NO09G02150.1, NO09G02150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02150.1
Unique NameNO09G02150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1299
Alignment locationchr9:657976..659494 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:657976..659494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02150.1 vs.
Match: EWM27591.1 (solute carrier family 25 member 42 [Nannochloropsis gaditana])

HSP 1 Score: 549.7 bits (1415), Expect = 8.300e-153
Identity = 306/435 (70.34%), Postives = 338/435 (77.70%), Query Frame = 0 
Query:    1 MVFPAQPPPPRELPRRDTSTVLRAIETVDEQPAQMPMDSSSHFETAVITVKSIVAGGLAGMVAKSVVAPVDRIKILFQVSSEEFCLRKVLQILARIYHDEGFSGLWKGNSATMLRVFPYAGIQFMTFDAVKANLLKLKEGGTHGGQLTNIESLFAGSFAGFVSCSFTYPLDFARARLAVEGVQGAHYLRPSVPVVVGGTAGAAVAGASSTGGGAVRGGGGRGGEKGGKGAGGKGKGAINHNVFDIFRAAYREGGILSLYRGITPTLLGILPYAGIAFTINDKANHQIHRLTGHEPTTLQKLGCGAFAGLAAQSATYPLDVVRRRMQTAGVMSGGGGC--GD-KGGDGGKGGVKDGNAHNVRPPLRPTASPGHDPHTASMRQVLMEVYKQEGMKGLFKGLSMNWIKGPVALGISFTTFDFLKRYLNVQQPEKKMPI 433
            M  PA      + PRRDT  +  A+E V+EQP  MP+ S++HFE A+ T KSI+AGGLAGMVAKSVVAPVDRIKILFQVSSEEFCLRKVL I+ RIYH+EGF GLWKGNSATMLRVFPYAGIQFMTFD VKA +LK+  G   GGQLTN+ESLFAGSFAGFVSC+ TYPLDFARARLAVEG QGA YLR ++P   GG        ++S+   AV+ G   GG+ G KG    G G  +H V D+F+AAYREGGILSLYRG+TPTLLGILPYAGIAFTINDKANHQIHRLTG EP+TLQKLGCGAFAGLAAQSATYPLDVVRRRMQTAGV S       GD +G + G   V  G       PLR T S G+DP +ASMR VL EVY QEG+KGLFKGLSMNWIKGPVALGISFTTFDFLKR LNVQQP KK PI
Sbjct:    1 MELPAPSTKRFDAPRRDTGNMRVAVENVEEQPVHMPLGSATHFENAISTAKSIMAGGLAGMVAKSVVAPVDRIKILFQVSSEEFCLRKVLFIMRRIYHEEGFGGLWKGNSATMLRVFPYAGIQFMTFDTVKAYILKM-NGEVEGGQLTNLESLFAGSFAGFVSCTCTYPLDFARARLAVEGAQGAQYLRRNMP--AGGRGVGVERASTSSVSHAVQDGKKTGGKLGSKGVLANGAGRAHHTVLDVFKAAYREGGILSLYRGVTPTLLGILPYAGIAFTINDKANHQIHRLTGEEPSTLQKLGCGAFAGLAAQSATYPLDVVRRRMQTAGVKSPEMPVQRGDVEGREKGYAAVGAGEPRRGHVPLRATPSSGYDPLSASMRAVLREVYTQEGVKGLFKGLSMNWIKGPVALGISFTTFDFLKRLLNVQQPGKKAPI 432
The following BLAST results are available for this feature:
BLAST of NO09G02150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27591.18.300e-15370.34solute carrier family 25 member 42 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02150NO09G02150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02150.1NO09G02150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02150.1.cds1NO09G02150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02150.1.cds2NO09G02150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02150.1 ID=NO09G02150.1|Name=NO09G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp
ATGGTCTTCCCCGCGCAGCCGCCCCCGCCACGAGAATTGCCACGGAGAGA
CACGAGCACTGTGTTAAGGGCGATAGAAACGGTAGATGAGCAGCCGGCGC
AAATGCCCATGGACTCAAGCTCGCATTTTGAGACGGCCGTCATCACTGTC
