NO09G02080.1, NO09G02080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02080.1
Unique NameNO09G02080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2036
Alignment locationchr9:638952..640987 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:638952..640987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02080.1 vs.
Match: EWM27532.1 (dna-directed rna polymerase iii subunit rpc5 [Nannochloropsis gaditana])

HSP 1 Score: 579.3 bits (1492), Expect = 1.400e-161
Identity = 353/627 (56.30%), Postives = 423/627 (67.46%), Query Frame = 0 
Query:   21 DFDDKNLGGGDGGLDEEDGDDPVVREVPVYLSSKLAQELHVIQYPNRPFYRPYDLPAAARLKSQNKLLELEYALPPESPHLDEEAPRHLRLDRIKVQSSYLDPMTTYGLGIMHDGALHLTPLAGIYQMRASCDHVDAAPAEGEEKGMEGVATAE-TGVGMDEGRGEESETEAT-----KAVGAAVGG-----LVKLQHIEYKKRESERAAAARRTSYAFKKQQEEGEAWTELGVHSFESEASQVDYEKMFCTEAEQVGRRIKFLGGYTVYTDMYRSEKAKASSRDRGDDLSRMIMNDHHNQQLSAALLREKMDGSVTVEDKATVIVEGGAATATATATATATATAAGGREGKRSAVMS-IQHLRGGEQVAVIMERAHVVSLEQVLELNGDHVCSSSSSCYSNISTSSTCSSDTRYHLQDPSLHVQLVEHLKKYAVLVRGNWVRKSSLYSLPPRLSNARDTLLLLLERYGGINRQQFCTAARVSDEESLQLLKPVACLDKETRMWVAACPDDRAFLTVFSEVALQQQKYWRDKEKEKDIQVILAALVGEFDCPFPGPVIVENAGIGGGEGGEGGGGKGGRRGGRGGARAAAASPEAVAIEVHETTAAAAAGKVGSTAGGGGVGRGRRR 636
            DFDDKNLGGGDGGLDE++GDDPVVREVPVYLS  LAQELHVIQYPNRPF+RPY+LPAAAR+KS+NKLLELEY LP  SPH+DE APRHLRLDRIKVQSSYLDPMTTY +G + DGALHLTPLAGI+QMRAS +H DAAP + E+  +E V  AE  G  M+EG G+ +E+E        A  A+ GG      +KL+HIEYKKRESE+AAAARRTSYAFKKQQEEGE W EL VH   S+  Q D E+MFCT  E +GR+IKF GG T+Y D+YRS+K+KA++R+RG+ LSR I    H QQ SAA L   MD    V D        G  TA     A  ++ A G R  +  ++ + I H++G EQVA I+ RAHVVS EQVLEL+G +    S   +   +T          H    ++    +E LKK AVLVRGNWVRKS LY L  RLS+ARD LLLLL+RYGG+NRQQF  AA +SDEES  LL P+A LDK  RMWV   PDD  FLT F EVALQQQ+ WR+ E+E  +  IL  L G+ DCPFPGPV+V       G G E    KGG  G  GG R A A    V++E+ E   +   G+     GGGG+G+G+ +
