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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:696260..699792 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G02320.1 vs.
Match: EWM27555.1 (hypothetical protein Naga_100015g41 [Nannochloropsis gaditana]) HSP 1 Score: 219.2 bits (557), Expect = 2.500e-53 Identity = 189/457 (41.36%), Postives = 237/457 (51.86%), Query Frame = 0
Query: 9 RGTRCNTNWENRHCGGEAQPLDWSTGFATSFSSHNPSAAFL--DQHYDDCEDCQDSDRFSSSSTSSSDSSLNDIPPSSQ---IAALVENVLGIMTSVQTIRKHPVLSTVLWLLGGTVDEKSAGCKTCSSPSSPSTTT--SSSSNPRISRNNNQ--LDNYEAHYQRKNSCSSNS-------------------------SSDGRNHDIRRLRWKTAADGGAPLAEPPDANANDRVVYFEEDSRRSCSSGNDGSGGDERPSSAVSGSGSTFGMASGGDSFQGGLLGGEEGGSIAVERIMHVDRVEQDDLEEMKGGGRRTRRRGSGANS-DSASAAAAGAMSSQHHRYLDHVNNAGVGYLPHHLHEQQGGGGGGREGGGDSDVSPQWGWYVTLTPPKPEFFNTSSSIKSNNNNNKNGNNYQYQQQQQQQQQQQQGVKHHHHR-HRHY-SRASDALRPSMT 429
R TRCNT+ E+ GG+ QPLDWST A+SFSS + S+ H+D C D + R+SSSS+ SS SS + + +++ AAL + V G+M SVQT RKHPVL+TVLWLLGG+V++K A + P PS++ S+S++ R S NN++ + N E + K+S N+ DGR DI RLRW A G PP DRV+YF E GG RPSSAV G SG SFQGG LGGE GG+IAVERI H+DR+E+DDL E + G R R RG GA D +A A S R L+H NN P E G G G D DVSPQWGWYV LTPPKPEFF NN G+++ + HHHHR HRH+ R + LRP+MT
Sbjct: 112 RSTRCNTSLEHHQGGGDGQPLDWSTSLASSFSSLSQSSRSFRTSNHHDVCHDGHNHCRYSSSSSDSSTSSCSSLGHNAEPSPFAALTDTVSGVMDSVQTARKHPVLATVLWLLGGSVEQKEAR----AGPKGPSSSLAGSASTSSRSSGNNDEDYICNDENNTVGKSSAPKNNPRQPCLADNMLARSRHPQTGNADDEDKDGRQPDIHRLRWTAGAATGTT---PPKTKVKDRVIYFLE-------------GG--RPSSAVPG----LAPPSGNRSFQGGRLGGENGGTIAVERITHMDRLEEDDLGEPRRG--RERERGKGARVYDQENATCA----STAQRQLEHYNNRCGECSPGIPPELAGSGAAGN----DPDVSPQWGWYVALTPPKPEFFQA-----GNNGAGLGGHHHHHHH-------------HHHHRGHRHHPPRVPEPLRPAMT 514
