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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:550002..552608 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G01770.1 vs.
Match: XP_005853611.1 (dna repair protein rad51, partial [Nannochloropsis gaditana CCMP526]; EKU22750.1 dna repair protein rad51, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 210.7 bits (535), Expect = 1.500e-50 Identity = 183/497 (36.82%), Postives = 249/497 (50.10%), Query Frame = 0
Query: 10 DALCDTLRALTAQALQQGGHRLIDAITKDLRNMVGQFLQSQESIPTPSMLHSSTSDEPLASATT---LQKKHQFPQRALSKVLRRKLLVDVDTLRAAYASSRGGMVGSSSGVPFSDPSTVLSARVPGLSSHTGLVRELQLQALLHFSLGTMGLMHAKQDASSSSPLSCSSSTLSLSPSLLRRVHRFLADLQLRQTFSLGTGGTRELQRDEDGSLLQRASNVVTISQSSGSSMMGSTGVGEEEDAPAVYDKQGEKT---------GEKEEGREGGNENDTEATTLGRHSSHPTHLLDTSFDRFLATAFLAPFRASHPQALLALYTALECEELLPADLL---AAGAAADGPN---KGPLDDILLLEDRDQTAISKRRPVFRRLLHRENAATSGFISAYATRTQERAERSTRQSAGESQALENVVDPNRKPTGGATGTGAKPLPTQLPIPPLSS---STVLQQALTDSQRAHPSHYMTRINSFRKPTNLSRRPSLPLGQQ 486
DALC LR + ++ALQ+GG RL+DA T+D R ++G +L ++ +PS SS + + + + L K L+ K+LVD+ L+ YA V ++ ++ R L +RELQLQA+L F +GTMGL+ ++ ++SS C L S LL+ VH FLA LQLRQTF+LG G R ++ LL + G+ G G + P D++ E+ G+ G + G E D + H T +LD++F FLA AFL PFRASHPQ +LALYT+LECEELL AD L AAGAAA KG + + PVF R L R+ AA SGF+SAY R + +R T+ +A P G A + P++ P PP SS S+VLQQA+ +S R PSHY++RINSF KP LSRRP L QQ
Sbjct: 226 DALCQVLRGMMSEALQEGGQRLVDAATQDFRALIGDYLGTEAVYVSPSQ--SSVGADLITGFDKNKYIATRRHLNLHRLRKALQDKILVDIGALQEDYACGGTARGLWKFQVETTEKGLAVNRRKRSLPMDLLRIRELQLQAMLRFVMGTMGLLGTRRPSASS----CIRPPLPTS--LLKDVHHFLAYLQLRQTFALGAEGMRGFRQAGGDPLLH---------PNKGTPHNAPVGRGVSTETPD-QDRRAERPCPHASGYCMGDMGGGAQEGLEQDVDGEEACPHGMQATRVLDSNFHEFLAAAFLKPFRASHPQDILALYTSLECEELLSADFLAEAAAGAAAATTRSVAKG-------------VSPKPKGPVF-RCLRRDKAAASGFVSAYNKRREVPVDR-TKAAA-------------TMPVGPAKSMISGEAPSRPPTPPPSSPSGSSVLQQAMRESLRPRPSHYLSRINSFHKPNQLSRRPLLSRQQQ 676
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G01770.1 ID=NO09G01770.1|Name=NO09G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2607bp ACAGTTATCCTGGGCACGCACCCCGAAATCCCAGGGAAGTGGCGGTCCAT TCCACACCCGAGAGGACTCTTCGTTTCCTCCATCATTCATGGCGTCTACC GCGACCATGTCCCCCGACGCGCTTTGCGACACGCTCCGAGCGCTCACGGC GCAAGCACTGCAACAAGGAGGACACCGCCTTATTGATGCCATCACGAAGG