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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:600129..601713 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G01940.1 vs.
Match: XP_005852726.1 (metallo-beta-lactamase domain-containing protein [Nannochloropsis gaditana CCMP526]; EKU23106.1 metallo-beta-lactamase domain-containing protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 307.4 bits (786), Expect = 6.500e-80 Identity = 143/177 (80.79%), Postives = 157/177 (88.70%), Query Frame = 0
Query: 217 MAAVKLRFDYLTNKPVYLNEAMGVLERPVSYLKFNVIETDADIDSGATDGVPVRALPVLHGGDYICLGFGVGRPGEFVYLSDVKNIPEKTMSYLKSLPKIKTLVVDCIKMTTGNFAHAAFEEVRGWVDELKPDKVWLVGMGCGIGEHDDANRRIH-EMGYPMVELAYDGLYVEGFSL 393
M AV+LRFDYLTN PVYL+EA GVLERP+SYLKFNVIE +A I+S A DGVPVRALPVLHGGDYICLGF VG PGEF+YLSDVK IP +TM YLK LP+IKTLVVDC+KM GNFAHAAFEEVR W+DELKP+KVWLVGMGCGIG+HD+ANR I EMGYPMVELAYDGLY+EGF L
Sbjct: 1 MQAVRLRFDYLTNPPVYLDEAKGVLERPISYLKFNVIEPNAVIESSAVDGVPVRALPVLHGGDYICLGFAVGPPGEFIYLSDVKEIPPETMQYLKDLPRIKTLVVDCLKMRAGNFAHAAFEEVREWIDELKPEKVWLVGMGCGIGDHDEANRVIQDEMGYPMVELAYDGLYLEGFRL 177
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G01940.1 ID=NO09G01940.1|Name=NO09G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1385bp ACAGTGCGTTCAGGCCACGCGCACTTTCGCATGCGCCCCGTCCTTCTCTC GGCGCTGCCAGTGGTCGTGGCGCCCCTGATTTTGGCGCTTTTGGCAGCAA GACACGTCAGCGGGTTTGGACACCGCGGCCTCGCCATGTCTACCTTCCTC GGCCCCTCGCGGCGTATTGGTACCAGCCGACGGCAGCCGCAGCGACAGCA GCACCAGCAGCACTTTCGACGTTGTAGTCCTCGTCTTGCCATGACAGCTA CGGGGGAAGACGAATGGGTCTTTGATGTGCTCTTTACGGGGACCGGACAA TCGTCATCCGTGCCATTGCTCAAGCACGCGGTCCGAGGGACGTGCAAGGT GTGCAACGACGCCTTGATGAGGCCGGGATCGAAAAACAAGCGCAATAATG TCTCCTGCGCTATTATCAAGCGGAAGAAGTCCACGCCCGTCGGCGAAACA CCACGGATCGCTGCACTGATCGACTGCGGCAAGACCTTCCGGGAAGTCGT GTTGAACCTGTTCCCCCGCTATGGACTACAAGAAGTAGGGGCATTGTTGC TAACGCATGGACATGCGGATGCTATTCTGGGGATGGATGATTTGAGAGAT TTGCAACTGTATGAACACGTCGACCCGGGGGTGAGGTTTCCCTCGGGGCC GATCAATGTGTTTTTGCATGAGGCGACCATGGCGGCGGTTAAATTACGGT TCGATTATTTGACAAATAAACCTGTCTATCTAAACGAGGCGATGGGAGTA TTGGAGCGACCGGTGTCGTATTTAAAGTTCAATGTAATTGAGACGGACGC GGACATTGATTCGGGCGCAACGGATGGGGTGCCTGTAAGAGCATTGCCTG TTTTGCATGGAGGGGACTATATTTGCTTAGGATTCGGGGTGGGAAGGCCG GGGGAGTTTGTGTATTTGTCGGATGTGAAGAATATCCCTGAAAAGACTAT