NO09G01760.2, NO09G01760.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01760.2
Unique NameNO09G01760.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2148
Alignment locationchr9:547253..549720 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:547253..549720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01760.2 vs.
Match: EWM27615.1 (dna repair protein rad51 [Nannochloropsis gaditana])

HSP 1 Score: 568.9 bits (1465), Expect = 9.100e-159
Identity = 284/297 (95.62%), Postives = 295/297 (99.33%), Query Frame = 0 
Query:    1 MEAGYCTVEAVTHATIRKLTDIKGISDQKALKIKEVAYKLVPMGFLTAAQQLETRKDLIQLSTGSKDLDALLGGGIETGSLTEIFGEFRTGKTQLCHTLCVTSQLPLDQGGGEGKAMYIDTEGTFRPQRLVAIAERFGLDVETVLDNVAFARAHNSEQQMDLLKMASAMMSEDRYALVVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMSEEFGVAVVLTNQVVANPDGMSFAKDATKPIGGNIIAHASHTRLRLRKGRGENRICQIYDSPTLPEAETQFSIGATGIDNAKE 298
            MEAGYCTVE++THAT+RKLTDIKGISDQKA KIKE+AYKLVPMGFLTAAQQLETRKDLIQLSTGSKDLDALLGGG+ETGSLTEIFGEFRTGKTQLCHTLCVTSQLP+DQGGGEGKAMYIDTEGTFRPQRLVAIAERFGLDV+TVLDNVAFARAHNSEQQMDLLKMASAMMSEDRYALVVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMSEEFGVAVVLTNQVVANPDGMSFAKD TKPIGGNIIAHASHTRLRLRKGRGENRICQIYDSPTLPEAETQFSIGA+GI++AK+
Sbjct:   79 MEAGYCTVESITHATLRKLTDIKGISDQKAQKIKEIAYKLVPMGFLTAAQQLETRKDLIQLSTGSKDLDALLGGGVETGSLTEIFGEFRTGKTQLCHTLCVTSQLPMDQGGGEGKAMYIDTEGTFRPQRLVAIAERFGLDVDTVLDNVAFARAHNSEQQMDLLKMASAMMSEDRYALVVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMSEEFGVAVVLTNQVVANPDGMSFAKDQTKPIGGNIIAHASHTRLRLRKGRGENRICQIYDSPTLPEAETQFSIGASGIEDAKD 375
The following BLAST results are available for this feature:
BLAST of NO09G01760.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27615.19.100e-15995.62dna repair protein rad51 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01760NO09G01760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01760.2NO09G01760.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01760.2.cds1NO09G01760.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01760.2.cds2NO09G01760.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01760.2.cds3NO09G01760.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01760.2 ID=NO09G01760.2|Name=NO09G01760.2|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp
AAGTTATGAAAATGAATGAATCCAATCGCCAAGACCATCCCCTGCAACGA
