NO09G02190.1, NO09G02190.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G02190.1
Unique Name	NO09G02190.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3311
Alignment location	chr9:664804..668198 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:664804..668198 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO09G02190.1 vs.
Match: EWM27583.1 (mitotic spindle-associated mmxd complex subunit mip18 [Nannochloropsis gaditana])

HSP 1 Score: 272.7 bits (696), Expect = 7.700e-70
Identity = 137/158 (86.71%), Postives = 147/158 (93.04%), Query Frame = 0

Query:    1 MKENANPTIYAVASKRREAPSAAEAEGDWDEMARDVFTSEEVFELVRNLNDPEHPLTLEQLKVATLENVRVDDAHSTVRIRFTPTIPHCSMATLIGLCIRVKLLRSLPQRFKVRVEVTPGAHASEAAVNKQLNDKERVAAALENAHLLGVVNKCLEES 159
            MKENANPTIYAV  KRR+ P ++  E +WDE ARD FT+EEVFEL+RNLNDPEHPLTLEQLKVATLENVRVDD+ ST+ IRFTPTIPHCSMATLIGLCIRVKLLRSLPQRFKVRVEV+PGAHASEAAVNKQLNDKERVAAALENAHLLGVVNKCLEE+
Sbjct:    1 MKENANPTIYAVERKRRDHPISSHVETNWDEDARDAFTAEEVFELIRNLNDPEHPLTLEQLKVATLENVRVDDSRSTISIRFTPTIPHCSMATLIGLCIRVKLLRSLPQRFKVRVEVSPGAHASEAAVNKQLNDKERVAAALENAHLLGVVNKCLEET 158

The following BLAST results are available for this feature:

BLAST of NO09G02190.1 vs.

BLAST of NO09G02190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27583.1	7.700e-70	86.71	mitotic spindle-associated mmxd complex subunit mi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G02190	NO09G02190	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO09G02190.1	NO09G02190.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO09G02190.1.cds1	NO09G02190.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G02190.1.cds2	NO09G02190.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:664804..668198-
coding sequence from alignment at chr9:664804..668198-

