NO09G02290.1, NO09G02290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02290.1
Unique NameNO09G02290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1212
Alignment locationchr9:690135..691346 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:690135..691346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G02290.1 vs.
Match: EWM27587.1 (bile acid:sodium symporter family protein [Nannochloropsis gaditana])

HSP 1 Score: 638.6 bits (1646), Expect = 1.300e-179
Identity = 350/415 (84.34%), Postives = 372/415 (89.64%), Query Frame = 0
Query:    1 MKFFSTVLLLSTAA----VQGFILPAPRA-FTTSLTT-------SRSTPSMALSTAMGANSAWRFLSAVRKSAAISAPAKSTTALASTAAGGLAPKKMTGFEMYEKGSELIVNLFPIWTVLASGLALYRPDLFAWFTTKYFTAGLGLLMLSMGITLSPQDFADVLKRPSAVLVGFIFCYAFMPAFAYGTAQAFSLSPEMVAGLVLVGSINGGQASNLCTYIAKGDVALSVMMTTATTLGAIFMTPLLCKFLLGAIVPVDAVGIALSTIQVVLAPIVLGMLANKYMNRVVKAVLPFSPVVGMVSTCLLVASAVAQCAPAILGAGWSLQLATIFYHLVAGILGYGVPKAMGFSETDSRTMAIETAMKSSAFGFLLASLHFPNFLVRVPPAVSVVWMAVTGSTLAVIWRFIPVKDGKK 404
            MK  ++V++LS AA    V GF+ PAP+A F   L         SR++PSMALSTAMGAN AWRFLSA RK AA+S P KS+TALAS+AA     KKMT FEMYEKGSELIVNLFPIWTVL+SGLALYRP+LFAWFTTKYFT GLGLLMLSMGITLSPQDFADVLKRPSAVLVGFIFCY FMPAFAY TAQ F+LSPEMVAGLVLVGSINGGQASNLCTYIAKGDVALSVMMTTATTLGAIFMTPLLCKFLLGAIVPVDAVGIALST+QVVLAPIVLGMLANK++NR VKAVLPFSPVVGMVSTCLLVASAVAQCAPAILGAGWSLQ+ATIFYHLVAG+ GY +P+ + FSETDSRTMAIETAMKSSAFGFLLASLHFPNFLVRVPPAVSVVWMAVTGSTLAVIWRFIPVKD KK
Sbjct:    1 MKLLTSVVVLSAAAILSVVNGFMTPAPQASFVAKLDPAMSRIHRSRASPSMALSTAMGANGAWRFLSAARK-AAVSLPTKSSTALASSAADMAPKKKMTAFEMYEKGSELIVNLFPIWTVLSSGLALYRPELFAWFTTKYFTWGLGLLMLSMGITLSPQDFADVLKRPSAVLVGFIFCYLFMPAFAYATAQGFALSPEMVAGLVLVGSINGGQASNLCTYIAKGDVALSVMMTTATTLGAIFMTPLLCKFLLGAIVPVDAVGIALSTVQVVLAPIVLGMLANKFLNRAVKAVLPFSPVVGMVSTCLLVASAVAQCAPAILGAGWSLQIATIFYHLVAGVAGYAIPRFLKFSETDSRTMAIETAMKSSAFGFLLASLHFPNFLVRVPPAVSVVWMAVTGSTLAVIWRFIPVKDEKK 414          
The following BLAST results are available for this feature:
BLAST of NO09G02290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27587.11.300e-17984.34bile acid:sodium symporter family protein [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02290NO09G02290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02290.1NO09G02290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02290.1.cds1NO09G02290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02290.1 ID=NO09G02290.1|Name=NO09G02290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp
ATGAAGTTTTTCAGCACCGTCCTTCTCCTGTCTACCGCTGCGGTGCAGGG