CCATCGACGCAATCATAAGCACCTGCAAAGGGACTCCTGGGATAACATGA
GTGAAACGGCACGAGGCGTTGTTTAGGTTTGGATGCCTTGTGAGGCGCAA
TTGACGGAGACTCGCTTCTCGTCAGCCATACCCAGCATCACATTCGCTCC
CGCTATCATTCCCTTTCCCAGCATCACAAGCCGCAAGTCCACTCCCTCCT
CCTCATTGCGACCAGAAAGTTCCTGGTCCCTGGATCATCCATGCAGAGGG
AGTGGCAGCCTTTTGCCGGTACATACTTTTCAGCCCTCTTCAGTGACGTC
ATTTTAAGGCACATCGACATCCCTGCTCCCCGCTCCCTCACACGCACCCC
ACAGACACCCACACGCCCATAACTAGCATCAGCAACAGCACCAGCCCAGC
AACATTGATATACCATGGCGGCAGCAGCAGCAGAGATGCAGCACGTGGGG
CTAGAGCAGCAGCAGGTGGGCGAGCACGAGGTACGTGTGGTAATAAAGGT
GAAGCGAGGGTGAGAGGGGAAGAGGATCAATGGGCAGACGCCGCCGGCAG
TGAGAGTTGGTATTTCCCTCGTCCTCCCCCTTTTCTTCTCAATTTATGCT
TACTGGTTGAATCGTGCCTTAGTAGAGATGTCGCCGCCGCATCCCCCACC
TCACCCATCCCTCCCTCTCCTTCCCCTTGCCACCAGGTTATTGTCAACTT
CCGGCATATCTCCGAACTTGAGCACCATGGCATCAATCGTACCGACCTGA
ACAAGCTCATGGAGGCCGGATATTGCACCGTCGAGGCTGTCACACACGCC
ACCATCCGCAAACTAACTGACATCAAGGGCATCTCCGACCAGAAGGCCCT
CAAAATCAAAGAAGTCGCCTACAAACTCGTTCCCATGGGATTCCTCACCG
CTGCCCAACAGCTCGAAACCCGCAAGGACCTGATTCAGCTCTCGACGGGG
TCCAAAGATTTGGATGCTTTGCTGGGCGGAGGGATAGAAACAGGCAGCCT
CACGGAGATTTTCGGGGAATTCCGTACGGGCAAGACCCAACTCTGTCACA
CCCTCTGTGTGACGAGCCAGTTGCCGCTGGACCAGGGAGGAGGAGAAGGG
AAGGCCATGTATATTGACACGGAGGGGACCTTCCGTCCCCAGCGGTTGGT
GGCCATTGCCGAGCGTTTCGGCCTGGACGTGGAAACCGTGTTGGACAATG
TAGCTTTTGCGCGGGCCCATAATTCGGAGCAGCAAATGGATTTATTGAAG
ATGGCGTCGGCCATGATGAGTGAAGACCGGTACGCCCTCGTGGTGGTCGA
CAGTGCCACTGCCCTATTCCGTACTGACTACTGCGGCCGCGGGGAGCTGA
GCGAGCGCCAGATGCAGCTAGCTCAATTTCTCCGTCAACTGACCCGGATG
TCAGAGGAGTTCGGCGTGGCCGTCGTGCTGACCAACCAAGTGGTGGCGAA
CCCGGACGGGATGAGTTTTGCCAAGGATGCGACCAAGCCGATTGGGGGCA
ATATCATCGCACACGCCAGCCACACGCGGCTGCGGTTGAGGAAGGGGAGG
GGGGAGAATCGCATATGCCAGATATATGATTCGCCGACCTTGCCGGAGGC
GGAGACGCAGTTTTCGATTGGCGCCACGGGGATTGATAATGCCAAGGAGT
AAGAGAGGGAGAGAGAGAGGGTAGGATCGGAAGAAACGGTGTATGCGGGG
GGGGGATGAGGAGAGAAGTGAAGAATGAAGGGAAGGTAGGAGAATGGAAA
GGAGGTGGAGAAAAGAGGGGAAAGAAACCACAGAAATGCAGAAAGGCAAC
CGGCGTGAGAGAAAGCTAGCTAGTGACAGTAAGTGTACAGTAGATAAGGA
TGTCAATGCTTGAGGGGGAGGGGGGCAAAGCATGCACCAGGGACTCCGGT
AGGGTGTGGAGTGTCACGCTGAGGAGCAGAATGGAACAGTAAGAGGAGGA
GGCGGGAGGGAGGGATGGAGGGGTGAGGAAGAATGAGGAGTGTGTGTGTT
TGGGAGAGGGCGAGATAAAGTAAGATGCCTAGAGAAAAGAATAAGGAACG
ATGTATGTCGGTTCGTTGGGTAGGGGATTGGTTGCGTTGGGGGATGCG
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protein sequence of NO09G01760.2

