NO09G01770.1, NO09G01770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01770.1
Unique NameNO09G01770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2607
Alignment locationchr9:550002..552608 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:550002..552608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G01770.1 vs.
Match: XP_005853611.1 (dna repair protein rad51, partial [Nannochloropsis gaditana CCMP526]; EKU22750.1 dna repair protein rad51, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 210.7 bits (535), Expect = 1.500e-50
Identity = 183/497 (36.82%), Postives = 249/497 (50.10%), Query Frame = 0
Query:   10 DALCDTLRALTAQALQQGGHRLIDAITKDLRNMVGQFLQSQESIPTPSMLHSSTSDEPLASATT---LQKKHQFPQRALSKVLRRKLLVDVDTLRAAYASSRGGMVGSSSGVPFSDPSTVLSARVPGLSSHTGLVRELQLQALLHFSLGTMGLMHAKQDASSSSPLSCSSSTLSLSPSLLRRVHRFLADLQLRQTFSLGTGGTRELQRDEDGSLLQRASNVVTISQSSGSSMMGSTGVGEEEDAPAVYDKQGEKT---------GEKEEGREGGNENDTEATTLGRHSSHPTHLLDTSFDRFLATAFLAPFRASHPQALLALYTALECEELLPADLL---AAGAAADGPN---KGPLDDILLLEDRDQTAISKRRPVFRRLLHRENAATSGFISAYATRTQERAERSTRQSAGESQALENVVDPNRKPTGGATGTGAKPLPTQLPIPPLSS---STVLQQALTDSQRAHPSHYMTRINSFRKPTNLSRRPSLPLGQQ 486
            DALC  LR + ++ALQ+GG RL+DA T+D R ++G +L ++    +PS   SS   + +        +  +       L K L+ K+LVD+  L+  YA            V  ++    ++ R   L      +RELQLQA+L F +GTMGL+  ++ ++SS    C    L  S  LL+ VH FLA LQLRQTF+LG  G R  ++     LL           + G+      G G   + P   D++ E+          G+   G + G E D +      H    T +LD++F  FLA AFL PFRASHPQ +LALYT+LECEELL AD L   AAGAAA       KG              +   + PVF R L R+ AA SGF+SAY  R +   +R T+ +A               P G A    +   P++ P PP SS   S+VLQQA+ +S R  PSHY++RINSF KP  LSRRP L   QQ
Sbjct:  226 DALCQVLRGMMSEALQEGGQRLVDAATQDFRALIGDYLGTEAVYVSPSQ--SSVGADLITGFDKNKYIATRRHLNLHRLRKALQDKILVDIGALQEDYACGGTARGLWKFQVETTEKGLAVNRRKRSLPMDLLRIRELQLQAMLRFVMGTMGLLGTRRPSASS----CIRPPLPTS--LLKDVHHFLAYLQLRQTFALGAEGMRGFRQAGGDPLLH---------PNKGTPHNAPVGRGVSTETPD-QDRRAERPCPHASGYCMGDMGGGAQEGLEQDVDGEEACPHGMQATRVLDSNFHEFLAAAFLKPFRASHPQDILALYTSLECEELLSADFLAEAAAGAAAATTRSVAKG-------------VSPKPKGPVF-RCLRRDKAAASGFVSAYNKRREVPVDR-TKAAA-------------TMPVGPAKSMISGEAPSRPPTPPPSSPSGSSVLQQAMRESLRPRPSHYLSRINSFHKPNQLSRRPLLSRQQQ 676          
