NO09G02170.1, NO09G02170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02170.1
Unique NameNO09G02170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length871
Alignment locationchr9:661749..662619 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:661749..662619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G02170.1 vs.
Match: EWM27536.1 (methyltransferase type 11 [Nannochloropsis gaditana])

HSP 1 Score: 354.0 bits (907), Expect = 4.200e-94
Identity = 167/283 (59.01%), Postives = 206/283 (72.79%), Query Frame = 0
Query:    1 MTSKQEAHYGDVAQHYNQAWFYEDGTDYQRWLVHSLMQRLQTTPSMRVVDVGGGTGNFSAALHKECMLGQRILCVDPSAPLLVQCQKHAESVEPLLADGLGFVA--EQNQVYDRMLLKEVIHHFPPADLGTLFAGVFRQIRPGGRVIIMTRPHDSSHYPFFPAAHQTWASAQLHESIYAKAMEKEGFSVTLDHADYPVDMPLSRWLNMVNGRFWSNLHGFSEGEMKGGLKKIE-DMVMEGKERGIWVQKDRKDEEGEV---------TITFPDRVVFITGVKA 272
            M S QEAHY DVA+ YN+AWFYEDGTDYQ+WLV SL  RLQ  P  RVVD+GGGTGNFSAA ++EC L + +LCVDPS  LL Q Q+H   VEPLLADGL FV     NQ YDR+L KEV+HHFP  +LG +FAG F+Q+RPGGR+++MTRPHDS+HYPFF AAHQTW + Q  E+IYA+ +   GF V++DHADY V MPLSRWL+MV  RFWS LHGFS+ EM  GLK+I+   + + +       +++ D +GE           I+FPDR+VFITG+KA
Sbjct:   16 MVSNQEAHYDDVAKEYNKAWFYEDGTDYQQWLVRSLQTRLQAAPDSRVVDMGGGTGNFSAAFYRECELEEPVLCVDPSRALLAQAQRHVSEVEPLLADGLSFVGMTAYNQAYDRILFKEVVHHFPRDELGVVFAGTFQQLRPGGRLVVMTRPHDSTHYPFFHAAHQTWKAVQQDETIYAQELRTAGFDVSVDHADYTVTMPLSRWLSMVESRFWSTLHGFSDAEMAEGLKEIKARFLRDSQSASSTTHREQGDHKGEALRCEERNDPPISFPDRLVFITGLKA 298          
The following BLAST results are available for this feature:
BLAST of NO09G02170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27536.14.200e-9459.01methyltransferase type 11 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02170NO09G02170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02170.1NO09G02170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02170.1.cds1NO09G02170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02170.1 ID=NO09G02170.1|Name=NO09G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=871bp
ACAGGCATGACCTCAAAACAAGAAGCCCACTACGGCGACGTTGCCCAACA
CTACAACCAGGCGTGGTTCTACGAAGATGGCACTGACTACCAACGCTGGC
TTGTGCACAGTCTGATGCAGCGTCTCCAAACGACTCCCAGTATGCGGGTG
GTGGATGTGGGAGGCGGCACAGGCAACTTTAGCGCAGCCTTGCATAAGGA
GTGTATGTTGGGCCAACGTATTCTATGCGTCGATCCGTCGGCGCCCTTGT
TGGTCCAATGCCAGAAGCACGCCGAGTCGGTGGAGCCGCTATTGGCGGAT
GGTCTGGGATTCGTAGCCGAACAAAACCAAGTCTACGACCGGATGCTGCT
CAAAGAAGTAATCCACCATTTTCCACCCGCCGACCTAGGCACCTTATTTG
CAGGTGTTTTCCGACAAATACGTCCGGGGGGGCGCGTTATTATTATGACA
CGCCCCCACGACTCGTCGCATTATCCCTTCTTCCCTGCCGCACACCAGAC
CTGGGCATCTGCCCAACTCCACGAAAGCATCTACGCAAAAGCGATGGAAA
AGGAAGGATTTTCCGTCACGCTAGACCACGCAGATTATCCCGTAGACATG
CCCTTGTCTCGCTGGTTGAATATGGTGAATGGGCGCTTTTGGTCGAACCT
GCATGGGTTTTCTGAGGGGGAGATGAAAGGGGGATTAAAGAAAATTGAGG
ATATGGTTATGGAGGGGAAAGAGAGAGGGATTTGGGTACAGAAGGATAGA
AAGGACGAGGAGGGTGAGGTCACGATAACCTTCCCAGATCGAGTGGTGTT
CATCACGGGTGTTAAGGCATAGGTTGGAGGGGGAAAGGCAGACGAAAAAC
AAAAACAAAATTTAGTGGTCT
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protein sequence of NO09G02170.1