mRNA sequence

>NO09G02190.1 ID=NO09G02190.1|Name=NO09G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=3311bp
TGACCTCACAACAACGTCTTTATTCTAATCACCAAAGTGTGTGTGCTCTA
TGGCTTCATTCTTTGTTCAGTGCACACACACCTATCTCAGTAACACTTAT
TGTGGTAGCCTTACATGCGTTGCAAGACCTCGATCCCCAACAAGTCCAGA
CACAGGCGCAAGACCTGTGCAGTCAAAGCGCACAAAGTCCTACGCGACTG
CACCAGCCCCGGGGTCGGAGCCGTATTGACGGGGCAGCTTTCATAAAACT
GGTTGAATTTTTGACTGATATCGTACATGTACTCACACAATACATGCGGG
TACAAGTCAGCCTCTACCCTTTGTAACAGTTCGGTGAGTTTGATCAACTG
CCGAGCCAGGTTCAGCTCCGCCGGCTCCTGCAACACCACCTGCGTGGTCG
TAGTCCCCGCCGCCGCCGCTGCCCCGGCATCTTCCCCTCCCATATCTTTG
CGCAAAATACTTTGAATTCGCGCGTAGGCGTAGAGCATGTAGGGGGCAGT
GTTCCCACTTAGGGACAACATTTTTTTGTAGGAAAATTTATAATCCGATT
CGCGATTAAGGGATAAATCGGCGTATTTGACCGCACCAAGGCCGATTGTC
TTGGCACTCTGTTCCAGGTCATCTGGGGGAAGGTAACCTCCCTCCTCAGA
GCGTTTGATGAGATCATCGCGGGCGATGCGCACGGCCTCGTCGAGGAGGT
CCTTAAGCTTGACGGTATCCCCTGCTCGAGTTTTGAACTTCTTCCCGTCC
TCCCCCTGGACTAGGCCGAACGGAACATGTTTCAATTGGACGCTGTCCGG
GACGAACTTGGCTTGACGGGCCACTTGGAAAACCTGATCAAAATGCGAAG
CTTGCCCCGCGTCCGTTACATAAAGGATTCTCTCCGCCTTCTCCTCGAGA
GCTCTGTGTCTCGCCGCCGCCAAATCAGTCGTAGCATACAAGAAACCGCC
ATCCGTTTTTTGGACTATAAACGGCTGTCGTTCTCCTTCTCGGGTCACGT
ATCCATCCAAAAACACCACCCTTGCCCCCTCGCTCTCAACCAACAAACCC
GATTTGTCCAGGTCGCTGATTACGTCGCCCAACATAGGGTTATAAAAACT
TTCCCCCCTCTCCTCCAACCGCACCCCTAGTGCATCATAAATCTTTTGAA
ACTCGCCTCTCGAGAGAGCACACAGCGTCCTCCACGCTTTTAATGTCTCC
TCCTTCCCTCCCTGGAGGTTCACCACCTCCTGTCGACTCTTCAGCTTAAA
TTCCTCGTCCTCATCAAACCTCACCTTCGCCGCCTTATAGAACTCCACCA
AGTCCCCGATCCCCGTCTCCGACTTCCCCTCTTCCGCCAATACCTCGGGG
TGCGCCTCCTTCAAATGCGTAATCAGCATACCAAACTGGGTGCCCCAATC
ACCCACATGGTTCAACCTCATCACGTCATGACCAAGGAACTCCAACACCC
TAGCAACCGTATCACCAATAACCGTACTTCTCAAATGCCCCACATGCATC
TCCTTCGCAATGTTCGGGCTTGAAAAATCGACTACGACTTTCTGTGGTTT
CTGGGGCCGTGCGACACCTAACCTCCCCGACGTGTCCGAAAGCATACCAT
TCACTTTTTGCTCCACAAATGCATTTTTCATCTTGACATTAATAAATCCC
GGTCCGGCAATCTCCAAAGGCTCGCACCACTCCTGCGTTCGTCCTTCCAA
CTCTTCCTTTAGTTTCTCTGCCACCTCTCTCGGCTTGGCTTTTAATCGCT
TCGCCAGGGCCAAGGCAGCATTACACTGGTAATCTCCAAATTCAGGGCGC
GTTGCAGGCGTGACCATCGCATCAGCTCCCTCCGCATCAGCTCCAAAGGC
CGCGTGTAGAGACTCGCGCACTTGAGATGCAAGGGCTTGACGAAAGTTGC
CGTCGTCGAGCGTCGCAGTGGATGGAAAAGAGAAAGGGATGGTGGAGAAT
GAGACGACGCGCGCGCGCTTATGTTGCGGTGAGGAGAAGGTGGAGGAGAA
TGAGGAGGAGGAGGGGGATGAAGAGGAAGAGGAAGAGGAGGAGGTAGGGG
AAGGCATGCCTCGGGGTCGTGATCGGGTGTAAAAACTGTTACAGATTGGT
AAAAAGGCCGTGTATAGACTGCTGGGGATGTGTGAGAGAAAGGAATGAGC
TGCATGTCGAAAGACTCGTTTCCAGCTGTCTGGTGGAGGAGGAGAGTGGC
GCTTGCAGGGAATAGGACAGAAACGATTCGCTCTAGGTCTCTGGCGCGCC
GGCCACCGACGCGACGTGCATTATATGAATATATGTAAACACATAAATAT
TTGTATGTCTTTGAAGTCCATCCCGTGCCGTTATGCCCATTTATTTACCT
GCGCTGTAGCTGCTGCTGCAGGAGTCGTCGTTGACCTCCCCTAGTGCTGC
TGCTTGACCTCCTTGAGGCTGACGCTGCGAAAAGCCGGCTGCCACAGGCA
AGCTGCTGAGTTAGAAAGAGCATCAAGAGTCCGTAAAGGAGACGCATTGC
CTGTTTGGGGTAGTCGGGATGCAAGTGATGAAACAGCGGTTGTGCGAAGC
AAGCAAGGATTCATTTCAGTCAGTCGCCGCGCCCCGTCTCCGGAGTCCGA
GTCGTCCTGTCCTTCTTTCATGCCTTGAAATGCGTCTGTAACCTCAGCGC
ACGCAACGAATATCCTACAGATTTGTCACCTCAGGACCATGAAGGAAAAC
GCCAACCCTACCATCTACGCTGTTGCGAGCAAGCGCAGGGAGGCCCCTTC
CGCTGCGGAGGCCGAGGGTGACTGGGATGAGATGGCCCGCGACGTATTTA
CATCTGAGGAAGTCTTTGAGCTGGTGCGAAACCTGAACGACCCCGAGCAT
CCCTTGACCCTAGAGCAACTGAAAGTCGCCACGCTCGAAAACGTCCGTGT
GGACGATGCTCACTCCACTGTCCGTATCCGATTTACCCCGACCATCCCCC
ATTGTTCGATGGCAACATTGATTGGCTTGTGCATTCGCGTGAAGCTTTTG
CGGTCGTTGCCGCAGCGGTTCAAGGTCCGCGTTGAGGTCACGCCCGGGGC
GCATGCTTCAGAGGCGGCGGTCAACAAGCAATTAAATGACAAAGAAAGGG
TGGCGGCAGCATTGGAAAACGCGCATTTGCTAGGGGTGGTTAATAAGTGC
TTGGAAGAATCGGCGGATGTGGCAGCGGCGACGGCGGTGGGGCATTGAGC
ATACAAGAGACTAGGGAGGAGGAACGAGGGGACCGTGTGCAGTGTATTAT
TCACGTGAGAAAGATATGGATAAAATGAATGAAATCAAGCAAGACTTGTA
AAAGTAATGAC

