NO09G02350.1, NO09G02350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02350.1
Unique NameNO09G02350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1649
Alignment locationchr9:707249..709288 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:707249..709288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02350.1 vs.
Match: XP_012203729.1 (hypothetical protein SPRG_08736 [Saprolegnia parasitica CBS 223.65]; KDO25546.1 hypothetical protein SPRG_08736 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 463.8 bits (1192), Expect = 4.700e-127
Identity = 230/319 (72.10%), Postives = 266/319 (83.39%), Query Frame = 0 
Query:   21 RLDLSQPRWDQSTFEGRARHFFTTTNPLNGLASDAELDHAKALLEQYKAGKEPAGTTDEQIWEAKHLYDSAFHPETGEKLFLPGRMSFQVPGNMVITGCMMQFYRSIPAVVFWQWVNQSFNAVVNYSNRNASAGVTTEQLGQAYVAATAASVATAVGFNRLIARNPKLSQGMIGRFVPLLAVAAANCVNIPLMRQRELVEGIDLKTREGVVVGKSKEAAKTAVAQVVPSRILMATPGMLFPPLIMANLENTALLRATPGLGAPIMVAMTGLCLSFSTPLCCALFPQEATIKLSQVEPELQENAKKMTPVPEVFFYNKGL 340
            RL+L +PRWDQSTFEGRA+HF TTTNPLN LASDA+LD AKAL+EQYKAG+EPAG  DE +W AKHLYDSAFHP+TGEK F+ GRM+FQVPGNM ITGCMM FYRS PAV+FWQ++NQ+FN++VNY+NRNAS GVTTEQLGQAY+AA+  SVATAVG N+ IA  P LS G+IGRFVPL+AVAAAN VNIPLMRQRELV+GID++T EG ++GKSK AA+ AV QVVPSRILMA PGMLFPPL+MA LE   LL+ +P L APIMV +TGLCLSFSTPLCCALFPQ++ +  S +EPELQ       P     FYNKGL
Sbjct:    4 RLNLDEPRWDQSTFEGRAKHFLTTTNPLNVLASDADLDAAKALVEQYKAGREPAGIKDEDVWAAKHLYDSAFHPDTGEKNFILGRMAFQVPGNMAITGCMMTFYRSTPAVIFWQFMNQTFNSIVNYTNRNASTGVTTEQLGQAYIAASTMSVATAVGMNKFIASRPSLSGGLIGRFVPLMAVAAANWVNIPLMRQRELVDGIDVETAEGELIGKSKVAAQNAVLQVVPSRILMAVPGMLFPPLVMAKLEQGTLLKRSPMLAAPIMVLLTGLCLSFSTPLCCALFPQKSAVAKSDLEPELQAIIDAKYPRTAHAFYNKGL 322
The following BLAST results are available for this feature:
BLAST of NO09G02350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_012203729.14.700e-12772.10hypothetical protein SPRG_08736 [Saprolegnia paras... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02350NO09G02350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02350.1NO09G02350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02350.1.cds1NO09G02350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02350.1.cds2NO09G02350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02350.1 ID=NO09G02350.1|Name=NO09G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1649bp
CTCCTTTCACTTGCACTACTGCAGCTTGTGTGCGGGTAAGACGATTGCCC
TCTTACTTCCTTGTGACCCTTGTCGTTCGCGGGGGACATACTTACCGTCG
AGAACGAAGGGCGTGGACAAGCTTCACATAATCAGCTCCATACATCATCA
TGATCCATCACACGCCAAGAGGCCAACGCCAAGCGATGGATACTCACCAC
TTTACTGCTCATGCAACGACATACAGACAAAGCCCCCGGTGGATTTCGTC
GCAGCCTCCACCATGTTTGGCTGGGGCAAGAAGAAGGTCCAGGCGCCAGA
GCCGGAGAAGCCAGTGGTGCCCCGCCTCGACTTGAGCCAGCCCCGCTGGG
ACCAAAGCACCTTTGAAGGCCGCGCCCGTCACTTTTTCACCACGACCAAC
CCGCTTAATGGCCTAGCCTCGGATGCCGAGTTGGACCACGCCAAGGCCTT