The following BLAST results are available for this feature:
BLAST of NO09G01770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853611.11.500e-5036.82dna repair protein rad51, partial [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01770NO09G01770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01770.1NO09G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01770.1.cds1NO09G01770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01770.1 ID=NO09G01770.1|Name=NO09G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2607bp
ACAGTTATCCTGGGCACGCACCCCGAAATCCCAGGGAAGTGGCGGTCCAT
TCCACACCCGAGAGGACTCTTCGTTTCCTCCATCATTCATGGCGTCTACC
GCGACCATGTCCCCCGACGCGCTTTGCGACACGCTCCGAGCGCTCACGGC
GCAAGCACTGCAACAAGGAGGACACCGCCTTATTGATGCCATCACGAAGG
ATCTCCGTAATATGGTTGGCCAGTTTCTTCAAAGCCAGGAGAGCATTCCC
ACCCCAAGCATGCTGCATTCTTCGACATCTGACGAGCCTCTGGCTTCCGC
CACCACTTTGCAGAAGAAGCATCAGTTCCCCCAGAGAGCCCTAAGCAAGG
TACTCCGGCGCAAGTTGTTGGTAGACGTGGACACGCTGCGAGCAGCCTAC
GCATCGAGTCGTGGAGGCATGGTCGGCAGTAGCAGTGGCGTCCCCTTCAG
TGACCCCTCTACTGTGTTGAGCGCCCGTGTTCCAGGTCTCTCATCACATA
CAGGATTGGTCCGGGAGCTGCAACTCCAGGCATTATTACATTTTTCGTTG
GGAACGATGGGCCTGATGCACGCGAAGCAAGATGCTTCCTCCTCCTCGCC
CTTGTCCTGTTCGTCTTCGACCCTCTCCCTCTCTCCCTCCTTGCTTAGAC
GCGTGCATCGTTTTTTAGCCGACCTACAGCTTCGACAAACCTTCTCACTC
GGTACTGGTGGTACCAGAGAATTACAGAGAGATGAGGATGGTTCCTTATT
GCAAAGGGCCAGCAACGTCGTCACTATCAGTCAGAGCAGCGGGAGCAGCA
TGATGGGAAGCACAGGTGTGGGCGAGGAGGAAGACGCTCCAGCTGTCTAC
GACAAACAGGGGGAGAAGACAGGCGAAAAGGAAGAGGGCCGGGAGGGGGG
AAACGAGAACGACACAGAAGCCACCACACTGGGTCGGCATTCGTCACATC
CCACCCACCTGCTCGACACGTCGTTCGACCGTTTCCTGGCAACGGCTTTT
CTGGCTCCCTTCCGCGCTTCCCACCCTCAGGCCTTGCTTGCCCTGTACAC
AGCCCTCGAATGCGAAGAACTCTTGCCTGCCGACCTATTGGCAGCAGGAG
CAGCAGCCGATGGCCCCAACAAGGGCCCGCTGGACGACATACTGCTGCTC
GAAGATCGAGACCAGACAGCCATTTCCAAGCGTCGCCCCGTTTTCCGTCG
GCTCCTCCATCGTGAAAACGCCGCAACCTCCGGCTTCATCTCCGCCTACG