protein sequence of NO09G02190.1

>NO09G02190.1-protein ID=NO09G02190.1-protein|Name=NO09G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MKENANPTIYAVASKRREAPSAAEAEGDWDEMARDVFTSEEVFELVRNLN
DPEHPLTLEQLKVATLENVRVDDAHSTVRIRFTPTIPHCSMATLIGLCIR
VKLLRSLPQRFKVRVEVTPGAHASEAAVNKQLNDKERVAAALENAHLLGV
VNKCLEESADVAAATAVGH*

mRNA from alignment at chr9:664804..668198-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO09G02190.1 ID=NO09G02190.1|Name=NO09G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=3395bp|location=Sequence derived from alignment at chr9:664804..668198- (Nannochloropsis oceanica)
TGACCTCACAACAACGTCTTTATTCTAATCACCAAAGTGTGTGTGCTCTA
TGGCTTCATTCTTTGTTCAGTGCACACACACCTATCTCAGTAACACTTAT
TGTGGTAGCCTTACATGCGTTGCAAGACCTCGATCCCCAACAAGTCCAGA
CACAGGCGCAAGACCTGTGCAGTCAAAGCGCACAAAGTCCTACGCGACTG
CACCAGCCCCGGGGTCGGAGCCGTATTGACGGGGCAGCTTTCATAAAACT
GGTTGAATTTTTGACTGATATCGTACATGTACTCACACAATACATGCGGG
TACAAGTCAGCCTCTACCCTTTGTAACAGTTCGGTGAGTTTGATCAACTG
CCGAGCCAGGTTCAGCTCCGCCGGCTCCTGCAACACCACCTGCGTGGTCG
TAGTCCCCGCCGCCGCCGCTGCCCCGGCATCTTCCCCTCCCATATCTTTG
CGCAAAATACTTTGAATTCGCGCGTAGGCGTAGAGCATGTAGGGGGCAGT
GTTCCCACTTAGGGACAACATTTTTTTGTAGGAAAATTTATAATCCGATT
CGCGATTAAGGGATAAATCGGCGTATTTGACCGCACCAAGGCCGATTGTC
TTGGCACTCTGTTCCAGGTCATCTGGGGGAAGGTAACCTCCCTCCTCAGA
GCGTTTGATGAGATCATCGCGGGCGATGCGCACGGCCTCGTCGAGGAGGT
CCTTAAGCTTGACGGTATCCCCTGCTCGAGTTTTGAACTTCTTCCCGTCC
TCCCCCTGGACTAGGCCGAACGGAACATGTTTCAATTGGACGCTGTCCGG
GACGAACTTGGCTTGACGGGCCACTTGGAAAACCTGATCAAAATGCGAAG
CTTGCCCCGCGTCCGTTACATAAAGGATTCTCTCCGCCTTCTCCTCGAGA
GCTCTGTGTCTCGCCGCCGCCAAATCAGTCGTAGCATACAAGAAACCGCC
ATCCGTTTTTTGGACTATAAACGGCTGTCGTTCTCCTTCTCGGGTCACGT
ATCCATCCAAAAACACCACCCTTGCCCCCTCGCTCTCAACCAACAAACCC
GATTTGTCCAGGTCGCTGATTACGTCGCCCAACATAGGGTTATAAAAACT
TTCCCCCCTCTCCTCCAACCGCACCCCTAGTGCATCATAAATCTTTTGAA
ACTCGCCTCTCGAGAGAGCACACAGCGTCCTCCACGCTTTTAATGTCTCC
TCCTTCCCTCCCTGGAGGTTCACCACCTCCTGTCGACTCTTCAGCTTAAA
TTCCTCGTCCTCATCAAACCTCACCTTCGCCGCCTTATAGAACTCCACCA
AGTCCCCGATCCCCGTCTCCGACTTCCCCTCTTCCGCCAATACCTCGGGG
TGCGCCTCCTTCAAATGCGTAATCAGCATACCAAACTGGGTGCCCCAATC