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G02320.1 ID=NO09G02320.1|Name=NO09G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=3435bp CTTTTCGAAAGACTTGGTGCTAGGACATTTTCCCGCACAAAGAAGGGACA AAATTTGTTCCGAACAATTGTTGGTGTTGAAGTACAAGAAACCCAACGCA CGCATGTGTCAGATGAAGCACTGCTTATTCGCATCCATAGTTTCCCGCGC CACACTTTACACCTCCTCAAAGACATATAATAAGCCCACTTTGTTGAGAA TTTAAAGCCAGTCTTGATGCCGGTTTCGTTGGCCATGTGGCCGCGGCACG AGCAGCTTGCACGGGATATGTGCGAGCGCCAAGGCTGCGAGAAGAATTGA GGGAAATGTCAAGAGATGGGGGCCTTGTGTTTTCTCTCGTACGTAGGCAC GCAGTTTGGGAAACCATCCCGGACCTCACCACAGAATCTATGAGAGGCCA AAGCTGAAAGATGAAGGATTCTTGGCTGTGGATGACGAGGGCACTGTGAG GGCAAAGAGACCACGGGGAATGCGAAGGAATGTCACTATCAACAAGCCTT CAATCTATTTATTTCGATGTCAAGCATTTCGATGCCATGACCACGTCGAA CGCACGCCTTCTATAATGCACCACTTACCCTGCTCCACGCCATCCCTACA CACACGCATGTCACAGGTGCTTCAGGCTCTATCGTGGACACGGCTTTGGA AGACTGGGGTAGAAGGCGTTCAAAGCTTGTTGACACATCGAGAAATGCTC TTGGCGGCGCGCGTCCATCTCCTGCTGTGTGTGCGGGGCACCGGTGTCCT GTGCATGAATGCATAGAGCCACATCTTCACATCGAGGTACCCGCTGTAAC ACTAACTGGGAGAATCGTCACTGTGGAGGGGAGGCACAGCCCCTGGACTG GAGCACGGGATTTGCCACCTCCTTTTCCTCTCACAATCCTTCAGCCGCTT TTTTGGACCAGCACTACGACGACTGCGAGGACTGCCAAGACAGCGATCGT TTCAGCAGCAGCAGCACAAGCAGCAGTGACTCCTCATTAAACGACATTCC GCCGTCGTCTCAGATCGCAGCATTGGTGGAAAACGTTTTAGGCATCATGA CAAGTGTGCAGACCATCCGGAAGCACCCCGTACTCTCTACAGTCCTTTGG TTGCTCGGGGGAACAGTAGACGAAAAATCCGCCGGATGCAAGACCTGCTC TTCCCCCTCCTCCCCCTCCACCACCACATCCTCCTCCTCTAACCCCCGCA TCTCACGCAACAACAATCAGTTGGACAACTATGAGGCACACTACCAGCGG AAGAACAGCTGCAGCAGCAACAGCAGCAGCGATGGCCGGAATCATGACAT AAGGCGGTTGCGCTGGAAAACGGCAGCCGATGGTGGTGCCCCGTTAGCAG AACCGCCAGATGCGAATGCGAATGATCGAGTTGTTTATTTTGAGGAGGAC AGTCGTCGAAGCTGTAGCAGCGGAAATGATGGTAGTGGGGGGGATGAGAG GCCTTCCTCGGCAGTATCCGGGTCAGGGTCAACTTTTGGTATGGCCTCAG GGGGTGACTCGTTTCAGGGGGGGTTGTTGGGAGGGGAGGAAGGAGGGTCG ATAGCCGTGGAGAGGATTATGCATGTGGATAGGGTAGAGCAGGATGATTT GGAGGAGATGAAGGGAGGGGGGAGGAGGACGAGGCGAAGAGGTAGTGGTG CGAATAGTGATTCAGCGAGTGCGGCTGCCGCTGGGGCTATGAGCAGTCAG CACCATCGGTATTTGGATCATGTTAATAATGCTGGTGTAGGATACTTGCC GCATCACTTGCATGAGCAGCAGGGAGGAGGAGGAGGTGGGAGGGAAGGAG GGGGTGACTCAGACGTCTCGCCGCAATGGGGATGGTATGTTACTCTGACG CCGCCCAAGCCCGAGTTCTTTAACACCAGCAGCAGTATTAAGAGCAACAA CAACAATAACAAAAACGGGAACAACTACCAATATCAGCAGCAGCAGCAAC