NO09G02180.1, NO09G02180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02180.1
Unique NameNO09G02180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1828
Alignment locationchr9:662730..664803 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:662730..664803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02180.1 vs.
Match: EWM27546.1 (hypothetical protein Naga_100015g54 [Nannochloropsis gaditana])

HSP 1 Score: 251.5 bits (641), Expect = 5.300e-63
Identity = 172/461 (37.31%), Postives = 237/461 (51.41%), Query Frame = 0 
Query:    6 PNKSLFSLSISSSALLHRSPSGRPTTTTTTSATAQEISMPPPTTA----------IVAEQQAQQKQQQQQQAFWGNLKIEIEPPYEGKPPEWHTEQSDSTSIPAHLSSSSSHSGSETDLSHLEGSIRDNNSPTM-PEPFIAKSLAITLAGTLVLVGIAQLALQLMLSVKIHFQSAWWGGAFSVLVGSLGLATRWECTRMTHQSLVVIGILLNAVAAVLETRASSFFHGEELFCGPPERETGGVANLSVGEWCVLDLNLDPQKRTKGIMCACIIPGRDPESKEACVAFRGWEGLREGEVCDASAEHVGRIMNLSVALCWAMSTICLLTCLVRIGVRCHQRKHLSFCRVNS-------WVSKGLGRKKRRWGPTVVAFDRRASSRSSSSDESHSSRNSIRDSGLAAQDSGVRTLMEAGGTQARHVQLQQQQQQQQQPGGERKGKGMGKRKDGLTDPYYMRDQP 449
            P   L S + SSS      P   P+ +   S  A  I  P  T +          +  +    QK+  QQQAFWGNL+IEIEPPY+GKPPEWHTEQSDSTSIPA+LS S S    ETDLS +EG   D   P+  PEP   + +   ++  L+  G AQ +LQ+ + +++HF S+WW GAFS L+G++GL++RWEC RM  + L  +G+LLNAVAAV++ R +    G E+FCGPP + TGG +++S+ +WC L+      +    + CACIIPG  P S +AC+AF G      G  C ASA  + R ++ S  LCWA++TICL   L R+ + C     L   R +S       W +K      R+    VVA     +      D +H              + G R    A G                + GG     G   ++D + D YY+RD P
Sbjct:    9 PRAPLSSSAASSSPGPQILPPPPPSPSFARSRDATRIHNPVRTHSFSIQRTIPDKMAGDPSKHQKEMHQQQAFWGNLRIEIEPPYQGKPPEWHTEQSDSTSIPAYLSESPS----ETDLSQIEGG--DEAFPSRGPEPPAVRMVTTCISSALLATGGAQSSLQIAMFIQLHFISSWWSGAFSALIGAVGLSSRWECPRMAFRILTFVGVLLNAVAAVIDARIAHVLRGSEVFCGPPSKATGGASSVSLQDWCALE-----PEDLAVLSCACIIPGESPGSSKACLAFHG-RAPEAGSQCYASASLLQRFLSASTGLCWALATICLCAYLFRLALTCRYCLILVLSRSSSFRLVPKRWRAKSAKSADRK----VVAGSETGAEGKKREDPNHPQIT------YEKMEEGERAPPRAAG----------------RDGGNLARHGSRGQRD-VRDAYYLRDAP 430
The following BLAST results are available for this feature:
BLAST of NO09G02180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27546.15.300e-6337.31hypothetical protein Naga_100015g54 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02180NO09G02180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02180.1NO09G02180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02180.1.cds1NO09G02180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02180.1.cds2NO09G02180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02180.1 ID=NO09G02180.1|Name=NO09G02180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1828bp