Sbjct:   28 DFDDKNLGGGDGGLDEDNGDDPVVREVPVYLSDHLAQELHVIQYPNRPFFRPYELPAAARMKSRNKLLELEYFLPQHSPHIDENAPRHLRLDRIKVQSSYLDPMTTYAVGALRDGALHLTPLAGIFQMRASSEHADAAPEDREDDVLERVLLAERNGRRMEEG-GDATESEGVGPSKATASSASTGGGEGAPPIKLRHIEYKKRESEKAAAARRTSYAFKKQQEEGEPWRELLVHPLSSQTGQTDLERMFCTREEDMGRKIKFQGGGTIYLDLYRSQKSKAAARERGEGLSRTI---DHQQQHSAAFLDAGMDAGDGVID--------GDETAVK---ANLSSLAVGNRAPRDPSIGALIPHMQGAEQVATILARAHVVSFEQVLELSGGN---GSWPPHGGATTPEGVD-----HATGSAVSALALERLKKCAVLVRGNWVRKSILYGLSARLSHARDALLLLLDRYGGVNRQQFGAAAGLSDEESRGLLSPIATLDKAARMWVMVPPDDIIFLTAFPEVALQQQRLWREMERETTVLSILQTLGGKPDCPFPGPVVV-----ASGTGTEREASKGGGGGRGGGKRTARAGNGVVSMEIDEKAESMCRGE-----GGGGIGKGKTK 621
The following BLAST results are available for this feature:
BLAST of NO09G02080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27532.11.400e-16156.30dna-directed rna polymerase iii subunit rpc5 [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02080NO09G02080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02080.1NO09G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02080.1.cds1NO09G02080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02080.1 ID=NO09G02080.1|Name=NO09G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp
AAACACAGCACACAGACAGGCCCTCCTTCGGTGACAAAAACTAGCGAAAG
CAGGACTCTACAGGTAATCGACAAGCTTAAAGTATCTCACGTCGCACCAG
CAGCAGCAGCAGCTACACCACACAAATGGCGGCATCGTCTTTTGAAGAGG
ACAACCCGGACAAGAACCCTCAATTGATCGACGTGGACTTTGACGACAAG
AACTTGGGCGGTGGCGACGGTGGACTGGACGAGGAGGATGGGGACGACCC
TGTGGTACGTGAGGTACCTGTCTACCTCTCCAGTAAGCTGGCTCAGGAGC
TCCACGTGATCCAGTACCCCAACCGACCCTTTTATCGACCATATGACCTG
CCGGCCGCCGCGCGATTAAAGTCACAGAACAAGTTATTAGAGTTGGAGTA
TGCCTTGCCACCTGAATCCCCCCACCTCGACGAGGAAGCCCCAAGACATT
TGAGACTGGATCGAATCAAGGTCCAATCTTCGTATCTCGACCCAATGACG
ACATACGGGCTCGGGATTATGCATGATGGGGCCTTGCATTTGACTCCTTT
AGCGGGTATTTATCAAATGCGCGCGTCGTGTGACCATGTGGATGCGGCGC
CGGCGGAGGGGGAGGAGAAAGGCATGGAGGGAGTAGCAACAGCAGAGACA
GGCGTGGGGATGGACGAAGGAAGAGGAGAGGAAAGTGAGACGGAGGCCAC
CAAGGCTGTGGGGGCAGCAGTTGGTGGACTGGTGAAGCTGCAGCATATTG
AATACAAAAAGAGGGAGTCAGAGAGGGCAGCAGCGGCACGACGGACCTCT
TACGCGTTTAAGAAGCAGCAGGAGGAAGGTGAGGCATGGACCGAGTTGGG
GGTGCATTCATTCGAGAGCGAGGCAAGTCAGGTAGATTACGAGAAGATGT
TTTGCACGGAGGCGGAGCAGGTGGGGAGGAGGATCAAGTTTCTGGGCGGA
TACACGGTCTACACAGATATGTACAGGTCGGAGAAGGCCAAGGCGTCGTC
AAGGGATAGAGGGGACGATCTGAGCCGAATGATCATGAATGACCACCATA
ACCAGCAGCTATCGGCGGCGTTGTTGAGAGAAAAGATGGATGGAAGTGTG
ACTGTTGAAGACAAGGCGACGGTGATTGTGGAAGGAGGAGCTGCTACTGC
TACTGCTACTGCTACTGCTACTGCCACTGCTACTGCTGCCGGTGGAAGAG
