NO09G02240.1, NO09G02240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02240.1
Unique NameNO09G02240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1175
Alignment locationchr9:677771..679414 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:677771..679414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02240.1 vs.
Match: EWM27599.1 (Ribosomal protein L18e/L15P [Nannochloropsis gaditana])

HSP 1 Score: 368.6 bits (945), Expect = 1.200e-98
Identity = 186/191 (97.38%), Postives = 190/191 (99.48%), Query Frame = 0 
Query:    1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSSFNAVVLKRLFMSKTNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHDREALSHFGHRSTVGNVHTHDNVKPYTRAKGRKFEKARGRRRSTGFKI 192
            MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDS+FNAV+LKRLFMSK NRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHDREALSHFGHRSTVGNVHTHDNVKPYTR+KGRKFEKARGRRRSTGFK+
Sbjct:    1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHDREALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
The following BLAST results are available for this feature:
BLAST of NO09G02240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27599.11.200e-9897.38Ribosomal protein L18e/L15P [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02240NO09G02240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02240.1NO09G02240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02240.1.cds1NO09G02240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02240.1.cds2NO09G02240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02240.1 ID=NO09G02240.1|Name=NO09G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1175bp
TGCCATTCCTCTACCCCACCGCCCTGCTGCTTAGCCGGTCTCATCCATGT
GAAATGTCTTGCTCTTGCACATCTGCTAGAGGAAGGCGATGAACACACGT
TAACGCTTGGATAAGAAGCATGCCGTGAAGAAGTGAAGGTCGACTTCCTC
CCACCCTTCCCTTGCCTCCTCCACCAGCGGCTGGCGAAGAACGAGAGGAG
GGGCTGAGGGTGGTCTCCAATGGAGCTCGTAATGATTAGAAACTTGCTTT
TCCAAAGCATGGACTGGACTCTAACCTTCATAAGAAGGAGGGCATGACAG
CCTACTTATTCCTGTGGTTATGATCGAGCTCTCAGAACCATCGGCCTTCT
CACGCCAACCCTACGCGCACGGAGGTGTCTTCATGCCTCCCCTCCCTTCC
TCACATCGCACTCATTGTCTGATGCCTTCCAACGATTCCCACCACCAACA
CCATACAGGGTCCGTCTCACAACTATGGGGATTGATCTCAAGAGCGGTGG
CCGCCGCACGGGGCACAAGACTCGTACGGCCCCCAAGTCCGACAACGTCT
ACCTGAAGCTCTTAGTCAAGCTCTACCGGTTCCTGGCCCGTCGTACCGAC
TCCTCCTTCAACGCCGTGGTGCTCAAGCGTTTGTTTATGTCCAAGACGAA
CCGTCCCCCTATCGCCATCTCCCGGCTCGTCCGTCACATGAAGGGGAAGG
AGGGGAAGACTGCTGTCATTGTCGGGACCATCACCGACGATGCGCGCATG
CTCGAGGTGCCCAAGCTGAGCGTTGCTGCCCTTAAGGTGACGGCCACGGC
CCGCGCACGTATCCTCCAGGCAGGCGGCGAGATTTTGACGTTTGATGAGC
TGGCCCTGCGAGCGCCCAAGGGAACTAATTGTGTGTTGCTGCGTGGGCCG
CACGATCGGGAGGCATTGTCCCACTTTGGGCATCGCTCGACGGTGGGTAA
CGTGCACACGCACGACAATGTCAAGCCGTACACTCGGGCCAAGGGGAGGA
AGTTCGAGAAGGCCCGTGGGCGTCGGCGCTCGACTGGATTCAAGATCTAA
GGCGGAAGAGGGCGCGAGGGAGGGAAGGAGGGCGGGCGGGAGGGCTGAAG
GGCTGTTTGGTGCGACGCATTTATTCTGCCTGCACGTTCCGTGTCGGTGC
GGACCACCCGCTTTAGGAGGGGATT
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protein sequence of NO09G02240.1