AAGTCCATCGTCGCAGGAGGGCTCGCTGGTATGGTCGCTAAAAGCGTCGT
CGCCCCTGTAGACCGCATCAAGATCCTCTTTCAGGTCTCCTCAGAAGAGT
TTTGCCTGCGAAAAGTCCTTCAAATCCTCGCAAGGATCTACCATGATGAG
GGGTTTTCCGGCCTGTGGAAAGGAAACAGTGCTACGATGCTCCGTGTTTT
CCCCTATGCCGGGATTCAGTTCATGACCTTTGATGCAGTCAAGGCAAATC
TTCTGAAACTGAAAGAGGGTGGGACCCATGGAGGACAGTTGACGAACATA
GAGAGTTTGTTCGCGGGGTCGTTTGCGGGGTTTGTCTCGTGTTCCTTCAC
TTACCCCCTGGACTTTGCACGGGCTCGCTTGGCGGTGGAGGGGGTGCAAG
GCGCGCATTATTTGAGACCATCCGTACCGGTGGTGGTGGGAGGAACGGCA
GGAGCAGCTGTTGCGGGGGCGTCGTCGACGGGAGGAGGAGCAGTGAGAGG
AGGAGGAGGAAGAGGAGGAGAAAAAGGAGGAAAGGGAGCAGGAGGTAAAG
GGAAGGGAGCGATAAATCATAACGTCTTTGACATCTTTCGGGCCGCGTAC
AGGGAAGGGGGAATTTTGTCATTATATAGAGGAATAACGCCGACGTTGCT
GGGCATTTTGCCGTATGCCGGGATTGCCTTTACGATCAATGACAAGGCCA
ACCATCAGATCCATCGATTAACAGGCCACGAGCCGACGACGTTGCAAAAA
CTGGGTTGTGGCGCCTTTGCGGGTTTAGCGGCCCAGTCGGCGACATATCC
TTTGGATGTGGTTCGACGACGGATGCAGACAGCGGGGGTGATGTCAGGTG
GTGGTGGTTGTGGTGATAAAGGAGGAGACGGAGGAAAAGGAGGAGTGAAG
GATGGGAATGCACACAATGTTCGACCACCATTGCGACCAACAGCATCTCC
GGGGCATGATCCGCACACGGCAAGCATGCGACAGGTATTGATGGAGGTGT
ACAAGCAGGAAGGGATGAAGGGCTTGTTTAAGGGGTTGTCGATGAATTGG
ATCAAGGGCCCCGTGGCGTTGGGCATTAGTTTCACCACCTTTGATTTTTT
GAAGCGGTATCTCAATGTACAGCAACCAGAGAAGAAGATGCCGATATAG
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protein sequence of NO09G02150.1

>NO09G02150.1-protein ID=NO09G02150.1-protein|Name=NO09G02150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MVFPAQPPPPRELPRRDTSTVLRAIETVDEQPAQMPMDSSSHFETAVITV
KSIVAGGLAGMVAKSVVAPVDRIKILFQVSSEEFCLRKVLQILARIYHDE
GFSGLWKGNSATMLRVFPYAGIQFMTFDAVKANLLKLKEGGTHGGQLTNI
ESLFAGSFAGFVSCSFTYPLDFARARLAVEGVQGAHYLRPSVPVVVGGTA
GAAVAGASSTGGGAVRGGGGRGGEKGGKGAGGKGKGAINHNVFDIFRAAY
REGGILSLYRGITPTLLGILPYAGIAFTINDKANHQIHRLTGHEPTTLQK
LGCGAFAGLAAQSATYPLDVVRRRMQTAGVMSGGGGCGDKGGDGGKGGVK
DGNAHNVRPPLRPTASPGHDPHTASMRQVLMEVYKQEGMKGLFKGLSMNW
IKGPVALGISFTTFDFLKRYLNVQQPEKKMPI*
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mRNA from alignment at chr9:657976..659494+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02150.1 ID=NO09G02150.1|Name=NO09G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1519bp|location=Sequence derived from alignment at chr9:657976..659494+ (Nannochloropsis oceanica)
ATGGTCTTCCCCGCGCAGCCGCCCCCGCCACGAGAATTGCCACGGAGAGA
CACGAGCACTGTGTTAAGGGCGATAGAAACGGTAGATGAGCAGCCGGCGC
AAATGCCCATGGACTCAAGCTCGCATTTTGAGACGGCCGTCATCACTGTC
AAGTCCATCGTCGCAGGTGGGTTCATGAGAGGGGTGAGGTGGGCATGCCT
GGAGCGTGGTGATGATGGCTGGTATGGCAATGCTAGTTCCCCACTTTCTC
TTTATCTCAGAGTTTTTCGCTGGCGAAACGATTGTCCTGCAACGATACGC
CCATCAGCGCTCTTAAATGTCATATTCTCATGCACTTGCCCGCTCACCAC
TTTGGTCCGATCCCTTCCTTCGTTCATCAAAATCAGGAGGGCTCGCTGGT
ATGGTCGCTAAAAGCGTCGTCGCCCCTGTAGACCGCATCAAGATCCTCTT
TCAGGTCTCCTCAGAAGAGTTTTGCCTGCGAAAAGTCCTTCAAATCCTCG
CAAGGATCTACCATGATGAGGGGTTTTCCGGCCTGTGGAAAGGAAACAGT