CCACCCGCACCCAAGAACGTGCCGAGCGAAGCACCCGTCAATCTGCGGGA
GAATCTCAAGCACTCGAAAACGTTGTGGACCCCAACCGGAAACCCACCGG
CGGCGCTACTGGAACAGGAGCTAAACCACTACCCACCCAGCTTCCCATCC
CCCCCCTTTCGAGCAGTACGGTTCTGCAGCAGGCTCTCACAGACAGTCAA
CGGGCCCATCCCAGTCATTACATGACACGTATCAATAGCTTCCGGAAACC
CACAAACCTCTCTCGTCGTCCCTCCCTTCCTCTTGGCCAGCAGTACCACC
ACCACCACCAGCACCAGCACCGCCAAGAACAAGAACAAGAGCAGCAGCAA
ATGCATCCACAAACAGGGAATCAGCGTGCCACAGCCATGGCTTTGAAACA
AACGCGGTCCGCGGAACCTGAAGCAGCAACAACAAAAGGAGCAGCAAGAG
GGGTGCTTTCGTCCACCGCCACCACCTACCGTTCCTTCTCCTCCTCCTCT
TCTTCTTTCGCTTCCTCGTCTTCGACCTCCTCGTCGATCATTAAACGGGC
CCCCGTGGGTGGGTTAGAGAAAAAACGATGTCGACAAGGTCAGAATCATG
GCAATGGCAAGAGTGGAGAATGGAGGACGGACAAGAAGGAAAGCCTCGAT
GGAAGAGGGACAAAGAGAAGACAAGGAGGCGGAGGAAAAGGATATGTAGA
AGTGAGTGAAGGAGGCGGAAGACGAGAAAGCTCATCTGTAGTTCAGAAAT
TCACTCCCACGGTTTGTAGCGGACGCCCCAATTTTAGCAGCAGCAGCAGC
AGTGATAAGAACGACAGTACGAGCAGCAGGATGGGATCGGTAGATGCGAC
TATATTAGGAACTCCCCCGCCATCCTTGAGGAAGAAACGACCGGGAGGAG
GTGTAAGAGGAGACGGAAGGGGAGGAGGAGCTGTGGTTGCAGGAACACCA
GAGGCGGTGGGCAGAAATGTGCGGGCGAAGCGGACGACTGTTGCGGAGTC
GCCTCAAGGCTAGGGGGGGGGGAGAAGGAGGAGATGGAGGAGGAAGACGA
GGAGGAGAGAAGGAAGGGGGGGAAGGAGAACGACGAGGAGGACTATGGGG
AGGAGGAAGAAGAAGAAAGGGGATGGGGAAGAAAGGAGGAAGGGGAGGAG
GCCAGGTGCATGCCTACTGAAGCAGCGTTGGAGATGCAGATTCCACCTCA
GACAAGGAGTAGGATGTGATGCAATACGACCTCAGGGAAACATACAAGAG
GTGATGGCATATGACGATCAGAAGAGGTCAAAAGCATCAAAATGTCGACT
CCCGTATCCCGTAGTAATCTGGATGAAAAAGCAAATAAAAAAACCTTTAA
AAAGAAG
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protein sequence of NO09G01770.1

>NO09G01770.1-protein ID=NO09G01770.1-protein|Name=NO09G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=725bp
MASTATMSPDALCDTLRALTAQALQQGGHRLIDAITKDLRNMVGQFLQSQ
ESIPTPSMLHSSTSDEPLASATTLQKKHQFPQRALSKVLRRKLLVDVDTL
RAAYASSRGGMVGSSSGVPFSDPSTVLSARVPGLSSHTGLVRELQLQALL
HFSLGTMGLMHAKQDASSSSPLSCSSSTLSLSPSLLRRVHRFLADLQLRQ
TFSLGTGGTRELQRDEDGSLLQRASNVVTISQSSGSSMMGSTGVGEEEDA
PAVYDKQGEKTGEKEEGREGGNENDTEATTLGRHSSHPTHLLDTSFDRFL
ATAFLAPFRASHPQALLALYTALECEELLPADLLAAGAAADGPNKGPLDD
