NO09G01890.2, NO09G01890.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01890.2
Unique NameNO09G01890.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length991
Alignment locationchr9:588865..589940 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:588865..589940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01890.2 vs.
Match: EWM27610.1 (PsbQ-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 260.0 bits (663), Expect = 5.400e-66
Identity = 134/177 (75.71%), Postives = 156/177 (88.14%), Query Frame = 0 
Query:    2 ERREVLQYSATALSAMGALGSLLASFPSAAGAASPVISELKIRESVKGVKDSVEALKLYEDFVSTKDYYGIKKSLRVPPVSEIRRDCRRIIAGLDGPIKKDTDKAYNQFIENLEQVDFLATKAIQNDNKAGDKELAQMAARFTDAQVKLQKVLELISTTRYATEPVSVRLETASTEL 179
            ERRE++  + TAL A+GA GS+L S PS AGAASPVISE+KIRESVKGVKDSVEALKLYEDFV+TKD+YG+KKSLRVPPVS+IRRDCRRIIAGL+G +KKDTDKAY++FI +LEQVD LATKAIQND K  D+ELAQ+ ARF +AQ +L KVL+L+ TTRYATEPV+VRLET  TEL
Sbjct:   65 ERRELIHTATTALGAIGAFGSILLSLPSVAGAASPVISEIKIRESVKGVKDSVEALKLYEDFVNTKDFYGVKKSLRVPPVSDIRRDCRRIIAGLEGSVKKDTDKAYSEFIVSLEQVDLLATKAIQNDQKIKDEELAQLTARFAEAQARLDKVLKLVLTTRYATEPVNVRLETEKTEL 241
The following BLAST results are available for this feature:
BLAST of NO09G01890.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27610.15.400e-6675.71PsbQ-like domain protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01890NO09G01890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01890.2NO09G01890.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01890.2.cds1NO09G01890.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01890.2.cds2NO09G01890.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01890.2 ID=NO09G01890.2|Name=NO09G01890.2|organism=Nannochloropsis oceanica|type=mRNA|length=991bp
CCACAGCCACGTTTCTACCGCGCTCTCCCCCATCAGTTGCCCACAGTCCC
ATCATCATGCGCATCATCGTCATTGCGGCCTTCGTAGCTGGTACGTCGAA
GGGAAAAAGCTTCCAACCCCCTTTCCGATGGCCTTATTTTTCCGCGTTGC
TTGAATACAAACACAGCCACGACCACGGCCTTCCAGCTCCCCTTGAACTT
CCGCAGCCCTTCCCCTCGGACACAACCACTGGCGGCCTCTCGTAACGACG
ACAACGGCATGGAGAGAAGAGAAGTGCTCCAGTATTCTGCCACCGCATTG
AGTGCCATGGGTGCCTTGGGTAGCCTCCTCGCTTCTTTCCCCAGCGCGGC
CGGTGCTGCCTCCCCTGTTATAAGCGAGCTCAAAATTCGGGAGAGTGTCA
AGGGGGTTAAAGATAGCGTGGAAGCTTTAAAGCTGTATGAAGATTTTGTG
TCCACTAAGGATTATTATGGTATTAAGAAGTCGTTGCGAGTTCCCCCCGT
TTCGGAAATTCGAAGGGATTGCCGGCGCATCATTGCTGGGTTGGACGGCC
CTATCAAAAAGGACACCGACAAGGCTTATAATCAATTTATTGAAAATCTG
GAACAAGTCGACTTCCTTGCTACCAAAGCAATTCAAAATGATAATAAAGC
GGGAGATAAAGAGCTGGCGCAGATGGCTGCAAGATTCACGGATGCCCAAG
TGAAGCTCCAGAAAGTGTTGGAATTGATTTCGACTACGCGTTATGCGACC
GAGCCCGTGAGTGTTCGGTTGGAAACAGCCAGCACAGAGCTTTAATGCTG
GTTGGAAAAATGGTGAGAATACGTACAATGCGTGTGCGTGCGTGCTTGGA
TAGGAGGATGTAGATTTACTTCTTGAAAGAGGAAGAAAAGGAAGAGGAAG
AATAATGATAATGAGTAGAATAATTACGAGAAGAAAATGAAATGAAAGCC
ACACCTACTTTTCAAAAGCGGGAAAAGGAGGAAAGGAGAAT
