NO09G02380.1, NO09G02380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02380.1
Unique NameNO09G02380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1539
Alignment locationchr9:715381..717074 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:715381..717074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02380.1 vs.
Match: EWM27590.1 (metallo-beta-lactamase [Nannochloropsis gaditana])

HSP 1 Score: 510.0 bits (1312), Expect = 8.600e-141
Identity = 297/530 (56.04%), Postives = 362/530 (68.30%), Query Frame = 0 
Query:    6 CGCTTDATDAGID--FSLNGNDAPRTIATSLRPPPQPTSSSPSQAPGSIPNPVHRTDSTTSTSSITSNGGPAAAGFEVSSAWSVAGVGTCIQLRHRAFGLHIAMDLGTSAWEALRANHVFVSHSHIDHIGALLNHARARTLSNKPAKYYVPLSAVEPLLQAKAAYEVLDGHAFQADITGVKPGDVIRIHPNVKARVFLTKHRVPSQGYALIREKSKGLKAEFRHLSSRELAFRRKGGEEVTETEEIVEVAYTGDTMLDAILAEPLVTQARLLIVECTYLEGEIIWAHKWCHVHIHELIQHLDTFAQNERILLCHVSRKYKLWENVLRLVRAAIVVAPELAAKTGVTLAGFGRPEPVTWLSELEEAES-------------GGGGGMEEATEGVREGELVGNLPQRSAGGRGRVPPMRVAATVALAAG--KWVGADGVMEEELPEVKTREEANRMLRVMSEDLGLRPRAGSFV----KGPGED--EGERREGEVEGRGRGSRDEAGLITKTTTTTTTEEEEGGAEEASLLF 513
            C C  D  ++      S   N AP     +  PP  P  +  S +  + P P  R DS  S S  TSN  PA AGFEVSSAWSVAG+GTCIQLRHRAFGLHIAMD+GTSA E L A H+FVSH HIDHIGALLNHARARTLSNKPAKYYVP+ A EPLL+AKAAYE LDG AF A+I GV+PGD+ RIHPNV+  VF TKHRVPSQGYA+IREKSKGLKA  R+LSS ELA RRK GE V E E+IVEVAYTGDT+L A+L +PLV QARLLI+ECTYLEGEI+WAH W HVH+ E+++H   FA NER++ CHVSRKYK W+NVLR  ++ +   P LAAK GVTLAGFGR EPVTWL + ++ ++             GG G      EG   G   GN+  R   G   +  + V +  A  A   +W+G++G +++ELPEVKT+EEANRMLRV+SEDLGL+PRA S +    +G  E+  +GE+++ E++G  R S  +   +       T+EE E   EE+SL F
Sbjct:    7 CACVADVEESSNHRAASREKNSAP----IAALPPTLPEQAQASTSTSARP-PFKRADSVDSPSVATSN--PADAGFEVSSAWSVAGIGTCIQLRHRAFGLHIAMDIGTSAGETLGAGHIFVSHGHIDHIGALLNHARARTLSNKPAKYYVPVPATEPLLRAKAAYEALDGCAFNAEIVGVEPGDICRIHPNVRVEVFPTKHRVPSQGYAIIREKSKGLKAGCRNLSSHELARRRKQGESVVEIEDIVEVAYTGDTILKAVLDQPLVRQARLLILECTYLEGEIVWAHSWQHVHMQEIVKHAAAFASNERVVCCHVSRKYKRWDNVLRCFQSGMAPVPALAAKIGVTLAGFGRAEPVTWLVDYQKEQAAAAMAAAAAAAGEGGSGSPVGHAEGPHRGPSGGNVRPRREKGGADLEDIGVQSVDATPAEETRWMGSNGGLKDELPEVKTKEEANRMLRVLSEDLGLQPRAESLLNCSEEGHEEEQGQGEKQQQELKGEKRESVGKGWEV-------TSEERE---EESSLFF 519
The following BLAST results are available for this feature:
BLAST of NO09G02380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27590.18.600e-14156.04metallo-beta-lactamase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02380NO09G02380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02380.1NO09G02380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02380.1.cds1NO09G02380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02380.1.cds2NO09G02380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02380.1 ID=NO09G02380.1|Name=NO09G02380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1539bp
ATGGATGAGCCACTCTGTGGCTGCACTACAGACGCCACCGACGCCGGCAT
CGACTTCAGCCTGAATGGGAATGATGCGCCTCGGACAATCGCAACGTCCT
TGCGCCCTCCCCCTCAACCCACATCCTCCTCCCCATCACAAGCGCCAGGC
TCCATCCCTAACCCTGTCCACCGTACCGACTCGACAACCTCAACATCATC
CATCACCAGCAATGGCGGCCCCGCAGCTGCTGGCTTTGAGGTCTCATCTG
CGTGGTCTGTCGCAGGGGTGGGCACGTGCATCCAGCTCCGCCACCGCGCC
TTTGGCTTGCACATAGCTATGGACTTGGGCACCAGCGCGTGGGAAGCCTT
GAGGGCCAATCATGTGTTTGTCTCGCATTCGCACATTGATCATATTGGTG
CTTTGTTGAACCACGCTCGTGCTCGGACCTTGAGCAATAAACCAGCCAAA
TATTACGTTCCTCTCTCGGCGGTGGAGCCCTTGCTGCAAGCCAAAGCCGC
ATATGAAGTGCTGGACGGCCATGCCTTCCAAGCAGACATTACGGGGGTCA
AGCCCGGAGATGTTATACGCATCCATCCCAACGTCAAAGCAAGAGTGTTT
CTAACGAAGCATAGAGTGCCTAGTCAGGGGTATGCATTAATTCGGGAGAA
AAGCAAGGGCCTGAAGGCTGAATTTCGGCACTTGTCGTCGCGGGAGTTGG
CGTTTCGGAGGAAAGGGGGGGAGGAGGTGACAGAAACCGAGGAGATTGTC
GAAGTTGCTTACACAGGAGACACTATGTTAGACGCGATTTTGGCTGAACC
GCTGGTGACGCAGGCCAGGTTGTTGATCGTCGAGTGCACTTACCTTGAAG
GTGAAATTATCTGGGCTCACAAATGGTGCCATGTCCACATCCACGAGCTC
ATCCAGCACCTGGACACCTTCGCGCAAAACGAGCGCATCCTCCTTTGCCA
CGTCTCGAGGAAATACAAGCTATGGGAAAATGTCCTCCGTCTCGTCCGCG
CGGCCATCGTGGTCGCTCCCGAGCTGGCAGCGAAGACAGGAGTCACTCTA
GCAGGGTTTGGGAGACCCGAGCCTGTTACCTGGTTGTCAGAGTTGGAGGA
AGCAGAGAGCGGAGGGGGAGGAGGGATGGAGGAGGCGACTGAGGGCGTGA
GGGAGGGGGAGTTGGTGGGAAATCTACCACAGCGGTCTGCAGGAGGGAGA
GGGCGTGTGCCTCCGATGAGGGTAGCGGCGACAGTGGCGTTGGCGGCCGG
AAAGTGGGTGGGAGCGGACGGGGTGATGGAGGAGGAGCTGCCGGAGGTGA
AGACGAGAGAGGAAGCGAATCGAATGCTTAGGGTAATGTCGGAGGACTTG
GGGTTGAGGCCTCGAGCGGGTTCCTTTGTGAAGGGGCCGGGGGAGGACGA
GGGAGAGAGGAGGGAAGGTGAGGTTGAGGGGAGGGGGAGAGGGAGTCGGG
ATGAAGCGGGGTTGATTACGAAAACGACGACGACGACGACGACTGAGGAG
GAGGAGGGGGGGGCGGAGGAGGCTTCTTTGTTGTTTTAG
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protein sequence of NO09G02380.1

>NO09G02380.1-protein ID=NO09G02380.1-protein|Name=NO09G02380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MDEPLCGCTTDATDAGIDFSLNGNDAPRTIATSLRPPPQPTSSSPSQAPG