GAGCTATTTGAAGTCTTTGCCGAAAATAAAGACGTTGGTGGTTGATTGCA TTAAAATGACCACAGGGAATTTTGCGCACGCGGCGTTCGAGGAAGTGAGG GGGTGGGTGGATGAATTGAAGCCGGACAAGGTGTGGTTGGTGGGGATGGG GTGTGGGATCGGGGAGCACGATGATGCAAATCGGAGGATACATGAGATGG GGTATCCGATGGTAGAGTTGGCGTATGACGGTCTTTACGTGGAGGGCTTT TCGCTGTAAAGTAGAAAGAAAAGGAAGGAGGGAGATAGGTAGAGTGCGAG GGGAGGGGACGCAGTATTAATAGATAAGTCGATGGTTTGCTACAGGATAA ATCTAGAAATGACATTTCGGTTTGATTGTGTTGAGATGAAAATGAAAATA AGAGCGTGGATCAAGAATGACCAATCACAGAGAAA back to topprotein sequence of NO09G01940.1 >NO09G01940.1-protein ID=NO09G01940.1-protein|Name=NO09G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp MRPVLLSALPVVVAPLILALLAARHVSGFGHRGLAMSTFLGPSRRIGTSR RQPQRQQHQQHFRRCSPRLAMTATGEDEWVFDVLFTGTGQSSSVPLLKHA VRGTCKVCNDALMRPGSKNKRNNVSCAIIKRKKSTPVGETPRIAALIDCG KTFREVVLNLFPRYGLQEVGALLLTHGHADAILGMDDLRDLQLYEHVDPG VRFPSGPINVFLHEATMAAVKLRFDYLTNKPVYLNEAMGVLERPVSYLKF NVIETDADIDSGATDGVPVRALPVLHGGDYICLGFGVGRPGEFVYLSDVK NIPEKTMSYLKSLPKIKTLVVDCIKMTTGNFAHAAFEEVRGWVDELKPDK VWLVGMGCGIGEHDDANRRIHEMGYPMVELAYDGLYVEGFSL* back to topmRNA from alignment at chr9:600129..601713- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G01940.1 ID=NO09G01940.1|Name=NO09G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp|location=Sequence derived from alignment at chr9:600129..601713- (Nannochloropsis oceanica) ACAGTGCGTTCAGGCCACGCGCACTTTCGCATGCGCCCCGTCCTTCTCTC
GGCGCTGCCAGTGGTCGTGGCGCCCCTGATTTTGGCGCTTTTGGCAGCAA
GACACGTCAGCGGGTTTGGACACCGCGGCCTCGCCATGTCTACCTTCCTC
GGCCCCTCGCGGCGTATTGGTACCAGCCGACGGCAGCCGCAGCGACAGCA
GCACCAGCAGCACTTTCGACGTTGTAGTCCTCGTCTTGCCATGACAGCTA
CGGGGGAAGACGAATGGGTCTTTGATGTGCTCTTTACGGGGACCGGACAA
TCGTCATCCGTGCCATTGCTCAAGCACGCGGTCCGAGGGACGTGCAAGGT
GTGCAACGACGCCTTGATGAGGCCGGGATCGAAAAACAAGTACGACGGGC
AGTGAATGGGATATTGGCGGGGCGACAGAAGGGAAAGACGAGAGTGAACT
ATGATAATGAATTATTCAATTTTGGGCCCCCTCCCTCCTCGCTTCCTCCC
TTGTGTCCTTTCTCCGCTGTATGTCAAATTTTACTTGCGTCTTATCTAAC
CCGTCCCCAAACCGAACTTCTTCCCACTTAAAAATGCAGGCGCAATAATG
TCTCCTGCGCTATTATCAAGCGGAAGAAGTCCACGCCCGTCGGCGAAACA
CCACGGATCGCTGCACTGATCGACTGCGGCAAGACCTTCCGGGAAGTCGT
GTTGAACCTGTTCCCCCGCTATGGACTACAAGAAGTAGGGGCATTGTTGC
TAACGCATGGACATGCGGATGCTATTCTGGGGATGGATGATTTGAGAGAT
TTGCAACTGTATGAACACGTCGACCCGGGGGTGAGGTTTCCCTCGGGGCC
GATCAATGTGTTTTTGCATGAGGCGACCATGGCGGCGGTTAAATTACGGT
