTGAGCGAGAGTTTTGTCTTGGGGGTGGTGAAGGGCA
AAAACGTGGCGGGCACGCCTGGCGGGCCTGACTCGGTGGCGGATGAGGTG
GCAGCAACAGCGTAGAGGGTTTGAGACCATTAAGAGAGAATGAGAAAGAA
AGGAAGCAAAAGTGAGTGAACGGGATGTGGGGAGAGTAAATCTTCGCTAA
AGAAGT
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protein sequence of NO09G02400.1

>NO09G02400.1-protein ID=NO09G02400.1-protein|Name=NO09G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MSRTGSSLVRRLGVSLTSTPSSTVTASNRRAITIVTAARRPPHQSQASPP
PPSANPLLSTRCLITGSSRSGSSAADSNEGASKKYVSPHNWMALVRDYGK
SDAVVGDAPMEIQTIQATARTPQETGSRYSQRAREKGHLPGVLYGPGVDG
DKERHLITVERREIEKQMRRLGDSIASTVFDLQLGQYKQRVLIRDLDRDP
GTALPIAVNFLRYRPGYPVEVPVCFVNEDLCLPLKRGGMLLSINRFIRVS
CEGETLPEMLMVDMTGVRNNQKVGLERVHFPSNVQPYEVSESFVLGVVKG
KNVAGTPGGPDSVADEVAATA*
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mRNA from alignment at chr9:721675..722780-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02400.1 ID=NO09G02400.1|Name=NO09G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1106bp|location=Sequence derived from alignment at chr9:721675..722780- (Nannochloropsis oceanica)
CAGGCCCTCCATCGCTGCAAGCATCATCAGCAGCTGTGCAAGCAGCAGAA
TGAGTCGCACAGGCAGCAGTTTGGTGCGGCGCCTGGGAGTTTCTCTGACC
AGCACCCCGTCCTCCACCGTTACCGCCAGCAACAGACGCGCTATCACTAT
TGTCACTGCCGCCCGACGGCCGCCCCATCAATCACAGGCGTCGCCACCAC
CACCATCCGCCAACCCCCTCCTCTCGACGCGCTGCCTCATCACCGGCAGC
AGCCGCAGCGGCAGCAGTGCCGCGGACAGCAACGAAGGCGCCTCCAAGAA
GTATGTTTCTCCGCACAATTGGATGGCGTTGGTGCGGGACTACGGCAAGT
CGGATGCGGTGGTTGGCGATGCACCCATGGAGATCCAGACTATCCAAGCT
ACGGCCCGCACACCCCAGGAGACGGGTTCCCGCTACAGCCAACGGGCACG
GGAAAAAGGCCATCTGCCCGGTGTCCTCTACGGACCTGGAGTGGACGGGG
ACAAAGAGCGCCACCTCATTACGGTGGAACGTCGGGAGATTGAAAAACAG
ATGCGGCGGTTGGGGGATTCTATCGCGAGTACGGTATTTGATTTGCAGTT
GGGGCAGTACAAGCAACGGGTTCTCATCCGAGACTTAGACCGGGACCCCG
GGACGGCATTGCCGATTGCTGTAAATTTTTTGCGGTATCGCCCGGGATAC
CCCGTCGAGGTGCCTGTGTGTTTTGTGAATGAAGATTTGTGCTTGCCTTT
AAAACGGGGGGGCATGCTCCTGAGCATTAATCGTTTTATCCGCGTATCGT
GCGAGGGCGAGACTTTGCCGGAAATGTTGATGGTGGATATGACGGGGGTG
AGGAACAATCAGAAGGTTGGATTAGAGCGTGTGCACTTCCCGTCGAACGT
GCAACCGTACGAGGTGAGCGAGAGTTTTGTCTTGGGGGTGGTGAAGGGCA
AAAACGTGGCGGGCACGCCTGGCGGGCCTGACTCGGTGGCGGATGAGGTG
GCAGCAACAGCGTAGAGGGTTTGAGACCATTAAGAGAGAATGAGAAAGAA
AGGAAGCAAAAGTGAGTGAACGGGATGTGGGGAGAGTAAATCTTCGCTAA
AGAAGT
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Coding sequence (CDS) from alignment at chr9:721675..722780-

>NO09G02400.1 ID=NO09G02400.1|Name=NO09G02400.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr9:721675..722780- (Nannochloropsis oceanica)
ATGAGTCGCACAGGCAGCAGTTTGGTGCGGCGCCTGGGAGTTTCTCTGAC
CAGCACCCCGTCCTCCACCGTTACCGCCAGCAACAGACGCGCTATCACTA
TTGTCACTGCCGCCCGACGGCCGCCCCATCAATCACAGGCGTCGCCACCA
CCACCATCCGCCAACCCCCTCCTCTCGACGCGCTGCCTCATCACCGGCAG
CAGCCGCAGCGGCAGCAGTGCCGCGGACAGCAACGAAGGCGCCTCCAAGA
AGTATGTTTCTCCGCACAATTGGATGGCGTTGGTGCGGGACTACGGCAAG
TCGGATGCGGTGGTTGGCGATGCACCCATGGAGATCCAGACTATCCAAGC
TACGGCCCGCACACCCCAGGAGACGGGTTCCCGCTACAGCCAACGGGCAC
GGGAAAAAGGCCATCTGCCCGGTGTCCTCTACGGACCTGGAGTGGACGGG
GACAAAGAGCGCCACCTCATTACGGTGGAACGTCGGGAGATTGAAAAACA
GATGCGGCGGTTGGGGGATTCTATCGCGAGTACGGTATTTGATTTGCAGT
TGGGGCAGTACAAGCAACGGGTTCTCATCCGAGACTTAGACCGGGACCCC
GGGACGGCATTGCCGATTGCTGTAAATTTTTTGCGGTATCGCCCGGGATA
CCCCGTCGAGGTGCCTGTGTGTTTTGTGAATGAAGATTTGTGCTTGCCTT
TAAAACGGGGGGGCATGCTCCTGAGCATTAATCGTTTTATCCGCGTATCG
TGCGAGGGCGAGACTTTGCCGGAAATGTTGATGGTGGATATGACGGGGGT
GAGGAACAATCAGAAGGTTGGATTAGAGCGTGTGCACTTCCCGTCGAACG
TGCAACCGTACGAGGTGAGCGAGAGTTTTGTCTTGGGGGTGGTGAAGGGC
AAAAACGTGGCGGGCACGCCTGGCGGGCCTGACTCGGTGGCGGATGAGGT
GGCAGCAACAGCGTAG
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Synonyms
Publications