GATGGGCCTCATGGCATGGTGCCTGCACTCGACTTTGCACACGACTTTAC
ACACGACTCTTGAAATAACTACCCCCAGCACGGCCCACCCACTCCATTTA
CAGGGGCATACTTTGGTTGCCGTCGTTACCACGGCGTGAGGCCTCCCTGA
CATGGTCGACTGCAACCCCAACAAGTCTCTGTTTTCCCTCTCAATCTCAT
CTTCTGCCCTCCTGCACCGCTCCCCCTCCGGACGTCCCACTACCACCACC
ACGACGAGCGCTACAGCACAGGAGATTTCTATGCCGCCTCCAACCACTGC
CATCGTCGCGGAACAGCAAGCACAGCAGAAGCAGCAACAACAGCAGCAAG
CCTTTTGGGGAAACCTGAAAATCGAGATTGAGCCCCCATACGAAGGAAAA
CCCCCGGAATGGCACACGGAGCAAAGCGACTCCACATCTATCCCCGCCCA
TCTCTCTTCCAGTAGCTCTCACTCCGGTTCCGAGACTGATCTCTCCCACT
TAGAAGGCAGCATTAGAGACAACAATTCTCCCACAATGCCTGAGCCTTTC
ATTGCCAAAAGTTTAGCTATTACACTGGCCGGCACGTTAGTGTTGGTAGG
AATAGCACAGCTTGCGTTACAGCTCATGTTGTCAGTCAAGATACATTTTC
AATCGGCTTGGTGGGGGGGAGCGTTCTCAGTGCTGGTTGGGAGTTTGGGA
TTGGCGACGCGGTGGGAGTGCACGAGGATGACGCATCAGTCGTTGGTAGT
GATAGGTATTTTGCTAAATGCTGTTGCAGCGGTGCTGGAGACGAGGGCGA
GCTCGTTTTTTCATGGTGAGGAGTTATTTTGTGGTCCTCCTGAGAGAGAG
ACAGGGGGAGTCGCTAATCTGAGTGTGGGCGAATGGTGTGTTTTAGATTT
GAATTTGGATCCCCAAAAACGAACAAAAGGCATAATGTGTGCGTGTATCA
TCCCGGGAAGGGATCCGGAATCGAAGGAGGCGTGTGTAGCGTTTCGTGGT
TGGGAAGGCCTAAGGGAGGGAGAGGTGTGTGATGCATCTGCGGAGCATGT
GGGGAGGATAATGAATCTGAGCGTAGCCTTGTGTTGGGCCATGTCAACGA
TATGCTTATTGACGTGCCTGGTACGGATAGGGGTAAGATGTCATCAGAGA
AAGCATTTGTCTTTCTGTCGTGTGAATTCGTGGGTATCAAAGGGGTTGGG
GAGAAAGAAGAGGAGGTGGGGACCGACGGTCGTGGCATTTGATCGACGAG
CGAGCAGCCGCAGCAGCAGCAGTGACGAAAGCCACAGCAGCCGCAACAGT
ATCCGTGATAGCGGCCTTGCTGCACAGGATAGTGGTGTACGGACGTTGAT
GGAAGCGGGAGGGACGCAAGCGCGACATGTACAGTTGCAACAGCAGCAGC
AGCAACAGCAGCAGCCCGGGGGGGAAAGAAAGGGTAAGGGGATGGGGAAA
AGGAAGGATGGTTTGACTGACCCTTATTACATGCGAGATCAACCGAAAAA
AAGGGAAGGAAAAGGAGGAGGAAGGGGGATAAGAGGGGAGGTGGAAATGG
GAGAGGAGGTGGCGGGAGGAGGAGGAGGAAGAGGAGGAGTAGGAAGAGGA
GGAGGCTTTCTGCCTTCTCCTGTAAATTAGAGTAAAATTGGCTTATGTAG
GCACGATATGAGTATGAGTGTGCGTGTGCATGTACTTTTGTTCAGATAGA
CTTTATCCGGAGACTAATTATTGGATGCATAGGGAAATCAAACTGAAGTT
GCCAACAGCCCCCCAGCTACCACCGGCAGCGGCAGCAGCAGCATCAGCAA
CGACAACAACAATAAAAAATGATTGTAA
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protein sequence of NO09G02180.1

>NO09G02180.1-protein ID=NO09G02180.1-protein|Name=NO09G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MVDCNPNKSLFSLSISSSALLHRSPSGRPTTTTTTSATAQEISMPPPTTA
IVAEQQAQQKQQQQQQAFWGNLKIEIEPPYEGKPPEWHTEQSDSTSIPAH