ATCTCCGTAATATGGTTGGCCAGTTTCTTCAAAGCCAGGAGAGCATTCCC ACCCCAAGCATGCTGCATTCTTCGACATCTGACGAGCCTCTGGCTTCCGC CACCACTTTGCAGAAGAAGCATCAGTTCCCCCAGAGAGCCCTAAGCAAGG TACTCCGGCGCAAGTTGTTGGTAGACGTGGACACGCTGCGAGCAGCCTAC GCATCGAGTCGTGGAGGCATGGTCGGCAGTAGCAGTGGCGTCCCCTTCAG TGACCCCTCTACTGTGTTGAGCGCCCGTGTTCCAGGTCTCTCATCACATA CAGGATTGGTCCGGGAGCTGCAACTCCAGGCATTATTACATTTTTCGTTG GGAACGATGGGCCTGATGCACGCGAAGCAAGATGCTTCCTCCTCCTCGCC CTTGTCCTGTTCGTCTTCGACCCTCTCCCTCTCTCCCTCCTTGCTTAGAC GCGTGCATCGTTTTTTAGCCGACCTACAGCTTCGACAAACCTTCTCACTC GGTACTGGTGGTACCAGAGAATTACAGAGAGATGAGGATGGTTCCTTATT GCAAAGGGCCAGCAACGTCGTCACTATCAGTCAGAGCAGCGGGAGCAGCA TGATGGGAAGCACAGGTGTGGGCGAGGAGGAAGACGCTCCAGCTGTCTAC GACAAACAGGGGGAGAAGACAGGCGAAAAGGAAGAGGGCCGGGAGGGGGG AAACGAGAACGACACAGAAGCCACCACACTGGGTCGGCATTCGTCACATC CCACCCACCTGCTCGACACGTCGTTCGACCGTTTCCTGGCAACGGCTTTT CTGGCTCCCTTCCGCGCTTCCCACCCTCAGGCCTTGCTTGCCCTGTACAC AGCCCTCGAATGCGAAGAACTCTTGCCTGCCGACCTATTGGCAGCAGGAG CAGCAGCCGATGGCCCCAACAAGGGCCCGCTGGACGACATACTGCTGCTC GAAGATCGAGACCAGACAGCCATTTCCAAGCGTCGCCCCGTTTTCCGTCG GCTCCTCCATCGTGAAAACGCCGCAACCTCCGGCTTCATCTCCGCCTACG CCACCCGCACCCAAGAACGTGCCGAGCGAAGCACCCGTCAATCTGCGGGA GAATCTCAAGCACTCGAAAACGTTGTGGACCCCAACCGGAAACCCACCGG CGGCGCTACTGGAACAGGAGCTAAACCACTACCCACCCAGCTTCCCATCC CCCCCCTTTCGAGCAGTACGGTTCTGCAGCAGGCTCTCACAGACAGTCAA CGGGCCCATCCCAGTCATTACATGACACGTATCAATAGCTTCCGGAAACC CACAAACCTCTCTCGTCGTCCCTCCCTTCCTCTTGGCCAGCAGTACCACC ACCACCACCAGCACCAGCACCGCCAAGAACAAGAACAAGAGCAGCAGCAA ATGCATCCACAAACAGGGAATCAGCGTGCCACAGCCATGGCTTTGAAACA AACGCGGTCCGCGGAACCTGAAGCAGCAACAACAAAAGGAGCAGCAAGAG GGGTGCTTTCGTCCACCGCCACCACCTACCGTTCCTTCTCCTCCTCCTCT TCTTCTTTCGCTTCCTCGTCTTCGACCTCCTCGTCGATCATTAAACGGGC CCCCGTGGGTGGGTTAGAGAAAAAACGATGTCGACAAGGTCAGAATCATG GCAATGGCAAGAGTGGAGAATGGAGGACGGACAAGAAGGAAAGCCTCGAT GGAAGAGGGACAAAGAGAAGACAAGGAGGCGGAGGAAAAGGATATGTAGA AGTGAGTGAAGGAGGCGGAAGACGAGAAAGCTCATCTGTAGTTCAGAAAT TCACTCCCACGGTTTGTAGCGGACGCCCCAATTTTAGCAGCAGCAGCAGC AGTGATAAGAACGACAGTACGAGCAGCAGGATGGGATCGGTAGATGCGAC TATATTAGGAACTCCCCCGCCATCCTTGAGGAAGAAACGACCGGGAGGAG GTGTAAGAGGAGACGGAAGGGGAGGAGGAGCTGTGGTTGCAGGAACACCA GAGGCGGTGGGCAGAAATGTGCGGGCGAAGCGGACGACTGTTGCGGAGTC GCCTCAAGGCTAGGGGGGGGGGAGAAGGAGGAGATGGAGGAGGAAGACGA GGAGGAGAGAAGGAAGGGGGGGAAGGAGAACGACGAGGAGGACTATGGGG AGGAGGAAGAAGAAGAAAGGGGATGGGGAAGAAAGGAGGAAGGGGAGGAG