GTTCATCCTGCCGGCGCCCCGAGCCTTCACCACTTCCCTCACTACCAGCC
GCTCGACCCCAAGCATGGCCTTGAGCACAGCCATGGGTGCGAACAGTGCT
TGGCGTTTCCTATCCGCGGTCCGCAAGTCTGCTGCTATCTCTGCTCCCGC
CAAATCGACGACTGCCTTGGCCTCGACGGCAGCCGGCGGGTTGGCGCCCA
AGAAGATGACCGGCTTCGAGATGTACGAGAAGGGAAGCGAGCTCATCGTG
AACCTTTTTCCTATTTGGACTGTCCTTGCCTCTGGGCTCGCGCTGTACCG
TCCTGATTTGTTCGCGTGGTTCACAACCAAATATTTCACGGCGGGCCTCG
GCTTGTTGATGCTCTCCATGGGGATAACTCTCTCCCCTCAAGATTTTGCT
GATGTCCTGAAGCGGCCCTCGGCGGTCCTCGTGGGTTTCATCTTCTGTTA
TGCCTTCATGCCTGCCTTCGCGTACGGCACCGCCCAGGCGTTCTCGTTGT
CCCCTGAGATGGTGGCGGGGCTTGTGCTGGTCGGGTCTATCAACGGCGGA
CAGGCTTCCAACCTGTGCACTTACATTGCCAAGGGCGACGTAGCCTTGTC
CGTGATGATGACGACCGCGACGACCCTTGGGGCTATTTTCATGACGCCTC
TCCTGTGCAAATTCTTGCTGGGGGCCATCGTGCCCGTGGATGCCGTAGGG
ATCGCCTTGTCGACTATCCAGGTTGTCCTTGCCCCCATTGTCCTCGGCAT
GCTTGCGAACAAGTACATGAATCGCGTTGTCAAGGCCGTGTTGCCCTTCT
CGCCCGTTGTGGGCATGGTCTCCACGTGTTTGCTCGTGGCGTCGGCGGTT
GCACAATGTGCCCCTGCTATTCTTGGAGCTGGATGGAGCTTGCAATTGGC
CACGATTTTCTATCACTTGGTGGCGGGTATCTTGGGGTATGGAGTACCCA
AGGCGATGGGATTCTCGGAAACCGACTCGCGTACCATGGCCATTGAGACG
GCGATGAAGTCGTCGGCGTTTGGTTTCTTGTTAGCGAGTTTGCATTTCCC
TAACTTTTTGGTACGTGTCCCCCCTGCGGTGTCGGTCGTGTGGATGGCTG
TGACTGGGTCGACGCTTGCAGTGATTTGGCGTTTTATCCCCGTGAAGGAT
GGGAAGAAGTAA
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protein sequence of NO09G02290.1

>NO09G02290.1-protein ID=NO09G02290.1-protein|Name=NO09G02290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MKFFSTVLLLSTAAVQGFILPAPRAFTTSLTTSRSTPSMALSTAMGANSA
WRFLSAVRKSAAISAPAKSTTALASTAAGGLAPKKMTGFEMYEKGSELIV
NLFPIWTVLASGLALYRPDLFAWFTTKYFTAGLGLLMLSMGITLSPQDFA
DVLKRPSAVLVGFIFCYAFMPAFAYGTAQAFSLSPEMVAGLVLVGSINGG
QASNLCTYIAKGDVALSVMMTTATTLGAIFMTPLLCKFLLGAIVPVDAVG
IALSTIQVVLAPIVLGMLANKYMNRVVKAVLPFSPVVGMVSTCLLVASAV
AQCAPAILGAGWSLQLATIFYHLVAGILGYGVPKAMGFSETDSRTMAIET
AMKSSAFGFLLASLHFPNFLVRVPPAVSVVWMAVTGSTLAVIWRFIPVKD
GKK*
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mRNA from alignment at chr9:690135..691346+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02290.1 ID=NO09G02290.1|Name=NO09G02290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp|location=Sequence derived from alignment at chr9:690135..691346+ (Nannochloropsis oceanica)