AACAACAACAACAGCAGCAGGGGGTGAAACATCACCACCATCGCCATCGT CACTACTCCCGCGCCTCGGATGCACTGCGGCCAAGCATGACCTAATGTGA TTGTCTTGAAGGGTGGAGTGAGGACCGAACTTGACCTGATGTAAAGGGGG GAAGAAAGAAGGGGAAGGGGGGGTCTCATCATCATTTTTTGCGCCCCAAT ATGACGTGAATTTTTGGGTCTTTTTCACTGAGGGATGTTAGTAGAAGGAG AGAGGGATATGGAGAGATAAGGGGGCTTTGAGTGGCAAAAGTAGTTTGTG AATGAGTCCGTGCATGCATGAGAGTGATGATTTTTGATGGGAGAGCAAAC AAAAGAGGGGGGGATGAGCAGGTGATTGCTGATGATTTTTTTCAGGGGAG AAAGAAAAAAGTGTGTGTGGTTTTGGAGCATCGTCATCGGTTTTTAAAAA ACTTTTTATCCAAAGAAGCCTTCACAGGAGCATAAAGCAAGAGCGACACC GAGGCGCAGCGCCTCCCTGTGGCGAGCGGGAAGAGGGTAAAAATTTAAAC AATAAGACGCGTGTACACACACAGATGCTGCAGCAGCACCAGCAGCAGTA GCAGCCCTTTCCCCGGGCTCTACAATTCAACGCTCCAAAGACAAAGCAGG CTCAACCGACAACAGTTTTTCGTACGAATAAGGAGAAGGAGAAGAAGTTG AAGACATAGTAGTAGAAGGACGAGAAGACGACAACAAAATGGAAAAAGAA GAAGATGAAGAAAAAGAATGAACCATGGAAGAATGAAATTGGGGAAATAG TAGTAGTACAGAGACAAGGGACGCCGAGACATAAAGAAAGAGAAAATGTG AGAGAGAATGAATGTTGGCGGGGATATGTGGGAGGAGGAATCGCGAAGAC GCGGCAGGGATGAAGGAAGCACGCACGCAATAATTCAGGCACGGACAGAT AGGGGAAGCTGCCTTTCCTACCCGTTGATGTATGTAGCAAGAAAATGTCC CCACGACCACCGCCAGCAAGTTGAATGATCATCCATCCGAAAGAGTTAAG GTGAGGATGCGATGACAACAAAGGAAGAGAAAAAAGATCGGCTCCATTAG GGGCGGGCAGGAAGAACAACAGCAGTGGCAGCAGCAGCACCAGCAGCAAG GACAGGGCAGCAGTTTTGAGAGTGTAGAAAAAAAGAACTTCCTCCCCATG GCACAGATTAGAAAGACGTGAGACGGAAAAAGGGAGGGAGGGAAGACGGG TCAGCAGTGACAGAACGTATGGGGATTGATTGGGCTATGGGGGAAAGAGG GAAGGGGAAAGGCGTTCAGACTCCGTGCACCAGGAGCCAGCTACCTGCTG CCACAACAGAAACGAACAAAAAGAACATGAACGAAAGCCTAACCACAAGG GAAAGCATGAAACGAGAGAAAAAGACAAGAAAGGAGTTAGAGGCTACAAT TATCAACAAGTCAACAAAGTGAGCACCTACACAAA back to topprotein sequence of NO09G02320.1 >NO09G02320.1-protein ID=NO09G02320.1-protein|Name=NO09G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp MHRATSSHRGTRCNTNWENRHCGGEAQPLDWSTGFATSFSSHNPSAAFLD QHYDDCEDCQDSDRFSSSSTSSSDSSLNDIPPSSQIAALVENVLGIMTSV QTIRKHPVLSTVLWLLGGTVDEKSAGCKTCSSPSSPSTTTSSSSNPRISR NNNQLDNYEAHYQRKNSCSSNSSSDGRNHDIRRLRWKTAADGGAPLAEPP DANANDRVVYFEEDSRRSCSSGNDGSGGDERPSSAVSGSGSTFGMASGGD