AGGGGAAGAGATCCGCAGTGATGTCGATTCAGCATCTGAGGGGCGGGGAA
CAAGTTGCCGTAATCATGGAGAGGGCGCATGTTGTCTCCCTGGAGCAGGT
GTTGGAGTTGAATGGTGACCATGTTTGCAGCAGCAGCAGCAGCTGCTACA
GCAATATCTCGACGAGCAGTACCTGTAGCAGTGACACACGTTATCACTTA
CAAGATCCAAGCCTACATGTTCAATTAGTTGAACACTTGAAAAAATACGC
CGTCCTCGTCCGAGGGAACTGGGTGCGGAAATCCTCCCTCTACAGCCTCC
CTCCCCGGCTCTCCAACGCACGCGACACCCTGCTCTTGCTGCTGGAAAGA
TATGGAGGGATCAATCGCCAACAGTTCTGTACTGCTGCCCGGGTGTCGGA
CGAGGAGTCCTTGCAGCTGTTAAAACCTGTGGCATGCTTGGATAAAGAAA
CGAGGATGTGGGTTGCCGCTTGTCCGGACGATAGGGCATTTTTGACGGTG
TTTTCTGAAGTGGCGCTGCAGCAGCAGAAGTATTGGAGGGATAAGGAGAA
GGAAAAGGACATACAAGTGATTTTAGCAGCATTGGTCGGGGAGTTTGATT
GTCCGTTTCCAGGGCCGGTGATAGTGGAGAATGCGGGGATTGGAGGCGGA
GAAGGAGGGGAAGGAGGGGGAGGAAAAGGTGGAAGGAGGGGAGGGAGAGG
TGGTGCACGTGCTGCCGCTGCTTCGCCCGAAGCTGTGGCTATAGAGGTTC
ATGAAACGACGGCAGCGGCTGCGGCAGGGAAAGTTGGCAGTACGGCGGGT
GGAGGGGGGGTGGGGAGGGGGAGGAGGAGAAAATAG
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protein sequence of NO09G02080.1

>NO09G02080.1-protein ID=NO09G02080.1-protein|Name=NO09G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=637bp
MAASSFEEDNPDKNPQLIDVDFDDKNLGGGDGGLDEEDGDDPVVREVPVY
LSSKLAQELHVIQYPNRPFYRPYDLPAAARLKSQNKLLELEYALPPESPH
LDEEAPRHLRLDRIKVQSSYLDPMTTYGLGIMHDGALHLTPLAGIYQMRA
SCDHVDAAPAEGEEKGMEGVATAETGVGMDEGRGEESETEATKAVGAAVG
GLVKLQHIEYKKRESERAAAARRTSYAFKKQQEEGEAWTELGVHSFESEA
SQVDYEKMFCTEAEQVGRRIKFLGGYTVYTDMYRSEKAKASSRDRGDDLS
RMIMNDHHNQQLSAALLREKMDGSVTVEDKATVIVEGGAATATATATATA
TATAAGGREGKRSAVMSIQHLRGGEQVAVIMERAHVVSLEQVLELNGDHV
CSSSSSCYSNISTSSTCSSDTRYHLQDPSLHVQLVEHLKKYAVLVRGNWV
RKSSLYSLPPRLSNARDTLLLLLERYGGINRQQFCTAARVSDEESLQLLK
PVACLDKETRMWVAACPDDRAFLTVFSEVALQQQKYWRDKEKEKDIQVIL
AALVGEFDCPFPGPVIVENAGIGGGEGGEGGGGKGGRRGGRGGARAAAAS
PEAVAIEVHETTAAAAAGKVGSTAGGGGVGRGRRRK*
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mRNA from alignment at chr9:638952..640987+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02080.1 ID=NO09G02080.1|Name=NO09G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp|location=Sequence derived from alignment at chr9:638952..640987+ (Nannochloropsis oceanica)
AAACACAGCACACAGACAGGCCCTCCTTCGGTGACAAAAACTAGCGAAAG
CAGGACTCTACAGGTAATCGACAAGCTTAAAGTATCTCACGTCGCACCAG
CAGCAGCAGCAGCTACACCACACAAATGGCGGCATCGTCTTTTGAAGAGG
