NO09G02040.1, NO09G02040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02040.1
Unique NameNO09G02040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length852
Alignment locationchr9:626072..626923 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:626072..626923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G02040.1 vs.
Match: EWM27538.1 (hypothetical protein Naga_100015g67 [Nannochloropsis gaditana])

HSP 1 Score: 309.7 bits (792), Expect = 9.500e-81
Identity = 175/256 (68.36%), Postives = 198/256 (77.34%), Query Frame = 0 
Query:   23 TYAFMSPYSRPAF----PAPASAAITARHGRRISTSTLSTPNQPFFRSLAASEDDGEDDLTERSVSFLTQLARALNKDVPVPTFLVPPRASDVGRVRASVSSSMTTIKGWFPLSMGVSLTLGNPVYPAAFVGFLYLSRPTDAPDVAAALAAALLAGVVNPLLVSFVDATGWDDTFLGRFPFLVGAAATFYVLAQVLTEGKEVFQEVPRREEKARVPGLKQERDLRFFDVKMKNKDEGGGGEANLTVEVKEKRDESE 275
            T AF++ Y         P P   A +  H R +S            R  A  EDDG DDLT+RSVS LTQ+A+AL+K+VPVP+FLVPPRA DVGRV +SVSSS TTI GWFPLSMGV+LTLGNPVYPAAF+GFLYLSRPT+APDVAAA+AA L+AGVVNPLLVSF +ATG DDTFL RFPF +GAA + YVLAQVLTEGKEVFQ+ PRR EK RVPGLKQERDLRFFDVKMKNK+   G EANLTVEV+EK  +SE
Sbjct:   31 TRAFLTSYHPNGVLRSRPLPCITASSKFHPRLLS------------RLSAYIEDDG-DDLTDRSVSLLTQVAKALSKEVPVPSFLVPPRAGDVGRVTSSVSSSTTTIMGWFPLSMGVALTLGNPVYPAAFLGFLYLSRPTEAPDVAAAVAAVLVAGVVNPLLVSFTEATGLDDTFLARFPFFLGAATSAYVLAQVLTEGKEVFQDAPRRAEKERVPGLKQERDLRFFDVKMKNKNGTEGEEANLTVEVQEKPGQSE 273
The following BLAST results are available for this feature:
BLAST of NO09G02040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27538.19.500e-8168.36hypothetical protein Naga_100015g67 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02040NO09G02040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02040.1NO09G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02040.1.cds1NO09G02040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02040.1 ID=NO09G02040.1|Name=NO09G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=852bp
ATGCAGCCGCCGCAATTCGCAACGCCCCATCTCCTCCTTCTTTCAGCTGT
CTTTTCCACCTTTTCAACTTATGCTTTCATGTCTCCCTACTCCCGGCCCG
CCTTTCCTGCTCCTGCTTCTGCTGCTATTACCGCCCGCCACGGCCGCCGC
ATTTCTACTTCCACCCTCTCCACTCCTAATCAGCCATTCTTTCGTAGCCT
AGCCGCCTCCGAAGACGACGGGGAAGATGACTTGACGGAACGCTCAGTGT
CGTTTCTCACCCAGCTGGCCAGGGCACTGAACAAGGACGTACCCGTGCCC
ACCTTCCTGGTGCCTCCCAGGGCAAGCGATGTGGGCCGCGTTCGGGCCTC
AGTCTCATCTAGTATGACGACCATCAAAGGCTGGTTTCCCTTGTCCATGG
GTGTGTCCCTGACATTGGGTAACCCGGTCTACCCGGCGGCGTTTGTCGGC
TTCCTCTACCTCTCTCGCCCTACCGACGCCCCCGACGTGGCAGCCGCCCT
TGCCGCGGCGCTGCTGGCCGGGGTGGTCAACCCTTTGTTGGTCTCTTTTG
TCGACGCTACGGGATGGGACGATACTTTTTTGGGCCGCTTTCCCTTTTTG
GTGGGTGCCGCGGCCACATTTTACGTCCTGGCGCAGGTGTTGACTGAGGG
GAAGGAAGTGTTTCAGGAGGTGCCTCGGCGGGAGGAGAAGGCAAGAGTGC
CGGGCTTGAAGCAAGAGCGGGACTTGCGCTTTTTTGATGTGAAGATGAAG
AATAAGGACGAGGGTGGTGGGGGTGAGGCGAACTTAACGGTGGAGGTAAA
AGAGAAAAGAGACGAATCCGAGTCAAAGGGGCGGTGGCGGGAGGACGAGT
AG
back to top