LSSSSSHSGSETDLSHLEGSIRDNNSPTMPEPFIAKSLAITLAGTLVLVG
IAQLALQLMLSVKIHFQSAWWGGAFSVLVGSLGLATRWECTRMTHQSLVV
IGILLNAVAAVLETRASSFFHGEELFCGPPERETGGVANLSVGEWCVLDL
NLDPQKRTKGIMCACIIPGRDPESKEACVAFRGWEGLREGEVCDASAEHV
GRIMNLSVALCWAMSTICLLTCLVRIGVRCHQRKHLSFCRVNSWVSKGLG
RKKRRWGPTVVAFDRRASSRSSSSDESHSSRNSIRDSGLAAQDSGVRTLM
EAGGTQARHVQLQQQQQQQQQPGGERKGKGMGKRKDGLTDPYYMRDQPKK
REGKGGGRGIRGEVEMGEEVAGGGGGRGGVGRGGGFLPSPVN*
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mRNA from alignment at chr9:662730..664803+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02180.1 ID=NO09G02180.1|Name=NO09G02180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2074bp|location=Sequence derived from alignment at chr9:662730..664803+ (Nannochloropsis oceanica)
GATGGGCCTCATGGCATGGTGCCTGCACTCGACTTTGCACACGACTTTAC
ACACGACTCTTGAAATAACTACCCCCAGCACGGCCCACCCACTCCATTTA
CAGGGGCATACTTTGGTTGCCGTCGTTACCACGGCGTGAGGCCTCCCTGA
CATGGTCGACTGCAACCCCAACAAGTCTCTGTTTTCCCTCTCAATCTCAT
CTTCTGCCCTCCTGCACCGCTCCCCCTCCGGACGTCCCACTACCACCACC
ACGACGAGCGCTACAGCACAGGAGATTTCTATGCCGCCTCCAACCACTGC
CATCGTCGCGGAACAGCAAGCACAGCAGAAGCAGCAACAACAGCAGCAAG
CCTTTTGGGGAAACCTGAAAATCGAGGTAAGCCAATGTCTTGATGGGGAG
GCGCAACAAGAGAGACACAGACATGAAATTCTTGCGCTGACATCTTCTTC
ATGACAAGCGTCTGGATTTTCTCCTCCTTCCATTTAAATCCCTGCTCCTC
CACGCCTCCCCCCCACTCCCTCCTCCCACCAACCACCACTCTTGGGCACA
ACTCCCCCACCAGCCCACCCCATTCTCCCTTTTTCCCATTCCCTTGCCAA
AATACAAAATCCAACCCATCAGATTGAGCCCCCATACGAAGGAAAACCCC
CGGAATGGCACACGGAGCAAAGCGACTCCACATCTATCCCCGCCCATCTC
TCTTCCAGTAGCTCTCACTCCGGTTCCGAGACTGATCTCTCCCACTTAGA
AGGCAGCATTAGAGACAACAATTCTCCCACAATGCCTGAGCCTTTCATTG
CCAAAAGTTTAGCTATTACACTGGCCGGCACGTTAGTGTTGGTAGGAATA
GCACAGCTTGCGTTACAGCTCATGTTGTCAGTCAAGATACATTTTCAATC
GGCTTGGTGGGGGGGAGCGTTCTCAGTGCTGGTTGGGAGTTTGGGATTGG
CGACGCGGTGGGAGTGCACGAGGATGACGCATCAGTCGTTGGTAGTGATA
GGTATTTTGCTAAATGCTGTTGCAGCGGTGCTGGAGACGAGGGCGAGCTC
GTTTTTTCATGGTGAGGAGTTATTTTGTGGTCCTCCTGAGAGAGAGACAG
GGGGAGTCGCTAATCTGAGTGTGGGCGAATGGTGTGTTTTAGATTTGAAT
TTGGATCCCCAAAAACGAACAAAAGGCATAATGTGTGCGTGTATCATCCC
GGGAAGGGATCCGGAATCGAAGGAGGCGTGTGTAGCGTTTCGTGGTTGGG
AAGGCCTAAGGGAGGGAGAGGTGTGTGATGCATCTGCGGAGCATGTGGGG
AGGATAATGAATCTGAGCGTAGCCTTGTGTTGGGCCATGTCAACGATATG
CTTATTGACGTGCCTGGTACGGATAGGGGTAAGATGTCATCAGAGAAAGC
ATTTGTCTTTCTGTCGTGTGAATTCGTGGGTATCAAAGGGGTTGGGGAGA
AAGAAGAGGAGGTGGGGACCGACGGTCGTGGCATTTGATCGACGAGCGAG
CAGCCGCAGCAGCAGCAGTGACGAAAGCCACAGCAGCCGCAACAGTATCC
GTGATAGCGGCCTTGCTGCACAGGATAGTGGTGTACGGACGTTGATGGAA