>NO09G02170.1-protein ID=NO09G02170.1-protein|Name=NO09G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MTSKQEAHYGDVAQHYNQAWFYEDGTDYQRWLVHSLMQRLQTTPSMRVVD
VGGGTGNFSAALHKECMLGQRILCVDPSAPLLVQCQKHAESVEPLLADGL
GFVAEQNQVYDRMLLKEVIHHFPPADLGTLFAGVFRQIRPGGRVIIMTRP
HDSSHYPFFPAAHQTWASAQLHESIYAKAMEKEGFSVTLDHADYPVDMPL
SRWLNMVNGRFWSNLHGFSEGEMKGGLKKIEDMVMEGKERGIWVQKDRKD
EEGEVTITFPDRVVFITGVKA*
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mRNA from alignment at chr9:661749..662619-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02170.1 ID=NO09G02170.1|Name=NO09G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=871bp|location=Sequence derived from alignment at chr9:661749..662619- (Nannochloropsis oceanica)
ACAGGCATGACCTCAAAACAAGAAGCCCACTACGGCGACGTTGCCCAACA CTACAACCAGGCGTGGTTCTACGAAGATGGCACTGACTACCAACGCTGGC TTGTGCACAGTCTGATGCAGCGTCTCCAAACGACTCCCAGTATGCGGGTG GTGGATGTGGGAGGCGGCACAGGCAACTTTAGCGCAGCCTTGCATAAGGA GTGTATGTTGGGCCAACGTATTCTATGCGTCGATCCGTCGGCGCCCTTGT TGGTCCAATGCCAGAAGCACGCCGAGTCGGTGGAGCCGCTATTGGCGGAT GGTCTGGGATTCGTAGCCGAACAAAACCAAGTCTACGACCGGATGCTGCT CAAAGAAGTAATCCACCATTTTCCACCCGCCGACCTAGGCACCTTATTTG CAGGTGTTTTCCGACAAATACGTCCGGGGGGGCGCGTTATTATTATGACA CGCCCCCACGACTCGTCGCATTATCCCTTCTTCCCTGCCGCACACCAGAC CTGGGCATCTGCCCAACTCCACGAAAGCATCTACGCAAAAGCGATGGAAA AGGAAGGATTTTCCGTCACGCTAGACCACGCAGATTATCCCGTAGACATG CCCTTGTCTCGCTGGTTGAATATGGTGAATGGGCGCTTTTGGTCGAACCT GCATGGGTTTTCTGAGGGGGAGATGAAAGGGGGATTAAAGAAAATTGAGG ATATGGTTATGGAGGGGAAAGAGAGAGGGATTTGGGTACAGAAGGATAGA AAGGACGAGGAGGGTGAGGTCACGATAACCTTCCCAGATCGAGTGGTGTT CATCACGGGTGTTAAGGCATAGGTTGGAGGGGGAAAGGCAGACGAAAAAC AAAAACAAAATTTAGTGGTCT
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Coding sequence (CDS) from alignment at chr9:661749..662619-

>NO09G02170.1 ID=NO09G02170.1|Name=NO09G02170.1|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at chr9:661749..662619- (Nannochloropsis oceanica)
ATGACCTCAAAACAAGAAGCCCACTACGGCGACGTTGCCCAACACTACAA
CCAGGCGTGGTTCTACGAAGATGGCACTGACTACCAACGCTGGCTTGTGC
ACAGTCTGATGCAGCGTCTCCAAACGACTCCCAGTATGCGGGTGGTGGAT
GTGGGAGGCGGCACAGGCAACTTTAGCGCAGCCTTGCATAAGGAGTGTAT
GTTGGGCCAACGTATTCTATGCGTCGATCCGTCGGCGCCCTTGTTGGTCC
AATGCCAGAAGCACGCCGAGTCGGTGGAGCCGCTATTGGCGGATGGTCTG
GGATTCGTAGCCGAACAAAACCAAGTCTACGACCGGATGCTGCTCAAAGA
AGTAATCCACCATTTTCCACCCGCCGACCTAGGCACCTTATTTGCAGGTG
TTTTCCGACAAATACGTCCGGGGGGGCGCGTTATTATTATGACACGCCCC
CACGACTCGTCGCATTATCCCTTCTTCCCTGCCGCACACCAGACCTGGGC
ATCTGCCCAACTCCACGAAAGCATCTACGCAAAAGCGATGGAAAAGGAAG
GATTTTCCGTCACGCTAGACCACGCAGATTATCCCGTAGACATGCCCTTG
TCTCGCTGGTTGAATATGGTGAATGGGCGCTTTTGGTCGAACCTGCATGG
GTTTTCTGAGGGGGAGATGAAAGGGGGATTAAAGAAAATTGAGGATATGG
TTATGGAGGGGAAAGAGAGAGGGATTTGGGTACAGAAGGATAGAAAGGAC
GAGGAGGGTGAGGTCACGATAACCTTCCCAGATCGAGTGGTGTTCATCAC
GGGTGTTAAGGCATAG
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Synonyms
Publications