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protein sequence of NO09G01890.2

>NO09G01890.2-protein ID=NO09G01890.2-protein|Name=NO09G01890.2|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MERREVLQYSATALSAMGALGSLLASFPSAAGAASPVISELKIRESVKGV
KDSVEALKLYEDFVSTKDYYGIKKSLRVPPVSEIRRDCRRIIAGLDGPIK
KDTDKAYNQFIENLEQVDFLATKAIQNDNKAGDKELAQMAARFTDAQVKL
QKVLELISTTRYATEPVSVRLETASTEL*
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mRNA from alignment at chr9:588865..589940-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01890.2 ID=NO09G01890.2|Name=NO09G01890.2|organism=Nannochloropsis oceanica|type=mRNA|length=1076bp|location=Sequence derived from alignment at chr9:588865..589940- (Nannochloropsis oceanica)
CCACAGCCACGTTTCTACCGCGCTCTCCCCCATCAGTTGCCCACAGTCCC
ATCATCATGCGCATCATCGTCATTGCGGCCTTCGTAGCTGGTACGTCGAA
GGGAAAAAGCTTCCAACCCCCTTTCCGATGGCCTTATTTTTCCGCGTTGC
TTGAATACAAACACAGCCACGACCACGGCCTTCCAGCTCCCCTTGAACTT
CCGCAGCCCTTCCCCTCGGACACAACCACTGGCGGCCTCTCGTAACGACG
ACAACGGCATGGAGAGAAGGTACGTGGCGGATAGGTTCCCCCCCCCCCCC
CCCTTTAAACACACACGCTTCCATTCTTGTCCCACCTACCTTGTTCATCC
ATAGAGAAGTGCTCCAGTATTCTGCCACCGCATTGAGTGCCATGGGTGCC
TTGGGTAGCCTCCTCGCTTCTTTCCCCAGCGCGGCCGGTGCTGCCTCCCC
TGTTATAAGCGAGCTCAAAATTCGGGAGAGTGTCAAGGGGGTTAAAGATA
GCGTGGAAGCTTTAAAGCTGTATGAAGATTTTGTGTCCACTAAGGATTAT
TATGGTATTAAGAAGTCGTTGCGAGTTCCCCCCGTTTCGGAAATTCGAAG
GGATTGCCGGCGCATCATTGCTGGGTTGGACGGCCCTATCAAAAAGGACA
CCGACAAGGCTTATAATCAATTTATTGAAAATCTGGAACAAGTCGACTTC
CTTGCTACCAAAGCAATTCAAAATGATAATAAAGCGGGAGATAAAGAGCT
GGCGCAGATGGCTGCAAGATTCACGGATGCCCAAGTGAAGCTCCAGAAAG
TGTTGGAATTGATTTCGACTACGCGTTATGCGACCGAGCCCGTGAGTGTT
CGGTTGGAAACAGCCAGCACAGAGCTTTAATGCTGGTTGGAAAAATGGTG
AGAATACGTACAATGCGTGTGCGTGCGTGCTTGGATAGGAGGATGTAGAT
TTACTTCTTGAAAGAGGAAGAAAAGGAAGAGGAAGAATAATGATAATGAG
TAGAATAATTACGAGAAGAAAATGAAATGAAAGCCACACCTACTTTTCAA
AAGCGGGAAAAGGAGGAAAGGAGAAT
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Coding sequence (CDS) from alignment at chr9:588865..589940-

>NO09G01890.2 ID=NO09G01890.2|Name=NO09G01890.2|organism=Nannochloropsis oceanica|type=CDS|length=537bp|location=Sequence derived from alignment at chr9:588865..589940- (Nannochloropsis oceanica)
ATGGAGAGAAGAGAAGTGCTCCAGTATTCTGCCACCGCATTGAGTGCCAT
GGGTGCCTTGGGTAGCCTCCTCGCTTCTTTCCCCAGCGCGGCCGGTGCTG
CCTCCCCTGTTATAAGCGAGCTCAAAATTCGGGAGAGTGTCAAGGGGGTT
AAAGATAGCGTGGAAGCTTTAAAGCTGTATGAAGATTTTGTGTCCACTAA
GGATTATTATGGTATTAAGAAGTCGTTGCGAGTTCCCCCCGTTTCGGAAA
TTCGAAGGGATTGCCGGCGCATCATTGCTGGGTTGGACGGCCCTATCAAA
AAGGACACCGACAAGGCTTATAATCAATTTATTGAAAATCTGGAACAAGT
CGACTTCCTTGCTACCAAAGCAATTCAAAATGATAATAAAGCGGGAGATA
AAGAGCTGGCGCAGATGGCTGCAAGATTCACGGATGCCCAAGTGAAGCTC
CAGAAAGTGTTGGAATTGATTTCGACTACGCGTTATGCGACCGAGCCCGT
GAGTGTTCGGTTGGAAACAGCCAGCACAGAGCTTTAA
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Synonyms
Publications