>NO09G02240.1-protein ID=NO09G02240.1-protein|Name=NO09G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSSFNAVVL
KRLFMSKTNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSV
AALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHDREALSH
FGHRSTVGNVHTHDNVKPYTRAKGRKFEKARGRRRSTGFKI*
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mRNA from alignment at chr9:677771..679414+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02240.1 ID=NO09G02240.1|Name=NO09G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp|location=Sequence derived from alignment at chr9:677771..679414+ (Nannochloropsis oceanica)
TGCCATTCCTCTACCCCACCGCCCTGCTGCTTAGCCGGTCTCATCCATGT
GAAATGTCTTGCTCTTGCACATCTGCTAGAGGAAGGCGATGAACACACGT
TAACGCTTGGATAAGAAGCATGCCGTGAAGAAGTGAAGGTCGACTTCCTC
CCACCCTTCCCTTGCCTCCTCCACCAGCGGCTGGCGAAGAACGAGAGGAG
GGGCTGAGGGTGGTCTCCAATGGAGCTCGTAATGATTAGAAACTTGCTTT
TCCAAAGCATGGACTGGACTCTAACCTTCATAAGAAGGAGGGCATGACAG
CCTACTTATTCCTGTGGTTATGATCGAGCTCTCAGAACCATCGGCCTTCT
CACGCCAACCCTACGCGCACGGAGGTGTCTTCATGCCTCCCCTCCCTTCC
TCACATCGCACTCATTGTCTGATGCCTTCCAACGATTCCCACCACCAACA
CCATACAGGGTCCGTCTCACAACTATGGGGATTGATCTCAAGAGCGGTGG
CCGCCGCACGGGGCACAAGGTGCGTTTGATGCCGTGGAGTTTTGGAAAGG
GGGGGAAGGGAGGGAGGGAGGGAGGGAGAGAGAGAGGGCTGTCTTTCGCG
GACGTGATGTAGAGATTGGAGAAACACGCTGCCCCGTTTGTTGGAGGTCC
CCTGTGCCTTGACAGACAGGTATGATCGCGACGACGTATCTGGGCGTCTA
TAGTGGAGCAGCTGTGGAGGACGAGTCGTAGACAAGCGTTGAGAGGTGGA
CGAGACGGAGGTGATGACGGTTATGAACGATGGATCCCCTGGTTTGAGAG
TTTGATAGTGTGGATGGCGAAGCCAGGCCTCAGCCTTAATATCATGCATT
ACCAAGGATAAACTGTGGTCGTGCAAGTATATAAGTATTCAACACCCTTC
TAAAGGTGCCTGAACCACTCTCAATTGTGTCGTGCACTCCCCCTTCCTCC
CCCCCTCTCCTTCTCTTTCTCCCCTCTCTCTCCAACAGACTCGTACGGCC
CCCAAGTCCGACAACGTCTACCTGAAGCTCTTAGTCAAGCTCTACCGGTT
CCTGGCCCGTCGTACCGACTCCTCCTTCAACGCCGTGGTGCTCAAGCGTT
TGTTTATGTCCAAGACGAACCGTCCCCCTATCGCCATCTCCCGGCTCGTC
CGTCACATGAAGGGGAAGGAGGGGAAGACTGCTGTCATTGTCGGGACCAT
CACCGACGATGCGCGCATGCTCGAGGTGCCCAAGCTGAGCGTTGCTGCCC
TTAAGGTGACGGCCACGGCCCGCGCACGTATCCTCCAGGCAGGCGGCGAG
ATTTTGACGTTTGATGAGCTGGCCCTGCGAGCGCCCAAGGGAACTAATTG
TGTGTTGCTGCGTGGGCCGCACGATCGGGAGGCATTGTCCCACTTTGGGC
ATCGCTCGACGGTGGGTAACGTGCACACGCACGACAATGTCAAGCCGTAC
ACTCGGGCCAAGGGGAGGAAGTTCGAGAAGGCCCGTGGGCGTCGGCGCTC
GACTGGATTCAAGATCTAAGGCGGAAGAGGGCGCGAGGGAGGGAAGGAGG
GCGGGCGGGAGGGCTGAAGGGCTGTTTGGTGCGACGCATTTATTCTGCCT
GCACGTTCCGTGTCGGTGCGGACCACCCGCTTTAGGAGGGGATT
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Coding sequence (CDS) from alignment at chr9:677771..679414+

>NO09G02240.1 ID=NO09G02240.1|Name=NO09G02240.1|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at chr9:677771..679414+ (Nannochloropsis oceanica)
ATGGGGATTGATCTCAAGAGCGGTGGCCGCCGCACGGGGCACAAGACTCG
TACGGCCCCCAAGTCCGACAACGTCTACCTGAAGCTCTTAGTCAAGCTCT
ACCGGTTCCTGGCCCGTCGTACCGACTCCTCCTTCAACGCCGTGGTGCTC
AAGCGTTTGTTTATGTCCAAGACGAACCGTCCCCCTATCGCCATCTCCCG
GCTCGTCCGTCACATGAAGGGGAAGGAGGGGAAGACTGCTGTCATTGTCG
GGACCATCACCGACGATGCGCGCATGCTCGAGGTGCCCAAGCTGAGCGTT
GCTGCCCTTAAGGTGACGGCCACGGCCCGCGCACGTATCCTCCAGGCAGG
CGGCGAGATTTTGACGTTTGATGAGCTGGCCCTGCGAGCGCCCAAGGGAA
CTAATTGTGTGTTGCTGCGTGGGCCGCACGATCGGGAGGCATTGTCCCAC
TTTGGGCATCGCTCGACGGTGGGTAACGTGCACACGCACGACAATGTCAA
GCCGTACACTCGGGCCAAGGGGAGGAAGTTCGAGAAGGCCCGTGGGCGTC
GGCGCTCGACTGGATTCAAGATCTAA
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Synonyms
Publications