ILLLEDRDQTAISKRRPVFRRLLHRENAATSGFISAYATRTQERAERSTR
QSAGESQALENVVDPNRKPTGGATGTGAKPLPTQLPIPPLSSSTVLQQAL
TDSQRAHPSHYMTRINSFRKPTNLSRRPSLPLGQQYHHHHQHQHRQEQEQ
EQQQMHPQTGNQRATAMALKQTRSAEPEAATTKGAARGVLSSTATTYRSF
SSSSSSFASSSSTSSSIIKRAPVGGLEKKRCRQGQNHGNGKSGEWRTDKK
ESLDGRGTKRRQGGGGKGYVEVSEGGGRRESSSVVQKFTPTVCSGRPNFS
SSSSSDKNDSTSSRMGSVDATILGTPPPSLRKKRPGGGVRGDGRGGGAVV
AGTPEAVGRNVRAKRTTVAESPQG*
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mRNA from alignment at chr9:550002..552608+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01770.1 ID=NO09G01770.1|Name=NO09G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2607bp|location=Sequence derived from alignment at chr9:550002..552608+ (Nannochloropsis oceanica)
ACAGTTATCCTGGGCACGCACCCCGAAATCCCAGGGAAGTGGCGGTCCAT TCCACACCCGAGAGGACTCTTCGTTTCCTCCATCATTCATGGCGTCTACC GCGACCATGTCCCCCGACGCGCTTTGCGACACGCTCCGAGCGCTCACGGC GCAAGCACTGCAACAAGGAGGACACCGCCTTATTGATGCCATCACGAAGG ATCTCCGTAATATGGTTGGCCAGTTTCTTCAAAGCCAGGAGAGCATTCCC ACCCCAAGCATGCTGCATTCTTCGACATCTGACGAGCCTCTGGCTTCCGC CACCACTTTGCAGAAGAAGCATCAGTTCCCCCAGAGAGCCCTAAGCAAGG TACTCCGGCGCAAGTTGTTGGTAGACGTGGACACGCTGCGAGCAGCCTAC GCATCGAGTCGTGGAGGCATGGTCGGCAGTAGCAGTGGCGTCCCCTTCAG TGACCCCTCTACTGTGTTGAGCGCCCGTGTTCCAGGTCTCTCATCACATA CAGGATTGGTCCGGGAGCTGCAACTCCAGGCATTATTACATTTTTCGTTG GGAACGATGGGCCTGATGCACGCGAAGCAAGATGCTTCCTCCTCCTCGCC CTTGTCCTGTTCGTCTTCGACCCTCTCCCTCTCTCCCTCCTTGCTTAGAC GCGTGCATCGTTTTTTAGCCGACCTACAGCTTCGACAAACCTTCTCACTC GGTACTGGTGGTACCAGAGAATTACAGAGAGATGAGGATGGTTCCTTATT GCAAAGGGCCAGCAACGTCGTCACTATCAGTCAGAGCAGCGGGAGCAGCA TGATGGGAAGCACAGGTGTGGGCGAGGAGGAAGACGCTCCAGCTGTCTAC GACAAACAGGGGGAGAAGACAGGCGAAAAGGAAGAGGGCCGGGAGGGGGG AAACGAGAACGACACAGAAGCCACCACACTGGGTCGGCATTCGTCACATC CCACCCACCTGCTCGACACGTCGTTCGACCGTTTCCTGGCAACGGCTTTT CTGGCTCCCTTCCGCGCTTCCCACCCTCAGGCCTTGCTTGCCCTGTACAC AGCCCTCGAATGCGAAGAACTCTTGCCTGCCGACCTATTGGCAGCAGGAG CAGCAGCCGATGGCCCCAACAAGGGCCCGCTGGACGACATACTGCTGCTC GAAGATCGAGACCAGACAGCCATTTCCAAGCGTCGCCCCGTTTTCCGTCG GCTCCTCCATCGTGAAAACGCCGCAACCTCCGGCTTCATCTCCGCCTACG