GCCAGGTGCATGCCTACTGAAGCAGCGTTGGAGATGCAGATTCCACCTCA GACAAGGAGTAGGATGTGATGCAATACGACCTCAGGGAAACATACAAGAG GTGATGGCATATGACGATCAGAAGAGGTCAAAAGCATCAAAATGTCGACT CCCGTATCCCGTAGTAATCTGGATGAAAAAGCAAATAAAAAAACCTTTAA AAAGAAG back to topprotein sequence of NO09G01770.1 >NO09G01770.1-protein ID=NO09G01770.1-protein|Name=NO09G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=725bp MASTATMSPDALCDTLRALTAQALQQGGHRLIDAITKDLRNMVGQFLQSQ ESIPTPSMLHSSTSDEPLASATTLQKKHQFPQRALSKVLRRKLLVDVDTL RAAYASSRGGMVGSSSGVPFSDPSTVLSARVPGLSSHTGLVRELQLQALL HFSLGTMGLMHAKQDASSSSPLSCSSSTLSLSPSLLRRVHRFLADLQLRQ TFSLGTGGTRELQRDEDGSLLQRASNVVTISQSSGSSMMGSTGVGEEEDA PAVYDKQGEKTGEKEEGREGGNENDTEATTLGRHSSHPTHLLDTSFDRFL ATAFLAPFRASHPQALLALYTALECEELLPADLLAAGAAADGPNKGPLDD ILLLEDRDQTAISKRRPVFRRLLHRENAATSGFISAYATRTQERAERSTR QSAGESQALENVVDPNRKPTGGATGTGAKPLPTQLPIPPLSSSTVLQQAL TDSQRAHPSHYMTRINSFRKPTNLSRRPSLPLGQQYHHHHQHQHRQEQEQ EQQQMHPQTGNQRATAMALKQTRSAEPEAATTKGAARGVLSSTATTYRSF SSSSSSFASSSSTSSSIIKRAPVGGLEKKRCRQGQNHGNGKSGEWRTDKK ESLDGRGTKRRQGGGGKGYVEVSEGGGRRESSSVVQKFTPTVCSGRPNFS SSSSSDKNDSTSSRMGSVDATILGTPPPSLRKKRPGGGVRGDGRGGGAVV AGTPEAVGRNVRAKRTTVAESPQG* back to topmRNA from alignment at chr9:550002..552608+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G01770.1 ID=NO09G01770.1|Name=NO09G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2607bp|location=Sequence derived from alignment at chr9:550002..552608+ (Nannochloropsis oceanica) ACAGTTATCCTGGGCACGCACCCCGAAATCCCAGGGAAGTGGCGGTCCAT
TCCACACCCGAGAGGACTCTTCGTTTCCTCCATCATTCATGGCGTCTACC
GCGACCATGTCCCCCGACGCGCTTTGCGACACGCTCCGAGCGCTCACGGC
GCAAGCACTGCAACAAGGAGGACACCGCCTTATTGATGCCATCACGAAGG
ATCTCCGTAATATGGTTGGCCAGTTTCTTCAAAGCCAGGAGAGCATTCCC
ACCCCAAGCATGCTGCATTCTTCGACATCTGACGAGCCTCTGGCTTCCGC
CACCACTTTGCAGAAGAAGCATCAGTTCCCCCAGAGAGCCCTAAGCAAGG
TACTCCGGCGCAAGTTGTTGGTAGACGTGGACACGCTGCGAGCAGCCTAC
GCATCGAGTCGTGGAGGCATGGTCGGCAGTAGCAGTGGCGTCCCCTTCAG
TGACCCCTCTACTGTGTTGAGCGCCCGTGTTCCAGGTCTCTCATCACATA
CAGGATTGGTCCGGGAGCTGCAACTCCAGGCATTATTACATTTTTCGTTG
GGAACGATGGGCCTGATGCACGCGAAGCAAGATGCTTCCTCCTCCTCGCC
CTTGTCCTGTTCGTCTTCGACCCTCTCCCTCTCTCCCTCCTTGCTTAGAC
GCGTGCATCGTTTTTTAGCCGACCTACAGCTTCGACAAACCTTCTCACTC
GGTACTGGTGGTACCAGAGAATTACAGAGAGATGAGGATGGTTCCTTATT
