NO09G01950.1, NO09G01950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01950.1
Unique NameNO09G01950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1500
Alignment locationchr9:601915..603414 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:601915..603414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01950.1 vs.
Match: CBJ27008.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 112.1 bits (279), Expect = 5.100e-21
Identity = 124/353 (35.13%), Postives = 153/353 (43.34%), Query Frame = 0 
Query:  146 PKDSL---ALAVHVLLQEEGFVCYGEDEQKGGPTGFASPIRPVSRSRLVPPRWNADPANVCFSYRHDRLKGRDIKLMVLWMDDERVVLELQDTGGGGKTTTMTINGPDYVKIDNNSSSSSNNSGSSGKGNPANANSTSLLTHFRPSHLNPLAASIHTGFIVELLPTLTASAGAGAGRGAILPTPNPPFSSDSQGQAQRPPF-----DIPVPNPLGP---MVPPGYGDY-------GRRGGGLVPDFEGDLQPGGGWGGPGGGNLMGPGHPIFTGGGEGRMGEGGGLGIPQPRFDPYGPVIP---------PGRGGPPMPPGRGGVIDPNDPRGPRRAFREPDPDHLPQPGPPG 472
            PK +L   ALA+H LL  EGFVC G+D++ G   GFA+P+R V + +LVP RW+ADP+ V F YR     G             +V L     GGG     +   G +    D +            K   +     +L + FR   L  +A            P + A     AG G  +P P+  FS  + G+  RP       +   P  +GP     PPG G         G  GG L P   G    GGG G PG G L+GPGHP+F        G GGG G  +PRFDPYGP IP         PGRGG     GRGG      PRGP      PD DHL  PG  G
Sbjct:   38 PKSALHASALALHCLLVTEGFVCTGQDDKAGAIKGFAAPVRDVPQEKLVPDRWDADPSAVSFRYRRPDRTG-------------KVYLFKAVAGGGPAQFFLGEKGGEIQSADVDLEPLER---CGPKFFESEGFFETLFSVFRREVLAHIA------------PPVVAPPPQPAG-GETVPAPDRNFSPSTSGK-PRPAIPGTAAEDDDPLRVGPPRFAGPPGVGPTPFLPGRGGDFGGDLFPSGVGGPAGGGGGGLPGPGGLLGPGHPMF--------GGGGGAGYMEPRFDPYGPPIPGQQPWGPGVPGRGG----GGRGGPAQ-GGPRGPPGG---PDNDHLRPPGGSG 344
The following BLAST results are available for this feature:
BLAST of NO09G01950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ27008.15.100e-2135.13expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01950NO09G01950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01950.1NO09G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01950.1.cds1NO09G01950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01950.1 ID=NO09G01950.1|Name=NO09G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp
ACAGCCATGCAGCAGCAGGATGAGATCGCCGTGGCGGATCAGCTTCTAGC
TGAATGGCGGGTCCAAGCTGTCGAACGCTTGCCTGCCGAGGGGTCTGTTG
TGCGGCGCATGCTTATGAAAGGTCTGCAAGAATCGGAGGCGCTGGTCGAC
AAGGTGAAACAAGCCGCGGAGATGCGAAAACAGATCGAGGGACTGCCTGT
TGGCGTGGTAAAGGAGCACATGAGCAAGGCATTGGGCCAGCTTGAGACGG
AGCTTGCAGCCACGGGACGTGGGGAGGATGGAACCGGGACGGGTACAAGG
ACGCTGGCTCAAGGCACGGAGGAGGAAGAGGCTCCTTCTGCTAGTAGTAT
TACCACTGCGGCATCCTCGGAGGGTGACACGACGTACAAACTGCTAGCGG
AGCGGTTCGCGCAGGCAGACAGCAGCGTGCAGGTAAAGGGTCCGAAAGAC
TCTCTGGCCCTGGCCGTGCACGTACTGCTGCAGGAGGAAGGCTTTGTGTG
CTATGGCGAAGATGAACAAAAAGGCGGGCCCACAGGCTTCGCCTCCCCTA