TCGATTATTTGACAAATAAACCTGTCTATCTAAACGAGGCGATGGGAGTA
TTGGAGCGACCGGTGTCGTATTTAAAGTTCAATGTAATTGAGACGGACGC
GGACATTGATTCGGGCGCAACGGATGGGGTGCCTGTAAGAGCATTGCCTG
TTTTGCATGGAGGGGACTATATTTGCTTAGGATTCGGGGTGGGAAGGCCG
GGGGAGTTTGTGTATTTGTCGGATGTGAAGAATATCCCTGAAAAGACTAT
GAGCTATTTGAAGTCTTTGCCGAAAATAAAGACGTTGGTGGTTGATTGCA
TTAAAATGACCACAGGGAATTTTGCGCACGCGGCGTTCGAGGAAGTGAGG
GGGTGGGTGGATGAATTGAAGCCGGACAAGGTGTGGTTGGTGGGGATGGG
GTGTGGGATCGGGGAGCACGATGATGCAAATCGGAGGATACATGAGATGG
GGTATCCGATGGTAGAGTTGGCGTATGACGGTCTTTACGTGGAGGGCTTT
TCGCTGTAAAGTAGAAAGAAAAGGAAGGAGGGAGATAGGTAGAGTGCGAG
GGGAGGGGACGCAGTATTAATAGATAAGTCGATGGTTTGCTACAGGATAA
ATCTAGAAATGACATTTCGGTTTGATTGTGTTGAGATGAAAATGAAAATA
AGAGCGTGGATCAAGAATGACCAATCACAGAGAAA back to topCoding sequence (CDS) from alignment at chr9:600129..601713- >NO09G01940.1 ID=NO09G01940.1|Name=NO09G01940.1|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at chr9:600129..601713- (Nannochloropsis oceanica) ATGCGCCCCGTCCTTCTCTCGGCGCTGCCAGTGGTCGTGGCGCCCCTGAT TTTGGCGCTTTTGGCAGCAAGACACGTCAGCGGGTTTGGACACCGCGGCC TCGCCATGTCTACCTTCCTCGGCCCCTCGCGGCGTATTGGTACCAGCCGA CGGCAGCCGCAGCGACAGCAGCACCAGCAGCACTTTCGACGTTGTAGTCC TCGTCTTGCCATGACAGCTACGGGGGAAGACGAATGGGTCTTTGATGTGC TCTTTACGGGGACCGGACAATCGTCATCCGTGCCATTGCTCAAGCACGCG GTCCGAGGGACGTGCAAGGTGTGCAACGACGCCTTGATGAGGCCGGGATC GAAAAACAAGCGCAATAATGTCTCCTGCGCTATTATCAAGCGGAAGAAGT CCACGCCCGTCGGCGAAACACCACGGATCGCTGCACTGATCGACTGCGGC AAGACCTTCCGGGAAGTCGTGTTGAACCTGTTCCCCCGCTATGGACTACA AGAAGTAGGGGCATTGTTGCTAACGCATGGACATGCGGATGCTATTCTGG GGATGGATGATTTGAGAGATTTGCAACTGTATGAACACGTCGACCCGGGG GTGAGGTTTCCCTCGGGGCCGATCAATGTGTTTTTGCATGAGGCGACCAT GGCGGCGGTTAAATTACGGTTCGATTATTTGACAAATAAACCTGTCTATC TAAACGAGGCGATGGGAGTATTGGAGCGACCGGTGTCGTATTTAAAGTTC AATGTAATTGAGACGGACGCGGACATTGATTCGGGCGCAACGGATGGGGT GCCTGTAAGAGCATTGCCTGTTTTGCATGGAGGGGACTATATTTGCTTAG GATTCGGGGTGGGAAGGCCGGGGGAGTTTGTGTATTTGTCGGATGTGAAG AATATCCCTGAAAAGACTATGAGCTATTTGAAGTCTTTGCCGAAAATAAA GACGTTGGTGGTTGATTGCATTAAAATGACCACAGGGAATTTTGCGCACG CGGCGTTCGAGGAAGTGAGGGGGTGGGTGGATGAATTGAAGCCGGACAAG GTGTGGTTGGTGGGGATGGGGTGTGGGATCGGGGAGCACGATGATGCAAA TCGGAGGATACATGAGATGGGGTATCCGATGGTAGAGTTGGCGTATGACG GTCTTTACGTGGAGGGCTTTTCGCTGTAA back to top
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