NO09G01740.1, NO09G01740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01740.1
Unique NameNO09G01740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2180
Alignment locationchr9:542382..544561 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:542382..544561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01740.1 vs.
Match: EWM27614.1 (hypothetical protein Naga_100069g19 [Nannochloropsis gaditana])

HSP 1 Score: 482.3 bits (1240), Expect = 1.900e-132
Identity = 281/456 (61.62%), Postives = 341/456 (74.78%), Query Frame = 0 
Query:   34 LSLLSLVTFIRLDPALAFYLPTPFSSVVCSSQSHYPIITGKIIKPPSRK---YFTPPKQQEAETPTKEQQQSFQSSSSSNPLALP---SSQYNELMEALSDDEKYNILLQSRAATLVQALGNKGKGPAGAAMTMPQTFQPIYKLIEEMTEKNVRISPKSFAALVDAASLSRDLSVIQECMLLARRNGASRVFARGVGTLSPPPPLCASTVAGGGAAASEIDALPPVPHDERTSELGAGVAALTVLGGALMVEALGPLVHVDTWPATVVLVGAAVAAGLDLTQRQGEEVKLVLAGLSRMFMRDPEREARVQAATFLSAYLLGLPCFCFSPNVLEAVKMTTDVQEFAEMLSSPVGMNRVLVYMLAPVVVEEANHLQLIASDPRQARALVQVC--RERRRGREGGWEGEADEKEEERLLRWAYEEARRLVGMNSGLLEKLRQRMESGGATVGDCVALLE 482
            L++L     I   P +AFYLP P    + +S +H P  +   ++P +RK   +FTPP+QQEAE     + Q      +S PLALP   SSQY+ELM+ LSDDEKYNILLQSRA++LVQ LG KG+G  G + +  + F P+YKL+EEMT+K++RI+ KSFAAL+DAASLSRDL+VIQEC+LLARRNG SR FAR VGTL+PPPPL          AAS+   L PVP D RTSEL AGVAALTV+GGAL VEA+GPL+H DT  A+VVL GAAV    DLTQR+G+E+ L LAG++R+F+RDPER+A VQAATFLSAYLLGLPCFCFSPNV+EAV+MT  V  FAE LSS  G+NR+LVY+LAPV VEEAN+ QL+ASD RQARAL+QV   R   RG+EG        +EEE LL WAYEEA+RL+  +S LLE+L+QRMESGGATVGDCVALLE
Sbjct:   72 LAVLGFFGIIGRPPVVAFYLPVP----IPASPAHRPA-SFLPLRPSARKISRHFTPPRQQEAEI----EMQKKPLRPTSLPLALPGPSSSQYDELMDNLSDDEKYNILLQSRASSLVQLLGKKGRGMGGNSRSTSEAFTPLYKLVEEMTDKDMRITLKSFAALIDAASLSRDLNVIQECLLLARRNGVSRAFARSVGTLNPPPPL---------RAASDRYDLSPVPSDARTSELAAGVAALTVVGGALSVEAVGPLLHADTTAASVVLGGAAVMGVWDLTQRKGQELTLALAGINRLFLRDPERDAHVQAATFLSAYLLGLPCFCFSPNVMEAVRMTAQVPAFAETLSSTAGLNRLLVYLLAPVAVEEANYAQLMASDARQARALLQVFMGRGEARGQEG--------REEEVLLPWAYEEAKRLLRSHSALLERLKQRMESGGATVGDCVALLE 501
The following BLAST results are available for this feature:
BLAST of NO09G01740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27614.11.900e-13261.62hypothetical protein Naga_100069g19 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01740NO09G01740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01740.1NO09G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01740.1.cds1NO09G01740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01740.1 ID=NO09G01740.1|Name=NO09G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2180bp
CCTATGGCACGAGGTTTGCTCTGGTTGGGAGAATGGGCCGTGGTACCACC
AGCAGTCTCGGTCCGAAGAGAGGGAGACTTGCTTCCCCTCTGGAGGCCGT
GTTCTCACGTGCCTGGTTTGCCCCTCCACAATCTTACCACCGCGTTATGG
ACTACTACCGACTGTGATTTTTCCCTCGGTTCCAGCCATCCCCCCTACCC
AGGACCTGGGCTCTTGCTGCAATTTGGCACGGTTGCTTGCCCTCCAATCC
ACTCTGCTTCAAGCCTCAACGCCTGCAACCCTCCTTTATAGTATGTCTCC
TCCACAATGCACAAGCGCGCCACCACACCCGGCAGCACGGCCAACACGAC
GACGACCAAGACGATCCCAACCACCACGGCCCTGTCCGCTCCTTTCCTTG
CTAAGTCTAGTCACCTTCATTCGACTAGATCCAGCCCTCGCATTCTACCT
CCCAACACCCTTCTCCTCCGTCGTCTGCTCATCCCAATCCCACTACCCCA
TTATCACCGGCAAAATAATAAAGCCGCCATCTCGAAAGTACTTCACACCT
CCCAAGCAGCAAGAAGCCGAAACCCCTACGAAGGAGCAACAACAATCCTT
CCAATCCTCCTCTTCCTCTAACCCCTTGGCGTTACCCTCCTCCCAGTACA
ACGAGCTCATGGAGGCCTTGTCCGACGACGAAAAATACAACATATTGCTA
CAAAGCCGCGCTGCTACCCTCGTTCAAGCACTGGGAAACAAGGGGAAGGG
CCCGGCAGGTGCCGCCATGACCATGCCTCAGACTTTCCAACCCATCTATA
AGCTAATCGAGGAAATGACCGAGAAAAACGTGCGTATAAGCCCTAAAAGC
TTTGCTGCTCTCGTGGATGCCGCCTCACTTTCACGGGACTTGAGCGTGAT
TCAGGAATGCATGTTGCTTGCGCGTCGAAATGGAGCCTCACGGGTGTTTG
CGCGTGGGGTAGGTACCTTGTCCCCGCCCCCTCCTCTTTGTGCAAGTACT
GTAGCAGGAGGAGGAGCAGCAGCATCCGAAATCGATGCGCTACCACCCGT
CCCACACGACGAGCGGACAAGCGAGCTGGGGGCAGGAGTAGCGGCATTGA
CGGTGTTGGGAGGTGCTTTAATGGTGGAGGCGCTGGGTCCTTTGGTGCAT
GTAGACACCTGGCCGGCTACTGTGGTGCTGGTCGGAGCAGCAGTAGCAGC
AGGACTGGACTTAACGCAACGACAGGGGGAGGAGGTGAAGTTGGTGCTGG
CAGGATTGAGCAGGATGTTCATGAGGGATCCGGAGAGGGAGGCGAGGGTG
CAAGCGGCGACGTTTCTGAGTGCGTATTTGTTGGGGTTACCCTGCTTTTG
CTTCTCTCCAAATGTGTTGGAGGCGGTGAAGATGACGACGGACGTTCAGG
AGTTTGCGGAAATGTTGTCTTCTCCGGTGGGAATGAATCGGGTGCTGGTG