>NO09G01760.2-protein ID=NO09G01760.2-protein|Name=NO09G01760.2|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MEAGYCTVEAVTHATIRKLTDIKGISDQKALKIKEVAYKLVPMGFLTAAQ
QLETRKDLIQLSTGSKDLDALLGGGIETGSLTEIFGEFRTGKTQLCHTLC
VTSQLPLDQGGGEGKAMYIDTEGTFRPQRLVAIAERFGLDVETVLDNVAF
ARAHNSEQQMDLLKMASAMMSEDRYALVVVDSATALFRTDYCGRGELSER
QMQLAQFLRQLTRMSEEFGVAVVLTNQVVANPDGMSFAKDATKPIGGNII
AHASHTRLRLRKGRGENRICQIYDSPTLPEAETQFSIGATGIDNAKE*
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mRNA from alignment at chr9:547253..549720+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01760.2 ID=NO09G01760.2|Name=NO09G01760.2|organism=Nannochloropsis oceanica|type=mRNA|length=2468bp|location=Sequence derived from alignment at chr9:547253..549720+ (Nannochloropsis oceanica)
AAGTTATGAAAATGAATGAATCCAATCGCCAAGACCATCCCCTGCAACGA
CCATCGACGCAATCATAAGCACCTGCAAAGGGACTCCTGGGATAACATGA
GTGAAACGGCACGAGGCGTTGTTTAGGTTTGGATGCCTTGTGAGGCGCAA
TTGACGGAGACTCGCTTCTCGTCAGCCATACCCAGCATCACATTCGCTCC
CGCTATCATTCCCTTTCCCAGCATCACAAGCCGCAAGTCCACTCCCTCCT
CCTCATTGCGACCAGAAAGTTCCTGGTCCCTGGATCATCCATGCAGAGGG
AGTGGCAGCCTTTTGCCGGTACATACTTTTCAGCCCTCTTCAGTGACGTC
ATTTTAAGGCACATCGACATCCCTGCTCCCCGCTCCCTCACACGCACCCC
ACAGACACCCACACGCCCATAACTAGCATCAGCAACAGCACCAGCCCAGC
AACATTGATATACCATGGCGGCAGCAGCAGCAGAGATGCAGCACGTGGGG
CTAGAGCAGCAGCAGGTGGGCGAGCACGAGGTACGTGTGGTAATAAAGGT
GAAGCGAGGGTGAGAGGGGAAGAGGATCAATGGGCAGACGCCGCCGGCAG
TGAGAGTTGGTATTTCCCTCGTCCTCCCCCTTTTCTTCTCAATTTATGCT
TACTGGTTGAATCGTGCCTTAGTAGAGATGTCGCCGCCGCATCCCCCACC
TCACCCATCCCTCCCTCTCCTTCCCCTTGCCACCAGGTTATTGTCAACTT
CCGGCATATCTCCGAACTTGAGCACCATGGCATCAATCGTACCGACCTGA
ACAAGCTCATGGAGGCCGGATATTGCACCGTCGAGGCTGTCACACACGCC
ACCATCCGCAAACTAACTGACATCAAGGTAAGGTAGTAGAGTAGGGGAAG
AGAAGGGGGAGTCAGTCCTCTTCACGCTCATTCGTCCGTGCTTCTTCTGC
TACTCATGTCAGGCTAACTTTTTTTCCACACTGTCCTCCTCCTTCCCATT
TCTTTTTCTCTCTTTCTCACCCTACTTCTCCTTTTCCCCAGGGCATCTCC
GACCAGAAGGCCCTCAAAATCAAAGAAGTCGCCTACAAACTCGTTCCCAT
GGGATTCCTCACCGCTGCCCAACAGCTCGAAACCCGCAAGGACCTGATTC
AGCTCTCGACGGGGTCCAAAGATTTGGATGCTTTGCTGGGCGGAGGGATA
GAAACAGGCAGCCTCACGGAGATTTTCGGGGAATTCCGTACGGGCAAGAC
CCAACTCTGTCACACCCTCTGTGTGACGAGCCAGTTGCCGCTGGACCAGG
GAGGAGGAGAAGGGAAGGCCATGTATATTGACACGGAGGGGACCTTCCGT
CCCCAGCGGTTGGTGGCCATTGCCGAGCGTTTCGGCCTGGACGTGGAAAC
CGTGTTGGACAATGTAGCTTTTGCGCGGGCCCATAATTCGGAGCAGCAAA
TGGATTTATTGAAGATGGCGTCGGCCATGATGAGGTACGTCCGATGCCCT