ACAACCCGGACAAGAACCCTCAATTGATCGACGTGGACTTTGACGACAAG
AACTTGGGCGGTGGCGACGGTGGACTGGACGAGGAGGATGGGGACGACCC
TGTGGTACGTGAGGTACCTGTCTACCTCTCCAGTAAGCTGGCTCAGGAGC
TCCACGTGATCCAGTACCCCAACCGACCCTTTTATCGACCATATGACCTG
CCGGCCGCCGCGCGATTAAAGTCACAGAACAAGTTATTAGAGTTGGAGTA
TGCCTTGCCACCTGAATCCCCCCACCTCGACGAGGAAGCCCCAAGACATT
TGAGACTGGATCGAATCAAGGTCCAATCTTCGTATCTCGACCCAATGACG
ACATACGGGCTCGGGATTATGCATGATGGGGCCTTGCATTTGACTCCTTT
AGCGGGTATTTATCAAATGCGCGCGTCGTGTGACCATGTGGATGCGGCGC
CGGCGGAGGGGGAGGAGAAAGGCATGGAGGGAGTAGCAACAGCAGAGACA
GGCGTGGGGATGGACGAAGGAAGAGGAGAGGAAAGTGAGACGGAGGCCAC
CAAGGCTGTGGGGGCAGCAGTTGGTGGACTGGTGAAGCTGCAGCATATTG
AATACAAAAAGAGGGAGTCAGAGAGGGCAGCAGCGGCACGACGGACCTCT
TACGCGTTTAAGAAGCAGCAGGAGGAAGGTGAGGCATGGACCGAGTTGGG
GGTGCATTCATTCGAGAGCGAGGCAAGTCAGGTAGATTACGAGAAGATGT
TTTGCACGGAGGCGGAGCAGGTGGGGAGGAGGATCAAGTTTCTGGGCGGA
TACACGGTCTACACAGATATGTACAGGTCGGAGAAGGCCAAGGCGTCGTC
AAGGGATAGAGGGGACGATCTGAGCCGAATGATCATGAATGACCACCATA
ACCAGCAGCTATCGGCGGCGTTGTTGAGAGAAAAGATGGATGGAAGTGTG
ACTGTTGAAGACAAGGCGACGGTGATTGTGGAAGGAGGAGCTGCTACTGC
TACTGCTACTGCTACTGCTACTGCCACTGCTACTGCTGCCGGTGGAAGAG
AGGGGAAGAGATCCGCAGTGATGTCGATTCAGCATCTGAGGGGCGGGGAA
CAAGTTGCCGTAATCATGGAGAGGGCGCATGTTGTCTCCCTGGAGCAGGT
GTTGGAGTTGAATGGTGACCATGTTTGCAGCAGCAGCAGCAGCTGCTACA
GCAATATCTCGACGAGCAGTACCTGTAGCAGTGACACACGTTATCACTTA
CAAGATCCAAGCCTACATGTTCAATTAGTTGAACACTTGAAAAAATACGC
CGTCCTCGTCCGAGGGAACTGGGTGCGGAAATCCTCCCTCTACAGCCTCC
CTCCCCGGCTCTCCAACGCACGCGACACCCTGCTCTTGCTGCTGGAAAGA
TATGGAGGGATCAATCGCCAACAGTTCTGTACTGCTGCCCGGGTGTCGGA
CGAGGAGTCCTTGCAGCTGTTAAAACCTGTGGCATGCTTGGATAAAGAAA
CGAGGATGTGGGTTGCCGCTTGTCCGGACGATAGGGCATTTTTGACGGTG
TTTTCTGAAGTGGCGCTGCAGCAGCAGAAGTATTGGAGGGATAAGGAGAA
GGAAAAGGACATACAAGTGATTTTAGCAGCATTGGTCGGGGAGTTTGATT
GTCCGTTTCCAGGGCCGGTGATAGTGGAGAATGCGGGGATTGGAGGCGGA
GAAGGAGGGGAAGGAGGGGGAGGAAAAGGTGGAAGGAGGGGAGGGAGAGG
TGGTGCACGTGCTGCCGCTGCTTCGCCCGAAGCTGTGGCTATAGAGGTTC
ATGAAACGACGGCAGCGGCTGCGGCAGGGAAAGTTGGCAGTACGGCGGGT
GGAGGGGGGGTGGGGAGGGGGAGGAGGAGAAAATAG
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Coding sequence (CDS) from alignment at chr9:638952..640987+