TATATGTTGGCGCCTGTGGTGGTGGAGGAGGCGAATCACCTGCAACTGAT
CGCTTCGGATCCGCGGCAGGCCCGGGCATTGGTGCAGGTGTGTCGAGAAA
GGAGGAGAGGGAGGGAGGGTGGGTGGGAGGGAGAAGCCGATGAGAAGGAG
GAGGAGAGATTATTGAGATGGGCGTATGAGGAGGCCAGGAGGTTGGTGGG
GATGAATAGTGGATTGTTAGAGAAGCTGAGGCAACGGATGGAGAGTGGGG
GTGCCACCGTAGGGGACTGTGTAGCCTTGTTGGAGTCAGGGGGGGGAGGA
GGAGGGGGAGGAGGAGGGAGGAGGAGTGACTAGGTTGTGTGGATTGGAGG
GACGGAAGGGTGGAGAAGGTAGAGTGGCGGGAGGGGGGCAGTGGGAGGAG
AGAGCGATGAAAGTAGGAGGGAAAAAGAAGGCGGCTTTGGAGAAAAGAGA
CGACAGAAGACAAGACAATAACACATGTGTACAAAGGGGTAGGCACGCGG
TGTTTCACCGATGCTCGGCTAAGTAATAAGCGAAAGCATCATCAAAGACA
AGTCATACAACAAGGAGATCGAAACCGGCCATGAAGCAGTTCGCCTACAT
GCTCATCGCAAGGGACAACAGCTCTTAATCTTGACCTGTGAAAAATGGCT
CCGAGTTTGTTTCCCAATTCCACACAGAGATTGTGGGGCGACCAACGCAG
TCGTCCTTGTGCTTCTCTCGCTTCCTTTTA
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protein sequence of NO09G01740.1

>NO09G01740.1-protein ID=NO09G01740.1-protein|Name=NO09G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=497bp
MSPPQCTSAPPHPAARPTRRRPRRSQPPRPCPLLSLLSLVTFIRLDPALA
FYLPTPFSSVVCSSQSHYPIITGKIIKPPSRKYFTPPKQQEAETPTKEQQ
QSFQSSSSSNPLALPSSQYNELMEALSDDEKYNILLQSRAATLVQALGNK
GKGPAGAAMTMPQTFQPIYKLIEEMTEKNVRISPKSFAALVDAASLSRDL
SVIQECMLLARRNGASRVFARGVGTLSPPPPLCASTVAGGGAAASEIDAL
PPVPHDERTSELGAGVAALTVLGGALMVEALGPLVHVDTWPATVVLVGAA
VAAGLDLTQRQGEEVKLVLAGLSRMFMRDPEREARVQAATFLSAYLLGLP
CFCFSPNVLEAVKMTTDVQEFAEMLSSPVGMNRVLVYMLAPVVVEEANHL
QLIASDPRQARALVQVCRERRRGREGGWEGEADEKEEERLLRWAYEEARR
LVGMNSGLLEKLRQRMESGGATVGDCVALLESGGGGGGGGGGRRSD*
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mRNA from alignment at chr9:542382..544561+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01740.1 ID=NO09G01740.1|Name=NO09G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2180bp|location=Sequence derived from alignment at chr9:542382..544561+ (Nannochloropsis oceanica)
CCTATGGCACGAGGTTTGCTCTGGTTGGGAGAATGGGCCGTGGTACCACC
AGCAGTCTCGGTCCGAAGAGAGGGAGACTTGCTTCCCCTCTGGAGGCCGT
GTTCTCACGTGCCTGGTTTGCCCCTCCACAATCTTACCACCGCGTTATGG
ACTACTACCGACTGTGATTTTTCCCTCGGTTCCAGCCATCCCCCCTACCC