ACCCACATGGTTCAACCTCATCACGTCATGACCAAGGAACTCCAACACCC
TAGCAACCGTATCACCAATAACCGTACTTCTCAAATGCCCCACATGCATC
TCCTTCGCAATGTTCGGGCTTGAAAAATCGACTACGACTTTCTGTGGTTT
CTGGGGCCGTGCGACACCTAACCTCCCCGACGTGTCCGAAAGCATACCAT
TCACTTTTTGCTCCACAAATGCATTTTTCATCTTGACATTAATAAATCCC
GGTCCGGCAATCTCCAAAGGCTCGCACCACTCCTGCGTTCGTCCTTCCAA
CTCTTCCTTTAGTTTCTCTGCCACCTCTCTCGGCTTGGCTTTTAATCGCT
TCGCCAGGGCCAAGGCAGCATTACACTGGTAATCTCCAAATTCAGGGCGC
GTTGCAGGCGTGACCATCGCATCAGCTCCCTCCGCATCAGCTCCAAAGGC
CGCGTGTAGAGACTCGCGCACTTGAGATGCAAGGGCTTGACGAAAGTTGC
CGTCGTCGAGCGTCGCAGTGGATGGAAAAGAGAAAGGGATGGTGGAGAAT
GAGACGACGCGCGCGCGCTTATGTTGCGGTGAGGAGAAGGTGGAGGAGAA
TGAGGAGGAGGAGGGGGATGAAGAGGAAGAGGAAGAGGAGGAGGTAGGGG
AAGGCATGCCTCGGGGTCGTGATCGGGTGTAAAAACTGTTACAGATTGGT
AAAAAGGCCGTGTATAGACTGCTGGGGATGTGTGAGAGAAAGGAATGAGC
TGCATGTCGAAAGACTCGTTTCCAGCTGTCTGGTGGAGGAGGAGAGTGGC
GCTTGCAGGGAATAGGACAGAAACGATTCGCTCTAGGTCTCTGGCGCGCC
GGCCACCGACGCGACGTGCATTATATGAATATATGTAAACACATAAATAT
TTGTATGTCTTTGAAGTCCATCCCGTGCCGTTATGCCCATTTATTTACCT
GCGCTGTAGCTGCTGCTGCAGGAGTCGTCGTTGACCTCCCCTAGTGCTGC
TGCTTGACCTCCTTGAGGCTGACGCTGCGAAAAGCCGGCTGCCACAGGCA
AGCTGCTGAGTTAGAAAGAGCATCAAGAGTCCGTAAAGGAGACGCATTGC
CTGTTTGGGGTAGTCGGGATGCAAGTGATGAAACAGCGGTTGTGCGAAGC
AAGCAAGGATTCATTTCAGTCAGTCGCCGCGCCCCGTCTCCGGAGTCCGA
GTCGTCCTGTCCTTCTTTCATGCCTTGAAATGCGTCTGTAACCTCAGCGC
ACGCAACGAATATCCTACAGATTTGTCACCTCAGGACCATGAAGGAAAAC
GCCAACCCTACCATCTACGCTGTTGCGAGCAAGCGCAGGGTAAGTTCGTA
CGAGCTCCTCATTCCTATCGACCTCCTCCCCTCCTCATCCTCATCACTCC
CTACTCTATCTCTACCCCAACAGGAGGCCCCTTCCGCTGCGGAGGCCGAG
GGTGACTGGGATGAGATGGCCCGCGACGTATTTACATCTGAGGAAGTCTT
TGAGCTGGTGCGAAACCTGAACGACCCCGAGCATCCCTTGACCCTAGAGC
AACTGAAAGTCGCCACGCTCGAAAACGTCCGTGTGGACGATGCTCACTCC
ACTGTCCGTATCCGATTTACCCCGACCATCCCCCATTGTTCGATGGCAAC
ATTGATTGGCTTGTGCATTCGCGTGAAGCTTTTGCGGTCGTTGCCGCAGC
GGTTCAAGGTCCGCGTTGAGGTCACGCCCGGGGCGCATGCTTCAGAGGCG
GCGGTCAACAAGCAATTAAATGACAAAGAAAGGGTGGCGGCAGCATTGGA
AAACGCGCATTTGCTAGGGGTGGTTAATAAGTGCTTGGAAGAATCGGCGG
ATGTGGCAGCGGCGACGGCGGTGGGGCATTGAGCATACAAGAGACTAGGG
AGGAGGAACGAGGGGACCGTGTGCAGTGTATTATTCACGTGAGAAAGATA
TGGATAAAATGAATGAAATCAAGCAAGACTTGTAAAAGTAATGAC