GTTGGAGCAATATAAAGCGGGAAAGGAACCGGCGGGGACGACGGACGAAC
AAATCTGGGAAGCGAAGCATTTATATGACTCAGCATTCCACCCTGAAACG
GGGGAGAAGCTTTTCTTACCGGGTCGTATGTCATTTCAGGTGCCGGGTAA
TATGGTAATTACTGGGTGTATGATGCAATTTTACCGGTCTATTCCGGCAG
TGGTGTTTTGGCAATGGGTCAACCAGAGCTTTAATGCCGTCGTGAATTAT
TCGAATCGCAATGCTTCTGCGGGCGTGACCACGGAGCAGCTAGGACAGGC
TTATGTTGCGGCAACGGCTGCTTCGGTTGCCACAGCGGTGGGATTTAATC
GATTAATTGCGCGAAACCCCAAATTGAGCCAAGGGATGATTGGACGGTTT
GTGCCTTTGCTGGCGGTGGCGGCCGCCAACTGTGTGAATATTCCGCTGAT
GCGACAGAGAGAACTGGTAGAGGGTATTGACCTCAAAACGAGGGAGGGGG
TGGTGGTGGGGAAGAGCAAAGAGGCGGCCAAGACGGCGGTGGCGCAGGTG
GTGCCCTCTCGTATTCTGATGGCGACACCCGGCATGTTGTTCCCTCCGCT
GATCATGGCAAATCTGGAAAACACCGCGCTATTGCGGGCCACACCTGGCC
TTGGGGCCCCCATCATGGTGGCGATGACGGGGCTGTGTTTATCATTTTCG
ACCCCCTTGTGTTGTGCGTTGTTCCCGCAGGAGGCCACGATTAAATTGAG
TCAGGTGGAACCGGAGCTACAAGAGAACGCGAAAAAGATGACACCCGTGC
CGGAGGTATTCTTCTATAATAAGGGGCTTTAGATGACAGGTGAATAGTTG
ATGAGGTGGGAAATTGAGAAAAGAAAAGGAATGGGGGGACGAAGGACACT
GTACGATGATATTTGAGATATTTTGGTGATGCAAGTCTTGGTAAGAGGAG
AAGCAATGAGAACTTGTGGGCCTTTGGGGGGAAAGGCGGGAGGGAAAGGG
GCGTGCGCGGGAGGCTGCATGTCTCACACATTCTTCAGCCGTGCATTGAT
GATTGTGGAAGGAAGAGGGCGCGAGAGACGACTAAAGGCTTGCGCAGGAA
GGCAGCGCGAGAGGGAGAGGCAAGGAGAGGAAAATTCATGAATGCCACCG
AAAAACAAAATCAGAATAAAAAAGAAGGTAAAAAAGAACATCAAAAGGT
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protein sequence of NO09G02350.1

>NO09G02350.1-protein ID=NO09G02350.1-protein|Name=NO09G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MFGWGKKKVQAPEPEKPVVPRLDLSQPRWDQSTFEGRARHFFTTTNPLNG
LASDAELDHAKALLEQYKAGKEPAGTTDEQIWEAKHLYDSAFHPETGEKL
FLPGRMSFQVPGNMVITGCMMQFYRSIPAVVFWQWVNQSFNAVVNYSNRN
ASAGVTTEQLGQAYVAATAASVATAVGFNRLIARNPKLSQGMIGRFVPLL
AVAAANCVNIPLMRQRELVEGIDLKTREGVVVGKSKEAAKTAVAQVVPSR
ILMATPGMLFPPLIMANLENTALLRATPGLGAPIMVAMTGLCLSFSTPLC
CALFPQEATIKLSQVEPELQENAKKMTPVPEVFFYNKGL*
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mRNA from alignment at chr9:707249..709288+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02350.1 ID=NO09G02350.1|Name=NO09G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2040bp|location=Sequence derived from alignment at chr9:707249..709288+ (Nannochloropsis oceanica)
CTCCTTTCACTTGCACTACTGCAGCTTGTGTGCGGGTAAGACGATTGCCC
TCTTACTTCCTTGTGACCCTTGTCGTTCGCGGGGGACATACTTACCGTCG
AGAACGAAGGGCGTGGACAAGCTTCACATAATCAGCTCCATACATCATCA
TGATCCATCACACGCCAAGAGGCCAACGCCAAGCGATGGATACTCACCAC
TTTACTGCTCATGCAACGACATACAGACAAAGCCCCCGGTGGATTTCGTC
GCAGCCTCCACCATGTTTGGCTGGGGCAAGAAGAAGGTCCAGGCGCCAGA
GCCGGAGAAGCCAGTGGTGCCCCGCCTCGACTTGAGCCAGGTAATTTGCA
TGGAAGAGAGGAGAGCTAGCACAAGGGGGAGGGTTTAAACGCAAGGACGG
GAAGAGTAGAAATCGGAAAGGCTTGCTGCACTATGTAGCAGGGTATGTCC
TTGTACATCCTTTTCGTGCCCGGAATGAGGCATGATTTATGGTTCGTCAG
GCATTGGGGAGGCACGGAGGGAGGAAAGAATGTCATTTTCCCCGCCTTCT
CTGCTACTCTTACACAGCTAACGATTTTCCGTGGAAAGATTGGTAATAAT
CTCTTATTACCTATCGAGACGAAGAGGGTGCACTCCTTTTTCAAACTTCG
TTTCCTACGTTCTGTATAAGCAACACACAACCACCACCTCACATTTCCCT