SFQGGLLGGEEGGSIAVERIMHVDRVEQDDLEEMKGGGRRTRRRGSGANS DSASAAAAGAMSSQHHRYLDHVNNAGVGYLPHHLHEQQGGGGGGREGGGD SDVSPQWGWYVTLTPPKPEFFNTSSSIKSNNNNNKNGNNYQYQQQQQQQQ QQQQGVKHHHHRHRHYSRASDALRPSMT* back to topmRNA from alignment at chr9:696260..699792+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G02320.1 ID=NO09G02320.1|Name=NO09G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=3533bp|location=Sequence derived from alignment at chr9:696260..699792+ (Nannochloropsis oceanica) CTTTTCGAAAGACTTGGTGCTAGGACATTTTCCCGCACAAAGAAGGGACA
AAATTTGTTCCGAACAATTGTTGGTGTTGAAGTACAAGAAACCCAACGCA
CGCATGTGTCAGATGAAGCACTGCTTATTCGCATCCATAGTTTCCCGCGC
CACACTTTACACCTCCTCAAAGACATATAATAAGCCCACTTTGTTGAGAA
TTTAAAGCCAGTCTTGATGCCGGTTTCGTTGGCCATGTGGCCGCGGCACG
AGCAGCTTGCACGGGATATGTGCGAGCGCCAAGGCTGCGAGAAGAATTGA
GGGAAATGTCAAGAGATGGGGGCCTTGTGTTTTCTCTCGTACGTAGGCAC
GCAGTTTGGGAAACCATCCCGGACCTCACCACAGAATCTATGAGAGGCCA
AAGCTGAAAGATGAAGGATTCTTGGCTGTGGATGACGAGGGCACTGTGAG
GGCAAAGAGACCACGGGGAATGCGAAGGAATGTCACTATCAACAAGCCTT
CAATCTATTTATTTCGATGTCAAGCATTTCGATGCCATGACCACGTCGAA
CGCACGCCTTCTATAATGCACCACTTACCCTGCTCCACGCCATCCCTACA
CACACGCATGTCACAGGTGCTTCAGGCTCTATCGTGGACACGGCTTTGGA
AGACTGGGGTAGAAGGCGTTCAAAGCTTGTTGACACATCGAGAAATGCTC
TTGGCGGCGCGCGTCCATCTCCTGCTGTGTGTGCGGGGCACCGGTGTCCT
GTGCATGAATGCATAGAGCCACATCTTCACATCGAGGTACCCGCTGTAAC
ACTAACTGGGAGAATCGTCACTGTGGAGGGGAGGCACAGCCCCTGGACTG
GAGCACGGGATTTGCCACCTCCTTTTCCTCTCACAATCCTTCAGCCGCTT
TTTTGGACCAGCACTACGACGACTGCGAGGACTGCCAAGACAGCGATCGT
TTCAGCAGCAGCAGCACAAGCAGCAGTGACTCCTCATTAAACGACATTCC
GCCGTCGTCTCAGATCGCAGCATTGGTGGAAAACGTTTTAGGCATCATGA
CAAGTAAGTCCCCCTCTTCGACCGACGAAAGTCGGCCATTCCCTGGTTCA
ACCCTGGTACCGATTCTCCGCCCTTTCCCCCTTCCTTCCCCATCACTGTA
GGTGTGCAGACCATCCGGAAGCACCCCGTACTCTCTACAGTCCTTTGGTT
GCTCGGGGGAACAGTAGACGAAAAATCCGCCGGATGCAAGACCTGCTCTT
CCCCCTCCTCCCCCTCCACCACCACATCCTCCTCCTCTAACCCCCGCATC
TCACGCAACAACAATCAGTTGGACAACTATGAGGCACACTACCAGCGGAA
GAACAGCTGCAGCAGCAACAGCAGCAGCGATGGCCGGAATCATGACATAA