Coding sequence (CDS) from alignment at chr9:664804..668198-

>NO09G02190.1 ID=NO09G02190.1|Name=NO09G02190.1|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at chr9:664804..668198- (Nannochloropsis oceanica)
ATGAAGGAAAACGCCAACCCTACCATCTACGCTGTTGCGAGCAAGCGCAG
GGAGGCCCCTTCCGCTGCGGAGGCCGAGGGTGACTGGGATGAGATGGCCC
GCGACGTATTTACATCTGAGGAAGTCTTTGAGCTGGTGCGAAACCTGAAC
GACCCCGAGCATCCCTTGACCCTAGAGCAACTGAAAGTCGCCACGCTCGA
AAACGTCCGTGTGGACGATGCTCACTCCACTGTCCGTATCCGATTTACCC
CGACCATCCCCCATTGTTCGATGGCAACATTGATTGGCTTGTGCATTCGC
GTGAAGCTTTTGCGGTCGTTGCCGCAGCGGTTCAAGGTCCGCGTTGAGGT
CACGCCCGGGGCGCATGCTTCAGAGGCGGCGGTCAACAAGCAATTAAATG
ACAAAGAAAGGGTGGCGGCAGCATTGGAAAACGCGCATTTGCTAGGGGTG
GTTAATAAGTGCTTGGAAGAATCGGCGGATGTGGCAGCGGCGACGGCGGT
GGGGCATTGA

Synonyms

Publications