CCTCTCTTCCTTCCTCCCTCCTTTGTCCCCCTTCCTCCGCTTCTGCGCTT
TCTGTCGGGGAGCCAACAAAAGGCAGGTGCAGTTCGCTCACTCCCTCTCT
CCCTCCTTTCCTCCCTCCCTCCTTCCTTCATTCCCCACAGTGAAGACCGG
TACGCCCTCGTGGTGGTCGACAGTGCCACTGCCCTATTCCGTACTGACTA
CTGCGGCCGCGGGGAGCTGAGCGAGCGCCAGATGCAGCTAGCTCAATTTC
TCCGTCAACTGACCCGGATGTCAGAGGAGTTCGGCGTGGCCGTCGTGCTG
ACCAACCAAGTGGTGGCGAACCCGGACGGGATGAGTTTTGCCAAGGATGC
GACCAAGCCGATTGGGGGCAATATCATCGCACACGCCAGCCACACGCGGC
TGCGGTTGAGGAAGGGGAGGGGGGAGAATCGCATATGCCAGATATATGAT
TCGCCGACCTTGCCGGAGGCGGAGACGCAGTTTTCGATTGGCGCCACGGG
GATTGATAATGCCAAGGAGTAAGAGAGGGAGAGAGAGAGGGTAGGATCGG
AAGAAACGGTGTATGCGGGGGGGGGATGAGGAGAGAAGTGAAGAATGAAG
GGAAGGTAGGAGAATGGAAAGGAGGTGGAGAAAAGAGGGGAAAGAAACCA
CAGAAATGCAGAAAGGCAACCGGCGTGAGAGAAAGCTAGCTAGTGACAGT
AAGTGTACAGTAGATAAGGATGTCAATGCTTGAGGGGGAGGGGGGCAAAG
CATGCACCAGGGACTCCGGTAGGGTGTGGAGTGTCACGCTGAGGAGCAGA
ATGGAACAGTAAGAGGAGGAGGCGGGAGGGAGGGATGGAGGGGTGAGGAA
GAATGAGGAGTGTGTGTGTTTGGGAGAGGGCGAGATAAAGTAAGATGCCT
AGAGAAAAGAATAAGGAACGATGTATGTCGGTTCGTTGGGTAGGGGATTG
GTTGCGTTGGGGGATGCG
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Coding sequence (CDS) from alignment at chr9:547253..549720+

>NO09G01760.2 ID=NO09G01760.2|Name=NO09G01760.2|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at chr9:547253..549720+ (Nannochloropsis oceanica)
ATGGAGGCCGGATATTGCACCGTCGAGGCTGTCACACACGCCACCATCCG
CAAACTAACTGACATCAAGGGCATCTCCGACCAGAAGGCCCTCAAAATCA
AAGAAGTCGCCTACAAACTCGTTCCCATGGGATTCCTCACCGCTGCCCAA
CAGCTCGAAACCCGCAAGGACCTGATTCAGCTCTCGACGGGGTCCAAAGA
TTTGGATGCTTTGCTGGGCGGAGGGATAGAAACAGGCAGCCTCACGGAGA
TTTTCGGGGAATTCCGTACGGGCAAGACCCAACTCTGTCACACCCTCTGT
GTGACGAGCCAGTTGCCGCTGGACCAGGGAGGAGGAGAAGGGAAGGCCAT
GTATATTGACACGGAGGGGACCTTCCGTCCCCAGCGGTTGGTGGCCATTG
CCGAGCGTTTCGGCCTGGACGTGGAAACCGTGTTGGACAATGTAGCTTTT
GCGCGGGCCCATAATTCGGAGCAGCAAATGGATTTATTGAAGATGGCGTC
GGCCATGATGAGTGAAGACCGGTACGCCCTCGTGGTGGTCGACAGTGCCA
CTGCCCTATTCCGTACTGACTACTGCGGCCGCGGGGAGCTGAGCGAGCGC
CAGATGCAGCTAGCTCAATTTCTCCGTCAACTGACCCGGATGTCAGAGGA
GTTCGGCGTGGCCGTCGTGCTGACCAACCAAGTGGTGGCGAACCCGGACG
GGATGAGTTTTGCCAAGGATGCGACCAAGCCGATTGGGGGCAATATCATC
GCACACGCCAGCCACACGCGGCTGCGGTTGAGGAAGGGGAGGGGGGAGAA
TCGCATATGCCAGATATATGATTCGCCGACCTTGCCGGAGGCGGAGACGC
AGTTTTCGATTGGCGCCACGGGGATTGATAATGCCAAGGAGTAA
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Synonyms
Publications