SIPNPVHRTDSTTSTSSITSNGGPAAAGFEVSSAWSVAGVGTCIQLRHRA
FGLHIAMDLGTSAWEALRANHVFVSHSHIDHIGALLNHARARTLSNKPAK
YYVPLSAVEPLLQAKAAYEVLDGHAFQADITGVKPGDVIRIHPNVKARVF
LTKHRVPSQGYALIREKSKGLKAEFRHLSSRELAFRRKGGEEVTETEEIV
EVAYTGDTMLDAILAEPLVTQARLLIVECTYLEGEIIWAHKWCHVHIHEL
IQHLDTFAQNERILLCHVSRKYKLWENVLRLVRAAIVVAPELAAKTGVTL
AGFGRPEPVTWLSELEEAESGGGGGMEEATEGVREGELVGNLPQRSAGGR
GRVPPMRVAATVALAAGKWVGADGVMEEELPEVKTREEANRMLRVMSEDL
GLRPRAGSFVKGPGEDEGERREGEVEGRGRGSRDEAGLITKTTTTTTTEE
EEGGAEEASLLF*
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mRNA from alignment at chr9:715381..717074+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02380.1 ID=NO09G02380.1|Name=NO09G02380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1694bp|location=Sequence derived from alignment at chr9:715381..717074+ (Nannochloropsis oceanica)
ATGGATGAGCCACTCTGTGGCTGCACTACAGACGCCACCGACGCCGGCAT
CGACTTCAGCCTGAATGGGAATGATGCGCCTCGGACAATCGCAACGTCCT
TGCGCCCTCCCCCTCAACCCACATCCTCCTCCCCATCACAAGCGCCAGGC
TCCATCCCTAACCCTGTCCACCGTACCGACTCGACAACCTCAACATCATC
CATCACCAGCAATGGCGGCCCCGCAGCTGCTGGCTTTGAGGTCTCATCTG
CGTGGTCTGTCGCAGGGGTGGGCACGTGCATCCAGCTCCGCCACCGCGCC
TTTGGCTTGCACATAGCTATGGACTTGGGCACCAGCGCGTGGGAAGCCTT
GAGGGCCAATCATGTGTTTGTCTCGCATTCGCACATTGATCATATTGGTG
CTTTGTTGAACCACGCTCGTGCTCGGACCTTGAGCAATAAACCAGCCAAA
TATTACGTTCCTCTCTCGGCGGTGGAGCCCTTGCTGCAAGCCAAAGCCGC
ATATGAAGTGCTGGACGGCCATGCCTTCCAAGCAGACATTACGGGGGTCA
AGCCCGGAGATGTTATACGCATCCATCCCAACGTCAAAGCAAGAGTGTTT
CTAACGAAGCATAGAGTGCCTAGTCAGGGGTATGCATTAATTCGGGAGAA
AAGCAAGGGCCTGAAGGCTGAATTTCGGCACTTGTCGTCGCGGGAGTTGG
CGTTTCGGAGGAAAGGGGGGGAGGAGGTGACAGAAACCGAGGAGATTGTC
GAAGTTGCTTACACAGGAGACACTATGTTAGACGCGATTTTGGCTGAACC
GCTGGTGACGCAGGCCAGGTTGTTGATCGTCGAGTGCACTTACCTTGAAG
GTGAAGGAGGGAGGGAGCGAGGAGACGATAGGGGAGACGAGGGGAAACGG
GAGAAAGAGGCTTTGCGAAGAACGGGACCACCTTACTCTTCAGCTATTTA
GGTGAGGTAGTTTTCTACAATCACGCACTCAAGCACAGCCTTTTCAAATA
CACAGGTGAAATTATCTGGGCTCACAAATGGTGCCATGTCCACATCCACG
AGCTCATCCAGCACCTGGACACCTTCGCGCAAAACGAGCGCATCCTCCTT
TGCCACGTCTCGAGGAAATACAAGCTATGGGAAAATGTCCTCCGTCTCGT
CCGCGCGGCCATCGTGGTCGCTCCCGAGCTGGCAGCGAAGACAGGAGTCA
CTCTAGCAGGGTTTGGGAGACCCGAGCCTGTTACCTGGTTGTCAGAGTTG
GAGGAAGCAGAGAGCGGAGGGGGAGGAGGGATGGAGGAGGCGACTGAGGG
CGTGAGGGAGGGGGAGTTGGTGGGAAATCTACCACAGCGGTCTGCAGGAG