GGCGGTTGCGCTGGAAAACGGCAGCCGATGGTGGTGCCCCGTTAGCAGAA
CCGCCAGATGCGAATGCGAATGATCGAGTTGTTTATTTTGAGGAGGACAG
TCGTCGAAGCTGTAGCAGCGGAAATGATGGTAGTGGGGGGGATGAGAGGC
CTTCCTCGGCAGTATCCGGGTCAGGGTCAACTTTTGGTATGGCCTCAGGG
GGTGACTCGTTTCAGGGGGGGTTGTTGGGAGGGGAGGAAGGAGGGTCGAT
AGCCGTGGAGAGGATTATGCATGTGGATAGGGTAGAGCAGGATGATTTGG
AGGAGATGAAGGGAGGGGGGAGGAGGACGAGGCGAAGAGGTAGTGGTGCG
AATAGTGATTCAGCGAGTGCGGCTGCCGCTGGGGCTATGAGCAGTCAGCA
CCATCGGTATTTGGATCATGTTAATAATGCTGGTGTAGGATACTTGCCGC
ATCACTTGCATGAGCAGCAGGGAGGAGGAGGAGGTGGGAGGGAAGGAGGG
GGTGACTCAGACGTCTCGCCGCAATGGGGATGGTATGTTACTCTGACGCC
GCCCAAGCCCGAGTTCTTTAACACCAGCAGCAGTATTAAGAGCAACAACA
ACAATAACAAAAACGGGAACAACTACCAATATCAGCAGCAGCAGCAACAA
CAACAACAACAGCAGCAGGGGGTGAAACATCACCACCATCGCCATCGTCA
CTACTCCCGCGCCTCGGATGCACTGCGGCCAAGCATGACCTAATGTGATT
GTCTTGAAGGGTGGAGTGAGGACCGAACTTGACCTGATGTAAAGGGGGGA
AGAAAGAAGGGGAAGGGGGGGTCTCATCATCATTTTTTGCGCCCCAATAT
GACGTGAATTTTTGGGTCTTTTTCACTGAGGGATGTTAGTAGAAGGAGAG
AGGGATATGGAGAGATAAGGGGGCTTTGAGTGGCAAAAGTAGTTTGTGAA
TGAGTCCGTGCATGCATGAGAGTGATGATTTTTGATGGGAGAGCAAACAA
AAGAGGGGGGGATGAGCAGGTGATTGCTGATGATTTTTTTCAGGGGAGAA
AGAAAAAAGTGTGTGTGGTTTTGGAGCATCGTCATCGGTTTTTAAAAAAC
TTTTTATCCAAAGAAGCCTTCACAGGAGCATAAAGCAAGAGCGACACCGA
GGCGCAGCGCCTCCCTGTGGCGAGCGGGAAGAGGGTAAAAATTTAAACAA
TAAGACGCGTGTACACACACAGATGCTGCAGCAGCACCAGCAGCAGTAGC
AGCCCTTTCCCCGGGCTCTACAATTCAACGCTCCAAAGACAAAGCAGGCT
CAACCGACAACAGTTTTTCGTACGAATAAGGAGAAGGAGAAGAAGTTGAA
GACATAGTAGTAGAAGGACGAGAAGACGACAACAAAATGGAAAAAGAAGA
AGATGAAGAAAAAGAATGAACCATGGAAGAATGAAATTGGGGAAATAGTA
GTAGTACAGAGACAAGGGACGCCGAGACATAAAGAAAGAGAAAATGTGAG
AGAGAATGAATGTTGGCGGGGATATGTGGGAGGAGGAATCGCGAAGACGC
GGCAGGGATGAAGGAAGCACGCACGCAATAATTCAGGCACGGACAGATAG
GGGAAGCTGCCTTTCCTACCCGTTGATGTATGTAGCAAGAAAATGTCCCC
ACGACCACCGCCAGCAAGTTGAATGATCATCCATCCGAAAGAGTTAAGGT
GAGGATGCGATGACAACAAAGGAAGAGAAAAAAGATCGGCTCCATTAGGG
GCGGGCAGGAAGAACAACAGCAGTGGCAGCAGCAGCACCAGCAGCAAGGA
CAGGGCAGCAGTTTTGAGAGTGTAGAAAAAAAGAACTTCCTCCCCATGGC