protein sequence of NO09G02040.1

>NO09G02040.1-protein ID=NO09G02040.1-protein|Name=NO09G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MQPPQFATPHLLLLSAVFSTFSTYAFMSPYSRPAFPAPASAAITARHGRR
ISTSTLSTPNQPFFRSLAASEDDGEDDLTERSVSFLTQLARALNKDVPVP
TFLVPPRASDVGRVRASVSSSMTTIKGWFPLSMGVSLTLGNPVYPAAFVG
FLYLSRPTDAPDVAAALAAALLAGVVNPLLVSFVDATGWDDTFLGRFPFL
VGAAATFYVLAQVLTEGKEVFQEVPRREEKARVPGLKQERDLRFFDVKMK
NKDEGGGGEANLTVEVKEKRDESESKGRWREDE*
back to top

mRNA from alignment at chr9:626072..626923-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02040.1 ID=NO09G02040.1|Name=NO09G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=852bp|location=Sequence derived from alignment at chr9:626072..626923- (Nannochloropsis oceanica)
ATGCAGCCGCCGCAATTCGCAACGCCCCATCTCCTCCTTCTTTCAGCTGT
CTTTTCCACCTTTTCAACTTATGCTTTCATGTCTCCCTACTCCCGGCCCG
CCTTTCCTGCTCCTGCTTCTGCTGCTATTACCGCCCGCCACGGCCGCCGC
ATTTCTACTTCCACCCTCTCCACTCCTAATCAGCCATTCTTTCGTAGCCT
AGCCGCCTCCGAAGACGACGGGGAAGATGACTTGACGGAACGCTCAGTGT
CGTTTCTCACCCAGCTGGCCAGGGCACTGAACAAGGACGTACCCGTGCCC
ACCTTCCTGGTGCCTCCCAGGGCAAGCGATGTGGGCCGCGTTCGGGCCTC
AGTCTCATCTAGTATGACGACCATCAAAGGCTGGTTTCCCTTGTCCATGG
GTGTGTCCCTGACATTGGGTAACCCGGTCTACCCGGCGGCGTTTGTCGGC
TTCCTCTACCTCTCTCGCCCTACCGACGCCCCCGACGTGGCAGCCGCCCT
TGCCGCGGCGCTGCTGGCCGGGGTGGTCAACCCTTTGTTGGTCTCTTTTG
TCGACGCTACGGGATGGGACGATACTTTTTTGGGCCGCTTTCCCTTTTTG
GTGGGTGCCGCGGCCACATTTTACGTCCTGGCGCAGGTGTTGACTGAGGG
GAAGGAAGTGTTTCAGGAGGTGCCTCGGCGGGAGGAGAAGGCAAGAGTGC
CGGGCTTGAAGCAAGAGCGGGACTTGCGCTTTTTTGATGTGAAGATGAAG
AATAAGGACGAGGGTGGTGGGGGTGAGGCGAACTTAACGGTGGAGGTAAA
AGAGAAAAGAGACGAATCCGAGTCAAAGGGGCGGTGGCGGGAGGACGAGT
AG
back to top

Coding sequence (CDS) from alignment at chr9:626072..626923-

>NO09G02040.1 ID=NO09G02040.1|Name=NO09G02040.1|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at chr9:626072..626923- (Nannochloropsis oceanica)
ATGCAGCCGCCGCAATTCGCAACGCCCCATCTCCTCCTTCTTTCAGCTGT
CTTTTCCACCTTTTCAACTTATGCTTTCATGTCTCCCTACTCCCGGCCCG
CCTTTCCTGCTCCTGCTTCTGCTGCTATTACCGCCCGCCACGGCCGCCGC
ATTTCTACTTCCACCCTCTCCACTCCTAATCAGCCATTCTTTCGTAGCCT
AGCCGCCTCCGAAGACGACGGGGAAGATGACTTGACGGAACGCTCAGTGT
CGTTTCTCACCCAGCTGGCCAGGGCACTGAACAAGGACGTACCCGTGCCC
ACCTTCCTGGTGCCTCCCAGGGCAAGCGATGTGGGCCGCGTTCGGGCCTC
AGTCTCATCTAGTATGACGACCATCAAAGGCTGGTTTCCCTTGTCCATGG
GTGTGTCCCTGACATTGGGTAACCCGGTCTACCCGGCGGCGTTTGTCGGC
TTCCTCTACCTCTCTCGCCCTACCGACGCCCCCGACGTGGCAGCCGCCCT
TGCCGCGGCGCTGCTGGCCGGGGTGGTCAACCCTTTGTTGGTCTCTTTTG
TCGACGCTACGGGATGGGACGATACTTTTTTGGGCCGCTTTCCCTTTTTG
GTGGGTGCCGCGGCCACATTTTACGTCCTGGCGCAGGTGTTGACTGAGGG
GAAGGAAGTGTTTCAGGAGGTGCCTCGGCGGGAGGAGAAGGCAAGAGTGC
CGGGCTTGAAGCAAGAGCGGGACTTGCGCTTTTTTGATGTGAAGATGAAG
AATAAGGACGAGGGTGGTGGGGGTGAGGCGAACTTAACGGTGGAGGTAAA
AGAGAAAAGAGACGAATCCGAGTCAAAGGGGCGGTGGCGGGAGGACGAGT
AG
back to top
Synonyms
Publications