CCACCCGCACCCAAGAACGTGCCGAGCGAAGCACCCGTCAATCTGCGGGA GAATCTCAAGCACTCGAAAACGTTGTGGACCCCAACCGGAAACCCACCGG CGGCGCTACTGGAACAGGAGCTAAACCACTACCCACCCAGCTTCCCATCC CCCCCCTTTCGAGCAGTACGGTTCTGCAGCAGGCTCTCACAGACAGTCAA CGGGCCCATCCCAGTCATTACATGACACGTATCAATAGCTTCCGGAAACC CACAAACCTCTCTCGTCGTCCCTCCCTTCCTCTTGGCCAGCAGTACCACC ACCACCACCAGCACCAGCACCGCCAAGAACAAGAACAAGAGCAGCAGCAA ATGCATCCACAAACAGGGAATCAGCGTGCCACAGCCATGGCTTTGAAACA AACGCGGTCCGCGGAACCTGAAGCAGCAACAACAAAAGGAGCAGCAAGAG GGGTGCTTTCGTCCACCGCCACCACCTACCGTTCCTTCTCCTCCTCCTCT TCTTCTTTCGCTTCCTCGTCTTCGACCTCCTCGTCGATCATTAAACGGGC CCCCGTGGGTGGGTTAGAGAAAAAACGATGTCGACAAGGTCAGAATCATG GCAATGGCAAGAGTGGAGAATGGAGGACGGACAAGAAGGAAAGCCTCGAT GGAAGAGGGACAAAGAGAAGACAAGGAGGCGGAGGAAAAGGATATGTAGA AGTGAGTGAAGGAGGCGGAAGACGAGAAAGCTCATCTGTAGTTCAGAAAT TCACTCCCACGGTTTGTAGCGGACGCCCCAATTTTAGCAGCAGCAGCAGC AGTGATAAGAACGACAGTACGAGCAGCAGGATGGGATCGGTAGATGCGAC TATATTAGGAACTCCCCCGCCATCCTTGAGGAAGAAACGACCGGGAGGAG GTGTAAGAGGAGACGGAAGGGGAGGAGGAGCTGTGGTTGCAGGAACACCA GAGGCGGTGGGCAGAAATGTGCGGGCGAAGCGGACGACTGTTGCGGAGTC GCCTCAAGGCTAGGGGGGGGGGAGAAGGAGGAGATGGAGGAGGAAGACGA GGAGGAGAGAAGGAAGGGGGGGAAGGAGAACGACGAGGAGGACTATGGGG AGGAGGAAGAAGAAGAAAGGGGATGGGGAAGAAAGGAGGAAGGGGAGGAG GCCAGGTGCATGCCTACTGAAGCAGCGTTGGAGATGCAGATTCCACCTCA GACAAGGAGTAGGATGTGATGCAATACGACCTCAGGGAAACATACAAGAG GTGATGGCATATGACGATCAGAAGAGGTCAAAAGCATCAAAATGTCGACT CCCGTATCCCGTAGTAATCTGGATGAAAAAGCAAATAAAAAAACCTTTAA AAAGAAG
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Coding sequence (CDS) from alignment at chr9:550002..552608+

>NO09G01770.1 ID=NO09G01770.1|Name=NO09G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=2175bp|location=Sequence derived from alignment at chr9:550002..552608+ (Nannochloropsis oceanica)
ATGGCGTCTACCGCGACCATGTCCCCCGACGCGCTTTGCGACACGCTCCG
AGCGCTCACGGCGCAAGCACTGCAACAAGGAGGACACCGCCTTATTGATG
CCATCACGAAGGATCTCCGTAATATGGTTGGCCAGTTTCTTCAAAGCCAG
GAGAGCATTCCCACCCCAAGCATGCTGCATTCTTCGACATCTGACGAGCC
TCTGGCTTCCGCCACCACTTTGCAGAAGAAGCATCAGTTCCCCCAGAGAG
CCCTAAGCAAGGTACTCCGGCGCAAGTTGTTGGTAGACGTGGACACGCTG