>NO09G02080.1 ID=NO09G02080.1|Name=NO09G02080.1|organism=Nannochloropsis oceanica|type=CDS|length=1911bp|location=Sequence derived from alignment at chr9:638952..640987+ (Nannochloropsis oceanica)
ATGGCGGCATCGTCTTTTGAAGAGGACAACCCGGACAAGAACCCTCAATT
GATCGACGTGGACTTTGACGACAAGAACTTGGGCGGTGGCGACGGTGGAC
TGGACGAGGAGGATGGGGACGACCCTGTGGTACGTGAGGTACCTGTCTAC
CTCTCCAGTAAGCTGGCTCAGGAGCTCCACGTGATCCAGTACCCCAACCG
ACCCTTTTATCGACCATATGACCTGCCGGCCGCCGCGCGATTAAAGTCAC
AGAACAAGTTATTAGAGTTGGAGTATGCCTTGCCACCTGAATCCCCCCAC
CTCGACGAGGAAGCCCCAAGACATTTGAGACTGGATCGAATCAAGGTCCA
ATCTTCGTATCTCGACCCAATGACGACATACGGGCTCGGGATTATGCATG
ATGGGGCCTTGCATTTGACTCCTTTAGCGGGTATTTATCAAATGCGCGCG
TCGTGTGACCATGTGGATGCGGCGCCGGCGGAGGGGGAGGAGAAAGGCAT
GGAGGGAGTAGCAACAGCAGAGACAGGCGTGGGGATGGACGAAGGAAGAG
GAGAGGAAAGTGAGACGGAGGCCACCAAGGCTGTGGGGGCAGCAGTTGGT
GGACTGGTGAAGCTGCAGCATATTGAATACAAAAAGAGGGAGTCAGAGAG
GGCAGCAGCGGCACGACGGACCTCTTACGCGTTTAAGAAGCAGCAGGAGG
AAGGTGAGGCATGGACCGAGTTGGGGGTGCATTCATTCGAGAGCGAGGCA
AGTCAGGTAGATTACGAGAAGATGTTTTGCACGGAGGCGGAGCAGGTGGG
GAGGAGGATCAAGTTTCTGGGCGGATACACGGTCTACACAGATATGTACA
GGTCGGAGAAGGCCAAGGCGTCGTCAAGGGATAGAGGGGACGATCTGAGC
CGAATGATCATGAATGACCACCATAACCAGCAGCTATCGGCGGCGTTGTT
GAGAGAAAAGATGGATGGAAGTGTGACTGTTGAAGACAAGGCGACGGTGA
TTGTGGAAGGAGGAGCTGCTACTGCTACTGCTACTGCTACTGCTACTGCC
ACTGCTACTGCTGCCGGTGGAAGAGAGGGGAAGAGATCCGCAGTGATGTC
GATTCAGCATCTGAGGGGCGGGGAACAAGTTGCCGTAATCATGGAGAGGG
CGCATGTTGTCTCCCTGGAGCAGGTGTTGGAGTTGAATGGTGACCATGTT
TGCAGCAGCAGCAGCAGCTGCTACAGCAATATCTCGACGAGCAGTACCTG
TAGCAGTGACACACGTTATCACTTACAAGATCCAAGCCTACATGTTCAAT
TAGTTGAACACTTGAAAAAATACGCCGTCCTCGTCCGAGGGAACTGGGTG
CGGAAATCCTCCCTCTACAGCCTCCCTCCCCGGCTCTCCAACGCACGCGA
CACCCTGCTCTTGCTGCTGGAAAGATATGGAGGGATCAATCGCCAACAGT
TCTGTACTGCTGCCCGGGTGTCGGACGAGGAGTCCTTGCAGCTGTTAAAA
CCTGTGGCATGCTTGGATAAAGAAACGAGGATGTGGGTTGCCGCTTGTCC
GGACGATAGGGCATTTTTGACGGTGTTTTCTGAAGTGGCGCTGCAGCAGC
AGAAGTATTGGAGGGATAAGGAGAAGGAAAAGGACATACAAGTGATTTTA
GCAGCATTGGTCGGGGAGTTTGATTGTCCGTTTCCAGGGCCGGTGATAGT
GGAGAATGCGGGGATTGGAGGCGGAGAAGGAGGGGAAGGAGGGGGAGGAA
AAGGTGGAAGGAGGGGAGGGAGAGGTGGTGCACGTGCTGCCGCTGCTTCG
CCCGAAGCTGTGGCTATAGAGGTTCATGAAACGACGGCAGCGGCTGCGGC
AGGGAAAGTTGGCAGTACGGCGGGTGGAGGGGGGGTGGGGAGGGGGAGGA
GGAGAAAATAG
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Synonyms
Publications