ACAGATTAGAAAGACGTGAGACGGAAAAAGGGAGGGAGGGAAGACGGGTC
AGCAGTGACAGAACGTATGGGGATTGATTGGGCTATGGGGGAAAGAGGGA
AGGGGAAAGGCGTTCAGACTCCGTGCACCAGGAGCCAGCTACCTGCTGCC
ACAACAGAAACGAACAAAAAGAACATGAACGAAAGCCTAACCACAAGGGA
AAGCATGAAACGAGAGAAAAAGACAAGAAAGGAGTTAGAGGCTACAATTA
TCAACAAGTCAACAAAGTGAGCACCTACACAAA back to topCoding sequence (CDS) from alignment at chr9:696260..699792+ >NO09G02320.1 ID=NO09G02320.1|Name=NO09G02320.1|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at chr9:696260..699792+ (Nannochloropsis oceanica) ATGCATAGAGCCACATCTTCACATCGAGGTACCCGCTGTAACACTAACTG GGAGAATCGTCACTGTGGAGGGGAGGCACAGCCCCTGGACTGGAGCACGG GATTTGCCACCTCCTTTTCCTCTCACAATCCTTCAGCCGCTTTTTTGGAC CAGCACTACGACGACTGCGAGGACTGCCAAGACAGCGATCGTTTCAGCAG CAGCAGCACAAGCAGCAGTGACTCCTCATTAAACGACATTCCGCCGTCGT CTCAGATCGCAGCATTGGTGGAAAACGTTTTAGGCATCATGACAAGTGTG CAGACCATCCGGAAGCACCCCGTACTCTCTACAGTCCTTTGGTTGCTCGG GGGAACAGTAGACGAAAAATCCGCCGGATGCAAGACCTGCTCTTCCCCCT CCTCCCCCTCCACCACCACATCCTCCTCCTCTAACCCCCGCATCTCACGC AACAACAATCAGTTGGACAACTATGAGGCACACTACCAGCGGAAGAACAG CTGCAGCAGCAACAGCAGCAGCGATGGCCGGAATCATGACATAAGGCGGT TGCGCTGGAAAACGGCAGCCGATGGTGGTGCCCCGTTAGCAGAACCGCCA GATGCGAATGCGAATGATCGAGTTGTTTATTTTGAGGAGGACAGTCGTCG AAGCTGTAGCAGCGGAAATGATGGTAGTGGGGGGGATGAGAGGCCTTCCT CGGCAGTATCCGGGTCAGGGTCAACTTTTGGTATGGCCTCAGGGGGTGAC TCGTTTCAGGGGGGGTTGTTGGGAGGGGAGGAAGGAGGGTCGATAGCCGT GGAGAGGATTATGCATGTGGATAGGGTAGAGCAGGATGATTTGGAGGAGA TGAAGGGAGGGGGGAGGAGGACGAGGCGAAGAGGTAGTGGTGCGAATAGT GATTCAGCGAGTGCGGCTGCCGCTGGGGCTATGAGCAGTCAGCACCATCG GTATTTGGATCATGTTAATAATGCTGGTGTAGGATACTTGCCGCATCACT TGCATGAGCAGCAGGGAGGAGGAGGAGGTGGGAGGGAAGGAGGGGGTGAC TCAGACGTCTCGCCGCAATGGGGATGGTATGTTACTCTGACGCCGCCCAA GCCCGAGTTCTTTAACACCAGCAGCAGTATTAAGAGCAACAACAACAATA ACAAAAACGGGAACAACTACCAATATCAGCAGCAGCAGCAACAACAACAA CAACAGCAGCAGGGGGTGAAACATCACCACCATCGCCATCGTCACTACTC CCGCGCCTCGGATGCACTGCGGCCAAGCATGACCTAA back to top
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