TTCGACCTGTGTCGCGCTCCCGCTTGGTGCCTCCCCGATGGAACGCCGAC
CCGGCCAACGTCTGCTTCTCCTATCGCCATGACAGGCTTAAAGGTCGCGA
TATCAAGCTCATGGTGCTCTGGATGGACGACGAACGCGTCGTGCTTGAGT
TACAAGACACGGGTGGCGGTGGAAAGACTACCACGATGACGATCAACGGG
CCGGACTATGTCAAGATTGACAACAACAGCAGCAGCAGCAGCAACAACAG
CGGCAGTAGTGGCAAAGGCAACCCTGCCAACGCAAACAGCACCAGCCTCC
TCACCCACTTCCGTCCCTCACACTTGAACCCACTGGCCGCCTCCATCCAC
ACGGGTTTCATTGTCGAACTCTTGCCCACTCTCACCGCCAGTGCCGGGGC
AGGCGCAGGCCGTGGTGCCATCCTTCCCACACCTAACCCCCCTTTTTCCT
CTGACTCGCAAGGGCAAGCGCAACGTCCTCCATTTGATATTCCTGTACCT
AATCCGCTTGGTCCAATGGTGCCACCGGGGTATGGTGATTATGGGCGTCG
TGGCGGGGGGTTAGTTCCTGATTTTGAGGGAGATTTGCAGCCGGGGGGAG
GATGGGGAGGGCCCGGGGGAGGAAACCTGATGGGGCCCGGTCATCCTATT
TTTACGGGAGGGGGGGAGGGACGGATGGGTGAAGGAGGAGGGCTAGGCAT
ACCTCAGCCACGGTTCGATCCGTATGGGCCTGTGATTCCGCCAGGTAGGG
GAGGGCCGCCGATGCCACCGGGAAGGGGAGGGGTGATCGATCCTAACGAT
CCTCGGGGACCTAGAAGAGCGTTTCGTGAACCAGATCCGGACCATTTGCC
GCAGCCTGGACCACCGGGGACCTTCAGCAGTGGTGGAGGAGGAGGCGGAG
GAGGCGGGGGAGGCGGGGGAGGAGGTGGGAATTTCTATTTTTAAGCGGAG
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protein sequence of NO09G01950.1

>NO09G01950.1-protein ID=NO09G01950.1-protein|Name=NO09G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MQQQDEIAVADQLLAEWRVQAVERLPAEGSVVRRMLMKGLQESEALVDKV
KQAAEMRKQIEGLPVGVVKEHMSKALGQLETELAATGRGEDGTGTGTRTL
AQGTEEEEAPSASSITTAASSEGDTTYKLLAERFAQADSSVQVKGPKDSL
ALAVHVLLQEEGFVCYGEDEQKGGPTGFASPIRPVSRSRLVPPRWNADPA
NVCFSYRHDRLKGRDIKLMVLWMDDERVVLELQDTGGGGKTTTMTINGPD
YVKIDNNSSSSSNNSGSSGKGNPANANSTSLLTHFRPSHLNPLAASIHTG
FIVELLPTLTASAGAGAGRGAILPTPNPPFSSDSQGQAQRPPFDIPVPNP
LGPMVPPGYGDYGRRGGGLVPDFEGDLQPGGGWGGPGGGNLMGPGHPIFT
GGGEGRMGEGGGLGIPQPRFDPYGPVIPPGRGGPPMPPGRGGVIDPNDPR
GPRRAFREPDPDHLPQPGPPGTFSSGGGGGGGGGGGGGGGGNFYF*
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mRNA from alignment at chr9:601915..603414+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01950.1 ID=NO09G01950.1|Name=NO09G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp|location=Sequence derived from alignment at chr9:601915..603414+ (Nannochloropsis oceanica)
ACAGCCATGCAGCAGCAGGATGAGATCGCCGTGGCGGATCAGCTTCTAGC
TGAATGGCGGGTCCAAGCTGTCGAACGCTTGCCTGCCGAGGGGTCTGTTG
TGCGGCGCATGCTTATGAAAGGTCTGCAAGAATCGGAGGCGCTGGTCGAC
AAGGTGAAACAAGCCGCGGAGATGCGAAAACAGATCGAGGGACTGCCTGT
TGGCGTGGTAAAGGAGCACATGAGCAAGGCATTGGGCCAGCTTGAGACGG
AGCTTGCAGCCACGGGACGTGGGGAGGATGGAACCGGGACGGGTACAAGG
ACGCTGGCTCAAGGCACGGAGGAGGAAGAGGCTCCTTCTGCTAGTAGTAT
TACCACTGCGGCATCCTCGGAGGGTGACACGACGTACAAACTGCTAGCGG
AGCGGTTCGCGCAGGCAGACAGCAGCGTGCAGGTAAAGGGTCCGAAAGAC
TCTCTGGCCCTGGCCGTGCACGTACTGCTGCAGGAGGAAGGCTTTGTGTG
CTATGGCGAAGATGAACAAAAAGGCGGGCCCACAGGCTTCGCCTCCCCTA
TTCGACCTGTGTCGCGCTCCCGCTTGGTGCCTCCCCGATGGAACGCCGAC
CCGGCCAACGTCTGCTTCTCCTATCGCCATGACAGGCTTAAAGGTCGCGA
TATCAAGCTCATGGTGCTCTGGATGGACGACGAACGCGTCGTGCTTGAGT