GCAAAGGGCCAGCAACGTCGTCACTATCAGTCAGAGCAGCGGGAGCAGCA
TGATGGGAAGCACAGGTGTGGGCGAGGAGGAAGACGCTCCAGCTGTCTAC
GACAAACAGGGGGAGAAGACAGGCGAAAAGGAAGAGGGCCGGGAGGGGGG
AAACGAGAACGACACAGAAGCCACCACACTGGGTCGGCATTCGTCACATC
CCACCCACCTGCTCGACACGTCGTTCGACCGTTTCCTGGCAACGGCTTTT
CTGGCTCCCTTCCGCGCTTCCCACCCTCAGGCCTTGCTTGCCCTGTACAC
AGCCCTCGAATGCGAAGAACTCTTGCCTGCCGACCTATTGGCAGCAGGAG
CAGCAGCCGATGGCCCCAACAAGGGCCCGCTGGACGACATACTGCTGCTC
GAAGATCGAGACCAGACAGCCATTTCCAAGCGTCGCCCCGTTTTCCGTCG
GCTCCTCCATCGTGAAAACGCCGCAACCTCCGGCTTCATCTCCGCCTACG
CCACCCGCACCCAAGAACGTGCCGAGCGAAGCACCCGTCAATCTGCGGGA
GAATCTCAAGCACTCGAAAACGTTGTGGACCCCAACCGGAAACCCACCGG
CGGCGCTACTGGAACAGGAGCTAAACCACTACCCACCCAGCTTCCCATCC
CCCCCCTTTCGAGCAGTACGGTTCTGCAGCAGGCTCTCACAGACAGTCAA
CGGGCCCATCCCAGTCATTACATGACACGTATCAATAGCTTCCGGAAACC
CACAAACCTCTCTCGTCGTCCCTCCCTTCCTCTTGGCCAGCAGTACCACC
ACCACCACCAGCACCAGCACCGCCAAGAACAAGAACAAGAGCAGCAGCAA
ATGCATCCACAAACAGGGAATCAGCGTGCCACAGCCATGGCTTTGAAACA
AACGCGGTCCGCGGAACCTGAAGCAGCAACAACAAAAGGAGCAGCAAGAG
GGGTGCTTTCGTCCACCGCCACCACCTACCGTTCCTTCTCCTCCTCCTCT
TCTTCTTTCGCTTCCTCGTCTTCGACCTCCTCGTCGATCATTAAACGGGC
CCCCGTGGGTGGGTTAGAGAAAAAACGATGTCGACAAGGTCAGAATCATG
GCAATGGCAAGAGTGGAGAATGGAGGACGGACAAGAAGGAAAGCCTCGAT
GGAAGAGGGACAAAGAGAAGACAAGGAGGCGGAGGAAAAGGATATGTAGA
AGTGAGTGAAGGAGGCGGAAGACGAGAAAGCTCATCTGTAGTTCAGAAAT
TCACTCCCACGGTTTGTAGCGGACGCCCCAATTTTAGCAGCAGCAGCAGC
AGTGATAAGAACGACAGTACGAGCAGCAGGATGGGATCGGTAGATGCGAC
TATATTAGGAACTCCCCCGCCATCCTTGAGGAAGAAACGACCGGGAGGAG
GTGTAAGAGGAGACGGAAGGGGAGGAGGAGCTGTGGTTGCAGGAACACCA
GAGGCGGTGGGCAGAAATGTGCGGGCGAAGCGGACGACTGTTGCGGAGTC
GCCTCAAGGCTAGGGGGGGGGGAGAAGGAGGAGATGGAGGAGGAAGACGA
GGAGGAGAGAAGGAAGGGGGGGAAGGAGAACGACGAGGAGGACTATGGGG
AGGAGGAAGAAGAAGAAAGGGGATGGGGAAGAAAGGAGGAAGGGGAGGAG
GCCAGGTGCATGCCTACTGAAGCAGCGTTGGAGATGCAGATTCCACCTCA
GACAAGGAGTAGGATGTGATGCAATACGACCTCAGGGAAACATACAAGAG
GTGATGGCATATGACGATCAGAAGAGGTCAAAAGCATCAAAATGTCGACT
CCCGTATCCCGTAGTAATCTGGATGAAAAAGCAAATAAAAAAACCTTTAA
AAAGAAG back to topCoding sequence (CDS) from alignment at chr9:550002..552608+ >NO09G01770.1 ID=NO09G01770.1|Name=NO09G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=2175bp|location=Sequence derived from alignment at chr9:550002..552608+ (Nannochloropsis oceanica) ATGGCGTCTACCGCGACCATGTCCCCCGACGCGCTTTGCGACACGCTCCG