TCCCCCCCCAAAATTTTCCTCAACCCAACAGCCCCGCTGGGACCAAAGCA
CCTTTGAAGGCCGCGCCCGTCACTTTTTCACCACGACCAACCCGCTTAAT
GGCCTAGCCTCGGATGCCGAGTTGGACCACGCCAAGGCCTTGTTGGAGCA
ATATAAAGCGGGAAAGGAACCGGCGGGGACGACGGACGAACAAATCTGGG
AAGCGAAGCATTTATATGACTCAGCATTCCACCCTGAAACGGGGGAGAAG
CTTTTCTTACCGGGTCGTATGTCATTTCAGGTGCCGGGTAATATGGTAAT
TACTGGGTGTATGATGCAATTTTACCGGTCTATTCCGGCAGTGGTGTTTT
GGCAATGGGTCAACCAGAGCTTTAATGCCGTCGTGAATTATTCGAATCGC
AATGCTTCTGCGGGCGTGACCACGGAGCAGCTAGGACAGGCTTATGTTGC
GGCAACGGCTGCTTCGGTTGCCACAGCGGTGGGATTTAATCGATTAATTG
CGCGAAACCCCAAATTGAGCCAAGGGATGATTGGACGGTTTGTGCCTTTG
CTGGCGGTGGCGGCCGCCAACTGTGTGAATATTCCGCTGATGCGACAGAG
AGAACTGGTAGAGGGTATTGACCTCAAAACGAGGGAGGGGGTGGTGGTGG
GGAAGAGCAAAGAGGCGGCCAAGACGGCGGTGGCGCAGGTGGTGCCCTCT
CGTATTCTGATGGCGACACCCGGCATGTTGTTCCCTCCGCTGATCATGGC
AAATCTGGAAAACACCGCGCTATTGCGGGCCACACCTGGCCTTGGGGCCC
CCATCATGGTGGCGATGACGGGGCTGTGTTTATCATTTTCGACCCCCTTG
TGTTGTGCGTTGTTCCCGCAGGAGGCCACGATTAAATTGAGTCAGGTGGA
ACCGGAGCTACAAGAGAACGCGAAAAAGATGACACCCGTGCCGGAGGTAT
TCTTCTATAATAAGGGGCTTTAGATGACAGGTGAATAGTTGATGAGGTGG
GAAATTGAGAAAAGAAAAGGAATGGGGGGACGAAGGACACTGTACGATGA
TATTTGAGATATTTTGGTGATGCAAGTCTTGGTAAGAGGAGAAGCAATGA
GAACTTGTGGGCCTTTGGGGGGAAAGGCGGGAGGGAAAGGGGCGTGCGCG
GGAGGCTGCATGTCTCACACATTCTTCAGCCGTGCATTGATGATTGTGGA
AGGAAGAGGGCGCGAGAGACGACTAAAGGCTTGCGCAGGAAGGCAGCGCG
AGAGGGAGAGGCAAGGAGAGGAAAATTCATGAATGCCACCGAAAAACAAA
ATCAGAATAAAAAAGAAGGTAAAAAAGAACATCAAAAGGT
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Coding sequence (CDS) from alignment at chr9:707249..709288+

>NO09G02350.1 ID=NO09G02350.1|Name=NO09G02350.1|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at chr9:707249..709288+ (Nannochloropsis oceanica)
ATGTTTGGCTGGGGCAAGAAGAAGGTCCAGGCGCCAGAGCCGGAGAAGCC
AGTGGTGCCCCGCCTCGACTTGAGCCAGCCCCGCTGGGACCAAAGCACCT
TTGAAGGCCGCGCCCGTCACTTTTTCACCACGACCAACCCGCTTAATGGC
CTAGCCTCGGATGCCGAGTTGGACCACGCCAAGGCCTTGTTGGAGCAATA
TAAAGCGGGAAAGGAACCGGCGGGGACGACGGACGAACAAATCTGGGAAG
CGAAGCATTTATATGACTCAGCATTCCACCCTGAAACGGGGGAGAAGCTT
TTCTTACCGGGTCGTATGTCATTTCAGGTGCCGGGTAATATGGTAATTAC
TGGGTGTATGATGCAATTTTACCGGTCTATTCCGGCAGTGGTGTTTTGGC
AATGGGTCAACCAGAGCTTTAATGCCGTCGTGAATTATTCGAATCGCAAT
GCTTCTGCGGGCGTGACCACGGAGCAGCTAGGACAGGCTTATGTTGCGGC
AACGGCTGCTTCGGTTGCCACAGCGGTGGGATTTAATCGATTAATTGCGC
GAAACCCCAAATTGAGCCAAGGGATGATTGGACGGTTTGTGCCTTTGCTG
GCGGTGGCGGCCGCCAACTGTGTGAATATTCCGCTGATGCGACAGAGAGA
ACTGGTAGAGGGTATTGACCTCAAAACGAGGGAGGGGGTGGTGGTGGGGA
AGAGCAAAGAGGCGGCCAAGACGGCGGTGGCGCAGGTGGTGCCCTCTCGT
ATTCTGATGGCGACACCCGGCATGTTGTTCCCTCCGCTGATCATGGCAAA
TCTGGAAAACACCGCGCTATTGCGGGCCACACCTGGCCTTGGGGCCCCCA
TCATGGTGGCGATGACGGGGCTGTGTTTATCATTTTCGACCCCCTTGTGT
TGTGCGTTGTTCCCGCAGGAGGCCACGATTAAATTGAGTCAGGTGGAACC
GGAGCTACAAGAGAACGCGAAAAAGATGACACCCGTGCCGGAGGTATTCT
TCTATAATAAGGGGCTTTAG
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Synonyms
Publications