TACAAGACACGGGTGGCGGTGGAAAGACTACCACGATGACGATCAACGGG
CCGGACTATGTCAAGATTGACAACAACAGCAGCAGCAGCAGCAACAACAG
CGGCAGTAGTGGCAAAGGCAACCCTGCCAACGCAAACAGCACCAGCCTCC
TCACCCACTTCCGTCCCTCACACTTGAACCCACTGGCCGCCTCCATCCAC
ACGGGTTTCATTGTCGAACTCTTGCCCACTCTCACCGCCAGTGCCGGGGC
AGGCGCAGGCCGTGGTGCCATCCTTCCCACACCTAACCCCCCTTTTTCCT
CTGACTCGCAAGGGCAAGCGCAACGTCCTCCATTTGATATTCCTGTACCT
AATCCGCTTGGTCCAATGGTGCCACCGGGGTATGGTGATTATGGGCGTCG
TGGCGGGGGGTTAGTTCCTGATTTTGAGGGAGATTTGCAGCCGGGGGGAG
GATGGGGAGGGCCCGGGGGAGGAAACCTGATGGGGCCCGGTCATCCTATT
TTTACGGGAGGGGGGGAGGGACGGATGGGTGAAGGAGGAGGGCTAGGCAT
ACCTCAGCCACGGTTCGATCCGTATGGGCCTGTGATTCCGCCAGGTAGGG
GAGGGCCGCCGATGCCACCGGGAAGGGGAGGGGTGATCGATCCTAACGAT
CCTCGGGGACCTAGAAGAGCGTTTCGTGAACCAGATCCGGACCATTTGCC
GCAGCCTGGACCACCGGGGACCTTCAGCAGTGGTGGAGGAGGAGGCGGAG
GAGGCGGGGGAGGCGGGGGAGGAGGTGGGAATTTCTATTTTTAAGCGGAG
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Coding sequence (CDS) from alignment at chr9:601915..603414+

>NO09G01950.1 ID=NO09G01950.1|Name=NO09G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at chr9:601915..603414+ (Nannochloropsis oceanica)
ATGCAGCAGCAGGATGAGATCGCCGTGGCGGATCAGCTTCTAGCTGAATG
GCGGGTCCAAGCTGTCGAACGCTTGCCTGCCGAGGGGTCTGTTGTGCGGC
GCATGCTTATGAAAGGTCTGCAAGAATCGGAGGCGCTGGTCGACAAGGTG
AAACAAGCCGCGGAGATGCGAAAACAGATCGAGGGACTGCCTGTTGGCGT
GGTAAAGGAGCACATGAGCAAGGCATTGGGCCAGCTTGAGACGGAGCTTG
CAGCCACGGGACGTGGGGAGGATGGAACCGGGACGGGTACAAGGACGCTG
GCTCAAGGCACGGAGGAGGAAGAGGCTCCTTCTGCTAGTAGTATTACCAC
TGCGGCATCCTCGGAGGGTGACACGACGTACAAACTGCTAGCGGAGCGGT
TCGCGCAGGCAGACAGCAGCGTGCAGGTAAAGGGTCCGAAAGACTCTCTG
GCCCTGGCCGTGCACGTACTGCTGCAGGAGGAAGGCTTTGTGTGCTATGG
CGAAGATGAACAAAAAGGCGGGCCCACAGGCTTCGCCTCCCCTATTCGAC
CTGTGTCGCGCTCCCGCTTGGTGCCTCCCCGATGGAACGCCGACCCGGCC
AACGTCTGCTTCTCCTATCGCCATGACAGGCTTAAAGGTCGCGATATCAA
GCTCATGGTGCTCTGGATGGACGACGAACGCGTCGTGCTTGAGTTACAAG
ACACGGGTGGCGGTGGAAAGACTACCACGATGACGATCAACGGGCCGGAC
TATGTCAAGATTGACAACAACAGCAGCAGCAGCAGCAACAACAGCGGCAG
TAGTGGCAAAGGCAACCCTGCCAACGCAAACAGCACCAGCCTCCTCACCC
ACTTCCGTCCCTCACACTTGAACCCACTGGCCGCCTCCATCCACACGGGT
TTCATTGTCGAACTCTTGCCCACTCTCACCGCCAGTGCCGGGGCAGGCGC
AGGCCGTGGTGCCATCCTTCCCACACCTAACCCCCCTTTTTCCTCTGACT
CGCAAGGGCAAGCGCAACGTCCTCCATTTGATATTCCTGTACCTAATCCG
CTTGGTCCAATGGTGCCACCGGGGTATGGTGATTATGGGCGTCGTGGCGG
GGGGTTAGTTCCTGATTTTGAGGGAGATTTGCAGCCGGGGGGAGGATGGG
GAGGGCCCGGGGGAGGAAACCTGATGGGGCCCGGTCATCCTATTTTTACG
GGAGGGGGGGAGGGACGGATGGGTGAAGGAGGAGGGCTAGGCATACCTCA
GCCACGGTTCGATCCGTATGGGCCTGTGATTCCGCCAGGTAGGGGAGGGC
CGCCGATGCCACCGGGAAGGGGAGGGGTGATCGATCCTAACGATCCTCGG
GGACCTAGAAGAGCGTTTCGTGAACCAGATCCGGACCATTTGCCGCAGCC
TGGACCACCGGGGACCTTCAGCAGTGGTGGAGGAGGAGGCGGAGGAGGCG
GGGGAGGCGGGGGAGGAGGTGGGAATTTCTATTTTTAA
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Synonyms
Publications