AGCGCTCACGGCGCAAGCACTGCAACAAGGAGGACACCGCCTTATTGATG CCATCACGAAGGATCTCCGTAATATGGTTGGCCAGTTTCTTCAAAGCCAG GAGAGCATTCCCACCCCAAGCATGCTGCATTCTTCGACATCTGACGAGCC TCTGGCTTCCGCCACCACTTTGCAGAAGAAGCATCAGTTCCCCCAGAGAG CCCTAAGCAAGGTACTCCGGCGCAAGTTGTTGGTAGACGTGGACACGCTG CGAGCAGCCTACGCATCGAGTCGTGGAGGCATGGTCGGCAGTAGCAGTGG CGTCCCCTTCAGTGACCCCTCTACTGTGTTGAGCGCCCGTGTTCCAGGTC TCTCATCACATACAGGATTGGTCCGGGAGCTGCAACTCCAGGCATTATTA CATTTTTCGTTGGGAACGATGGGCCTGATGCACGCGAAGCAAGATGCTTC CTCCTCCTCGCCCTTGTCCTGTTCGTCTTCGACCCTCTCCCTCTCTCCCT CCTTGCTTAGACGCGTGCATCGTTTTTTAGCCGACCTACAGCTTCGACAA ACCTTCTCACTCGGTACTGGTGGTACCAGAGAATTACAGAGAGATGAGGA TGGTTCCTTATTGCAAAGGGCCAGCAACGTCGTCACTATCAGTCAGAGCA GCGGGAGCAGCATGATGGGAAGCACAGGTGTGGGCGAGGAGGAAGACGCT CCAGCTGTCTACGACAAACAGGGGGAGAAGACAGGCGAAAAGGAAGAGGG CCGGGAGGGGGGAAACGAGAACGACACAGAAGCCACCACACTGGGTCGGC ATTCGTCACATCCCACCCACCTGCTCGACACGTCGTTCGACCGTTTCCTG GCAACGGCTTTTCTGGCTCCCTTCCGCGCTTCCCACCCTCAGGCCTTGCT TGCCCTGTACACAGCCCTCGAATGCGAAGAACTCTTGCCTGCCGACCTAT TGGCAGCAGGAGCAGCAGCCGATGGCCCCAACAAGGGCCCGCTGGACGAC ATACTGCTGCTCGAAGATCGAGACCAGACAGCCATTTCCAAGCGTCGCCC CGTTTTCCGTCGGCTCCTCCATCGTGAAAACGCCGCAACCTCCGGCTTCA TCTCCGCCTACGCCACCCGCACCCAAGAACGTGCCGAGCGAAGCACCCGT CAATCTGCGGGAGAATCTCAAGCACTCGAAAACGTTGTGGACCCCAACCG GAAACCCACCGGCGGCGCTACTGGAACAGGAGCTAAACCACTACCCACCC AGCTTCCCATCCCCCCCCTTTCGAGCAGTACGGTTCTGCAGCAGGCTCTC ACAGACAGTCAACGGGCCCATCCCAGTCATTACATGACACGTATCAATAG CTTCCGGAAACCCACAAACCTCTCTCGTCGTCCCTCCCTTCCTCTTGGCC AGCAGTACCACCACCACCACCAGCACCAGCACCGCCAAGAACAAGAACAA GAGCAGCAGCAAATGCATCCACAAACAGGGAATCAGCGTGCCACAGCCAT GGCTTTGAAACAAACGCGGTCCGCGGAACCTGAAGCAGCAACAACAAAAG GAGCAGCAAGAGGGGTGCTTTCGTCCACCGCCACCACCTACCGTTCCTTC TCCTCCTCCTCTTCTTCTTTCGCTTCCTCGTCTTCGACCTCCTCGTCGAT CATTAAACGGGCCCCCGTGGGTGGGTTAGAGAAAAAACGATGTCGACAAG GTCAGAATCATGGCAATGGCAAGAGTGGAGAATGGAGGACGGACAAGAAG GAAAGCCTCGATGGAAGAGGGACAAAGAGAAGACAAGGAGGCGGAGGAAA AGGATATGTAGAAGTGAGTGAAGGAGGCGGAAGACGAGAAAGCTCATCTG TAGTTCAGAAATTCACTCCCACGGTTTGTAGCGGACGCCCCAATTTTAGC AGCAGCAGCAGCAGTGATAAGAACGACAGTACGAGCAGCAGGATGGGATC GGTAGATGCGACTATATTAGGAACTCCCCCGCCATCCTTGAGGAAGAAAC GACCGGGAGGAGGTGTAAGAGGAGACGGAAGGGGAGGAGGAGCTGTGGTT GCAGGAACACCAGAGGCGGTGGGCAGAAATGTGCGGGCGAAGCGGACGAC TGTTGCGGAGTCGCCTCAAGGCTAG back to top
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