GGAGAGGGCGTGTGCCTCCGATGAGGGTAGCGGCGACAGTGGCGTTGGCG
GCCGGAAAGTGGGTGGGAGCGGACGGGGTGATGGAGGAGGAGCTGCCGGA
GGTGAAGACGAGAGAGGAAGCGAATCGAATGCTTAGGGTAATGTCGGAGG
ACTTGGGGTTGAGGCCTCGAGCGGGTTCCTTTGTGAAGGGGCCGGGGGAG
GACGAGGGAGAGAGGAGGGAAGGTGAGGTTGAGGGGAGGGGGAGAGGGAG
TCGGGATGAAGCGGGGTTGATTACGAAAACGACGACGACGACGACGACTG
AGGAGGAGGAGGGGGGGGCGGAGGAGGCTTCTTTGTTGTTTTAG
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Coding sequence (CDS) from alignment at chr9:715381..717074+

>NO09G02380.1 ID=NO09G02380.1|Name=NO09G02380.1|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at chr9:715381..717074+ (Nannochloropsis oceanica)
ATGGATGAGCCACTCTGTGGCTGCACTACAGACGCCACCGACGCCGGCAT
CGACTTCAGCCTGAATGGGAATGATGCGCCTCGGACAATCGCAACGTCCT
TGCGCCCTCCCCCTCAACCCACATCCTCCTCCCCATCACAAGCGCCAGGC
TCCATCCCTAACCCTGTCCACCGTACCGACTCGACAACCTCAACATCATC
CATCACCAGCAATGGCGGCCCCGCAGCTGCTGGCTTTGAGGTCTCATCTG
CGTGGTCTGTCGCAGGGGTGGGCACGTGCATCCAGCTCCGCCACCGCGCC
TTTGGCTTGCACATAGCTATGGACTTGGGCACCAGCGCGTGGGAAGCCTT
GAGGGCCAATCATGTGTTTGTCTCGCATTCGCACATTGATCATATTGGTG
CTTTGTTGAACCACGCTCGTGCTCGGACCTTGAGCAATAAACCAGCCAAA
TATTACGTTCCTCTCTCGGCGGTGGAGCCCTTGCTGCAAGCCAAAGCCGC
ATATGAAGTGCTGGACGGCCATGCCTTCCAAGCAGACATTACGGGGGTCA
AGCCCGGAGATGTTATACGCATCCATCCCAACGTCAAAGCAAGAGTGTTT
CTAACGAAGCATAGAGTGCCTAGTCAGGGGTATGCATTAATTCGGGAGAA
AAGCAAGGGCCTGAAGGCTGAATTTCGGCACTTGTCGTCGCGGGAGTTGG
CGTTTCGGAGGAAAGGGGGGGAGGAGGTGACAGAAACCGAGGAGATTGTC
GAAGTTGCTTACACAGGAGACACTATGTTAGACGCGATTTTGGCTGAACC
GCTGGTGACGCAGGCCAGGTTGTTGATCGTCGAGTGCACTTACCTTGAAG
GTGAAATTATCTGGGCTCACAAATGGTGCCATGTCCACATCCACGAGCTC
ATCCAGCACCTGGACACCTTCGCGCAAAACGAGCGCATCCTCCTTTGCCA
CGTCTCGAGGAAATACAAGCTATGGGAAAATGTCCTCCGTCTCGTCCGCG
CGGCCATCGTGGTCGCTCCCGAGCTGGCAGCGAAGACAGGAGTCACTCTA
GCAGGGTTTGGGAGACCCGAGCCTGTTACCTGGTTGTCAGAGTTGGAGGA
AGCAGAGAGCGGAGGGGGAGGAGGGATGGAGGAGGCGACTGAGGGCGTGA
GGGAGGGGGAGTTGGTGGGAAATCTACCACAGCGGTCTGCAGGAGGGAGA
GGGCGTGTGCCTCCGATGAGGGTAGCGGCGACAGTGGCGTTGGCGGCCGG
AAAGTGGGTGGGAGCGGACGGGGTGATGGAGGAGGAGCTGCCGGAGGTGA
AGACGAGAGAGGAAGCGAATCGAATGCTTAGGGTAATGTCGGAGGACTTG
GGGTTGAGGCCTCGAGCGGGTTCCTTTGTGAAGGGGCCGGGGGAGGACGA
GGGAGAGAGGAGGGAAGGTGAGGTTGAGGGGAGGGGGAGAGGGAGTCGGG
ATGAAGCGGGGTTGATTACGAAAACGACGACGACGACGACGACTGAGGAG
GAGGAGGGGGGGGCGGAGGAGGCTTCTTTGTTGTTTTAG
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Synonyms
Publications