ATGAAGTTTTTCAGCACCGTCCTTCTCCTGTCTACCGCTGCGGTGCAGGG GTTCATCCTGCCGGCGCCCCGAGCCTTCACCACTTCCCTCACTACCAGCC GCTCGACCCCAAGCATGGCCTTGAGCACAGCCATGGGTGCGAACAGTGCT TGGCGTTTCCTATCCGCGGTCCGCAAGTCTGCTGCTATCTCTGCTCCCGC CAAATCGACGACTGCCTTGGCCTCGACGGCAGCCGGCGGGTTGGCGCCCA AGAAGATGACCGGCTTCGAGATGTACGAGAAGGGAAGCGAGCTCATCGTG AACCTTTTTCCTATTTGGACTGTCCTTGCCTCTGGGCTCGCGCTGTACCG TCCTGATTTGTTCGCGTGGTTCACAACCAAATATTTCACGGCGGGCCTCG GCTTGTTGATGCTCTCCATGGGGATAACTCTCTCCCCTCAAGATTTTGCT GATGTCCTGAAGCGGCCCTCGGCGGTCCTCGTGGGTTTCATCTTCTGTTA TGCCTTCATGCCTGCCTTCGCGTACGGCACCGCCCAGGCGTTCTCGTTGT CCCCTGAGATGGTGGCGGGGCTTGTGCTGGTCGGGTCTATCAACGGCGGA CAGGCTTCCAACCTGTGCACTTACATTGCCAAGGGCGACGTAGCCTTGTC CGTGATGATGACGACCGCGACGACCCTTGGGGCTATTTTCATGACGCCTC TCCTGTGCAAATTCTTGCTGGGGGCCATCGTGCCCGTGGATGCCGTAGGG ATCGCCTTGTCGACTATCCAGGTTGTCCTTGCCCCCATTGTCCTCGGCAT GCTTGCGAACAAGTACATGAATCGCGTTGTCAAGGCCGTGTTGCCCTTCT CGCCCGTTGTGGGCATGGTCTCCACGTGTTTGCTCGTGGCGTCGGCGGTT GCACAATGTGCCCCTGCTATTCTTGGAGCTGGATGGAGCTTGCAATTGGC CACGATTTTCTATCACTTGGTGGCGGGTATCTTGGGGTATGGAGTACCCA AGGCGATGGGATTCTCGGAAACCGACTCGCGTACCATGGCCATTGAGACG GCGATGAAGTCGTCGGCGTTTGGTTTCTTGTTAGCGAGTTTGCATTTCCC TAACTTTTTGGTACGTGTCCCCCCTGCGGTGTCGGTCGTGTGGATGGCTG TGACTGGGTCGACGCTTGCAGTGATTTGGCGTTTTATCCCCGTGAAGGAT GGGAAGAAGTAA
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Coding sequence (CDS) from alignment at chr9:690135..691346+

>NO09G02290.1 ID=NO09G02290.1|Name=NO09G02290.1|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at chr9:690135..691346+ (Nannochloropsis oceanica)
ATGAAGTTTTTCAGCACCGTCCTTCTCCTGTCTACCGCTGCGGTGCAGGG
GTTCATCCTGCCGGCGCCCCGAGCCTTCACCACTTCCCTCACTACCAGCC
GCTCGACCCCAAGCATGGCCTTGAGCACAGCCATGGGTGCGAACAGTGCT
TGGCGTTTCCTATCCGCGGTCCGCAAGTCTGCTGCTATCTCTGCTCCCGC
CAAATCGACGACTGCCTTGGCCTCGACGGCAGCCGGCGGGTTGGCGCCCA
AGAAGATGACCGGCTTCGAGATGTACGAGAAGGGAAGCGAGCTCATCGTG
AACCTTTTTCCTATTTGGACTGTCCTTGCCTCTGGGCTCGCGCTGTACCG
TCCTGATTTGTTCGCGTGGTTCACAACCAAATATTTCACGGCGGGCCTCG
GCTTGTTGATGCTCTCCATGGGGATAACTCTCTCCCCTCAAGATTTTGCT
GATGTCCTGAAGCGGCCCTCGGCGGTCCTCGTGGGTTTCATCTTCTGTTA
TGCCTTCATGCCTGCCTTCGCGTACGGCACCGCCCAGGCGTTCTCGTTGT
CCCCTGAGATGGTGGCGGGGCTTGTGCTGGTCGGGTCTATCAACGGCGGA
CAGGCTTCCAACCTGTGCACTTACATTGCCAAGGGCGACGTAGCCTTGTC
CGTGATGATGACGACCGCGACGACCCTTGGGGCTATTTTCATGACGCCTC
TCCTGTGCAAATTCTTGCTGGGGGCCATCGTGCCCGTGGATGCCGTAGGG
ATCGCCTTGTCGACTATCCAGGTTGTCCTTGCCCCCATTGTCCTCGGCAT
GCTTGCGAACAAGTACATGAATCGCGTTGTCAAGGCCGTGTTGCCCTTCT
CGCCCGTTGTGGGCATGGTCTCCACGTGTTTGCTCGTGGCGTCGGCGGTT
GCACAATGTGCCCCTGCTATTCTTGGAGCTGGATGGAGCTTGCAATTGGC
CACGATTTTCTATCACTTGGTGGCGGGTATCTTGGGGTATGGAGTACCCA
AGGCGATGGGATTCTCGGAAACCGACTCGCGTACCATGGCCATTGAGACG
GCGATGAAGTCGTCGGCGTTTGGTTTCTTGTTAGCGAGTTTGCATTTCCC
TAACTTTTTGGTACGTGTCCCCCCTGCGGTGTCGGTCGTGTGGATGGCTG
TGACTGGGTCGACGCTTGCAGTGATTTGGCGTTTTATCCCCGTGAAGGAT
GGGAAGAAGTAA
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Synonyms
Publications