GCGGGAGGGACGCAAGCGCGACATGTACAGTTGCAACAGCAGCAGCAGCA
ACAGCAGCAGCCCGGGGGGGAAAGAAAGGGTAAGGGGATGGGGAAAAGGA
AGGATGGTTTGACTGACCCTTATTACATGCGAGATCAACCGAAAAAAAGG
GAAGGAAAAGGAGGAGGAAGGGGGATAAGAGGGGAGGTGGAAATGGGAGA
GGAGGTGGCGGGAGGAGGAGGAGGAAGAGGAGGAGTAGGAAGAGGAGGAG
GCTTTCTGCCTTCTCCTGTAAATTAGAGTAAAATTGGCTTATGTAGGCAC
GATATGAGTATGAGTGTGCGTGTGCATGTACTTTTGTTCAGATAGACTTT
ATCCGGAGACTAATTATTGGATGCATAGGGAAATCAAACTGAAGTTGCCA
ACAGCCCCCCAGCTACCACCGGCAGCGGCAGCAGCAGCATCAGCAACGAC
AACAACAATAAAAAATGATTGTAA
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Coding sequence (CDS) from alignment at chr9:662730..664803+

>NO09G02180.1 ID=NO09G02180.1|Name=NO09G02180.1|organism=Nannochloropsis oceanica|type=CDS|length=1479bp|location=Sequence derived from alignment at chr9:662730..664803+ (Nannochloropsis oceanica)
ATGGTCGACTGCAACCCCAACAAGTCTCTGTTTTCCCTCTCAATCTCATC
TTCTGCCCTCCTGCACCGCTCCCCCTCCGGACGTCCCACTACCACCACCA
CGACGAGCGCTACAGCACAGGAGATTTCTATGCCGCCTCCAACCACTGCC
ATCGTCGCGGAACAGCAAGCACAGCAGAAGCAGCAACAACAGCAGCAAGC
CTTTTGGGGAAACCTGAAAATCGAGATTGAGCCCCCATACGAAGGAAAAC
CCCCGGAATGGCACACGGAGCAAAGCGACTCCACATCTATCCCCGCCCAT
CTCTCTTCCAGTAGCTCTCACTCCGGTTCCGAGACTGATCTCTCCCACTT
AGAAGGCAGCATTAGAGACAACAATTCTCCCACAATGCCTGAGCCTTTCA
TTGCCAAAAGTTTAGCTATTACACTGGCCGGCACGTTAGTGTTGGTAGGA
ATAGCACAGCTTGCGTTACAGCTCATGTTGTCAGTCAAGATACATTTTCA
ATCGGCTTGGTGGGGGGGAGCGTTCTCAGTGCTGGTTGGGAGTTTGGGAT
TGGCGACGCGGTGGGAGTGCACGAGGATGACGCATCAGTCGTTGGTAGTG
ATAGGTATTTTGCTAAATGCTGTTGCAGCGGTGCTGGAGACGAGGGCGAG
CTCGTTTTTTCATGGTGAGGAGTTATTTTGTGGTCCTCCTGAGAGAGAGA
CAGGGGGAGTCGCTAATCTGAGTGTGGGCGAATGGTGTGTTTTAGATTTG
AATTTGGATCCCCAAAAACGAACAAAAGGCATAATGTGTGCGTGTATCAT
CCCGGGAAGGGATCCGGAATCGAAGGAGGCGTGTGTAGCGTTTCGTGGTT
GGGAAGGCCTAAGGGAGGGAGAGGTGTGTGATGCATCTGCGGAGCATGTG
GGGAGGATAATGAATCTGAGCGTAGCCTTGTGTTGGGCCATGTCAACGAT
ATGCTTATTGACGTGCCTGGTACGGATAGGGGTAAGATGTCATCAGAGAA
AGCATTTGTCTTTCTGTCGTGTGAATTCGTGGGTATCAAAGGGGTTGGGG
AGAAAGAAGAGGAGGTGGGGACCGACGGTCGTGGCATTTGATCGACGAGC
GAGCAGCCGCAGCAGCAGCAGTGACGAAAGCCACAGCAGCCGCAACAGTA
TCCGTGATAGCGGCCTTGCTGCACAGGATAGTGGTGTACGGACGTTGATG
GAAGCGGGAGGGACGCAAGCGCGACATGTACAGTTGCAACAGCAGCAGCA
GCAACAGCAGCAGCCCGGGGGGGAAAGAAAGGGTAAGGGGATGGGGAAAA
GGAAGGATGGTTTGACTGACCCTTATTACATGCGAGATCAACCGAAAAAA
AGGGAAGGAAAAGGAGGAGGAAGGGGGATAAGAGGGGAGGTGGAAATGGG
AGAGGAGGTGGCGGGAGGAGGAGGAGGAAGAGGAGGAGTAGGAAGAGGAG
GAGGCTTTCTGCCTTCTCCTGTAAATTAG
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Synonyms
Publications