CGAGCAGCCTACGCATCGAGTCGTGGAGGCATGGTCGGCAGTAGCAGTGG
CGTCCCCTTCAGTGACCCCTCTACTGTGTTGAGCGCCCGTGTTCCAGGTC
TCTCATCACATACAGGATTGGTCCGGGAGCTGCAACTCCAGGCATTATTA
CATTTTTCGTTGGGAACGATGGGCCTGATGCACGCGAAGCAAGATGCTTC
CTCCTCCTCGCCCTTGTCCTGTTCGTCTTCGACCCTCTCCCTCTCTCCCT
CCTTGCTTAGACGCGTGCATCGTTTTTTAGCCGACCTACAGCTTCGACAA
ACCTTCTCACTCGGTACTGGTGGTACCAGAGAATTACAGAGAGATGAGGA
TGGTTCCTTATTGCAAAGGGCCAGCAACGTCGTCACTATCAGTCAGAGCA
GCGGGAGCAGCATGATGGGAAGCACAGGTGTGGGCGAGGAGGAAGACGCT
CCAGCTGTCTACGACAAACAGGGGGAGAAGACAGGCGAAAAGGAAGAGGG
CCGGGAGGGGGGAAACGAGAACGACACAGAAGCCACCACACTGGGTCGGC
ATTCGTCACATCCCACCCACCTGCTCGACACGTCGTTCGACCGTTTCCTG
GCAACGGCTTTTCTGGCTCCCTTCCGCGCTTCCCACCCTCAGGCCTTGCT
TGCCCTGTACACAGCCCTCGAATGCGAAGAACTCTTGCCTGCCGACCTAT
TGGCAGCAGGAGCAGCAGCCGATGGCCCCAACAAGGGCCCGCTGGACGAC
ATACTGCTGCTCGAAGATCGAGACCAGACAGCCATTTCCAAGCGTCGCCC
CGTTTTCCGTCGGCTCCTCCATCGTGAAAACGCCGCAACCTCCGGCTTCA
TCTCCGCCTACGCCACCCGCACCCAAGAACGTGCCGAGCGAAGCACCCGT
CAATCTGCGGGAGAATCTCAAGCACTCGAAAACGTTGTGGACCCCAACCG
GAAACCCACCGGCGGCGCTACTGGAACAGGAGCTAAACCACTACCCACCC
AGCTTCCCATCCCCCCCCTTTCGAGCAGTACGGTTCTGCAGCAGGCTCTC
ACAGACAGTCAACGGGCCCATCCCAGTCATTACATGACACGTATCAATAG
CTTCCGGAAACCCACAAACCTCTCTCGTCGTCCCTCCCTTCCTCTTGGCC
AGCAGTACCACCACCACCACCAGCACCAGCACCGCCAAGAACAAGAACAA
GAGCAGCAGCAAATGCATCCACAAACAGGGAATCAGCGTGCCACAGCCAT
GGCTTTGAAACAAACGCGGTCCGCGGAACCTGAAGCAGCAACAACAAAAG
GAGCAGCAAGAGGGGTGCTTTCGTCCACCGCCACCACCTACCGTTCCTTC
TCCTCCTCCTCTTCTTCTTTCGCTTCCTCGTCTTCGACCTCCTCGTCGAT
CATTAAACGGGCCCCCGTGGGTGGGTTAGAGAAAAAACGATGTCGACAAG
GTCAGAATCATGGCAATGGCAAGAGTGGAGAATGGAGGACGGACAAGAAG
GAAAGCCTCGATGGAAGAGGGACAAAGAGAAGACAAGGAGGCGGAGGAAA
AGGATATGTAGAAGTGAGTGAAGGAGGCGGAAGACGAGAAAGCTCATCTG
TAGTTCAGAAATTCACTCCCACGGTTTGTAGCGGACGCCCCAATTTTAGC
AGCAGCAGCAGCAGTGATAAGAACGACAGTACGAGCAGCAGGATGGGATC
GGTAGATGCGACTATATTAGGAACTCCCCCGCCATCCTTGAGGAAGAAAC
GACCGGGAGGAGGTGTAAGAGGAGACGGAAGGGGAGGAGGAGCTGTGGTT
GCAGGAACACCAGAGGCGGTGGGCAGAAATGTGCGGGCGAAGCGGACGAC
TGTTGCGGAGTCGCCTCAAGGCTAG
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Synonyms
Publications