GCTACGATGCTCCGTGTTTTCCCCTATGCCGGGATTCAGTTCATGACCTT
TGATGCAGTCAAGGCAAATCTTCTGAAACTGAAAGAGGGTGGGACCCATG
GAGGACAGTTGACGAACATAGAGAGTTTGTTCGCGGGGTCGTTTGCGGGG
TTTGTCTCGTGTTCCTTCACTTACCCCCTGGACTTTGCACGGGCTCGCTT
GGCGGTGGAGGGGGTGCAAGGCGCGCATTATTTGAGACCATCCGTACCGG
TGGTGGTGGGAGGAACGGCAGGAGCAGCTGTTGCGGGGGCGTCGTCGACG
GGAGGAGGAGCAGTGAGAGGAGGAGGAGGAAGAGGAGGAGAAAAAGGAGG
AAAGGGAGCAGGAGGTAAAGGGAAGGGAGCGATAAATCATAACGTCTTTG
ACATCTTTCGGGCCGCGTACAGGGAAGGGGGAATTTTGTCATTATATAGA
GGAATAACGCCGACGTTGCTGGGCATTTTGCCGTATGCCGGGATTGCCTT
TACGATCAATGACAAGGCCAACCATCAGATCCATCGATTAACAGGCCACG
AGCCGACGACGTTGCAAAAACTGGGTTGTGGCGCCTTTGCGGGTTTAGCG
GCCCAGTCGGCGACATATCCTTTGGATGTGGTTCGACGACGGATGCAGAC
AGCGGGGGTGATGTCAGGTGGTGGTGGTTGTGGTGATAAAGGAGGAGACG
GAGGAAAAGGAGGAGTGAAGGATGGGAATGCACACAATGTTCGACCACCA
TTGCGACCAACAGCATCTCCGGGGCATGATCCGCACACGGCAAGCATGCG
ACAGGTATTGATGGAGGTGTACAAGCAGGAAGGGATGAAGGGCTTGTTTA
AGGGGTTGTCGATGAATTGGATCAAGGGCCCCGTGGCGTTGGGCATTAGT
TTCACCACCTTTGATTTTTTGAAGCGGTATCTCAATGTACAGCAACCAGA
GAAGAAGATGCCGATATAG
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Coding sequence (CDS) from alignment at chr9:657976..659494+

>NO09G02150.1 ID=NO09G02150.1|Name=NO09G02150.1|organism=Nannochloropsis oceanica|type=CDS|length=1299bp|location=Sequence derived from alignment at chr9:657976..659494+ (Nannochloropsis oceanica)
ATGGTCTTCCCCGCGCAGCCGCCCCCGCCACGAGAATTGCCACGGAGAGA
CACGAGCACTGTGTTAAGGGCGATAGAAACGGTAGATGAGCAGCCGGCGC
AAATGCCCATGGACTCAAGCTCGCATTTTGAGACGGCCGTCATCACTGTC
AAGTCCATCGTCGCAGGAGGGCTCGCTGGTATGGTCGCTAAAAGCGTCGT
CGCCCCTGTAGACCGCATCAAGATCCTCTTTCAGGTCTCCTCAGAAGAGT
TTTGCCTGCGAAAAGTCCTTCAAATCCTCGCAAGGATCTACCATGATGAG
GGGTTTTCCGGCCTGTGGAAAGGAAACAGTGCTACGATGCTCCGTGTTTT
CCCCTATGCCGGGATTCAGTTCATGACCTTTGATGCAGTCAAGGCAAATC
TTCTGAAACTGAAAGAGGGTGGGACCCATGGAGGACAGTTGACGAACATA
GAGAGTTTGTTCGCGGGGTCGTTTGCGGGGTTTGTCTCGTGTTCCTTCAC
TTACCCCCTGGACTTTGCACGGGCTCGCTTGGCGGTGGAGGGGGTGCAAG
GCGCGCATTATTTGAGACCATCCGTACCGGTGGTGGTGGGAGGAACGGCA
GGAGCAGCTGTTGCGGGGGCGTCGTCGACGGGAGGAGGAGCAGTGAGAGG
AGGAGGAGGAAGAGGAGGAGAAAAAGGAGGAAAGGGAGCAGGAGGTAAAG
GGAAGGGAGCGATAAATCATAACGTCTTTGACATCTTTCGGGCCGCGTAC
AGGGAAGGGGGAATTTTGTCATTATATAGAGGAATAACGCCGACGTTGCT
GGGCATTTTGCCGTATGCCGGGATTGCCTTTACGATCAATGACAAGGCCA
ACCATCAGATCCATCGATTAACAGGCCACGAGCCGACGACGTTGCAAAAA
CTGGGTTGTGGCGCCTTTGCGGGTTTAGCGGCCCAGTCGGCGACATATCC
TTTGGATGTGGTTCGACGACGGATGCAGACAGCGGGGGTGATGTCAGGTG
GTGGTGGTTGTGGTGATAAAGGAGGAGACGGAGGAAAAGGAGGAGTGAAG
GATGGGAATGCACACAATGTTCGACCACCATTGCGACCAACAGCATCTCC
GGGGCATGATCCGCACACGGCAAGCATGCGACAGGTATTGATGGAGGTGT
ACAAGCAGGAAGGGATGAAGGGCTTGTTTAAGGGGTTGTCGATGAATTGG
ATCAAGGGCCCCGTGGCGTTGGGCATTAGTTTCACCACCTTTGATTTTTT
GAAGCGGTATCTCAATGTACAGCAACCAGAGAAGAAGATGCCGATATAG
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Synonyms
Publications