AGGACCTGGGCTCTTGCTGCAATTTGGCACGGTTGCTTGCCCTCCAATCC
ACTCTGCTTCAAGCCTCAACGCCTGCAACCCTCCTTTATAGTATGTCTCC
TCCACAATGCACAAGCGCGCCACCACACCCGGCAGCACGGCCAACACGAC
GACGACCAAGACGATCCCAACCACCACGGCCCTGTCCGCTCCTTTCCTTG
CTAAGTCTAGTCACCTTCATTCGACTAGATCCAGCCCTCGCATTCTACCT
CCCAACACCCTTCTCCTCCGTCGTCTGCTCATCCCAATCCCACTACCCCA
TTATCACCGGCAAAATAATAAAGCCGCCATCTCGAAAGTACTTCACACCT
CCCAAGCAGCAAGAAGCCGAAACCCCTACGAAGGAGCAACAACAATCCTT
CCAATCCTCCTCTTCCTCTAACCCCTTGGCGTTACCCTCCTCCCAGTACA
ACGAGCTCATGGAGGCCTTGTCCGACGACGAAAAATACAACATATTGCTA
CAAAGCCGCGCTGCTACCCTCGTTCAAGCACTGGGAAACAAGGGGAAGGG
CCCGGCAGGTGCCGCCATGACCATGCCTCAGACTTTCCAACCCATCTATA
AGCTAATCGAGGAAATGACCGAGAAAAACGTGCGTATAAGCCCTAAAAGC
TTTGCTGCTCTCGTGGATGCCGCCTCACTTTCACGGGACTTGAGCGTGAT
TCAGGAATGCATGTTGCTTGCGCGTCGAAATGGAGCCTCACGGGTGTTTG
CGCGTGGGGTAGGTACCTTGTCCCCGCCCCCTCCTCTTTGTGCAAGTACT
GTAGCAGGAGGAGGAGCAGCAGCATCCGAAATCGATGCGCTACCACCCGT
CCCACACGACGAGCGGACAAGCGAGCTGGGGGCAGGAGTAGCGGCATTGA
CGGTGTTGGGAGGTGCTTTAATGGTGGAGGCGCTGGGTCCTTTGGTGCAT
GTAGACACCTGGCCGGCTACTGTGGTGCTGGTCGGAGCAGCAGTAGCAGC
AGGACTGGACTTAACGCAACGACAGGGGGAGGAGGTGAAGTTGGTGCTGG
CAGGATTGAGCAGGATGTTCATGAGGGATCCGGAGAGGGAGGCGAGGGTG
CAAGCGGCGACGTTTCTGAGTGCGTATTTGTTGGGGTTACCCTGCTTTTG
CTTCTCTCCAAATGTGTTGGAGGCGGTGAAGATGACGACGGACGTTCAGG
AGTTTGCGGAAATGTTGTCTTCTCCGGTGGGAATGAATCGGGTGCTGGTG
TATATGTTGGCGCCTGTGGTGGTGGAGGAGGCGAATCACCTGCAACTGAT
CGCTTCGGATCCGCGGCAGGCCCGGGCATTGGTGCAGGTGTGTCGAGAAA
GGAGGAGAGGGAGGGAGGGTGGGTGGGAGGGAGAAGCCGATGAGAAGGAG
GAGGAGAGATTATTGAGATGGGCGTATGAGGAGGCCAGGAGGTTGGTGGG
GATGAATAGTGGATTGTTAGAGAAGCTGAGGCAACGGATGGAGAGTGGGG
GTGCCACCGTAGGGGACTGTGTAGCCTTGTTGGAGTCAGGGGGGGGAGGA
GGAGGGGGAGGAGGAGGGAGGAGGAGTGACTAGGTTGTGTGGATTGGAGG
GACGGAAGGGTGGAGAAGGTAGAGTGGCGGGAGGGGGGCAGTGGGAGGAG
AGAGCGATGAAAGTAGGAGGGAAAAAGAAGGCGGCTTTGGAGAAAAGAGA
CGACAGAAGACAAGACAATAACACATGTGTACAAAGGGGTAGGCACGCGG
TGTTTCACCGATGCTCGGCTAAGTAATAAGCGAAAGCATCATCAAAGACA
AGTCATACAACAAGGAGATCGAAACCGGCCATGAAGCAGTTCGCCTACAT
GCTCATCGCAAGGGACAACAGCTCTTAATCTTGACCTGTGAAAAATGGCT
CCGAGTTTGTTTCCCAATTCCACACAGAGATTGTGGGGCGACCAACGCAG
TCGTCCTTGTGCTTCTCTCGCTTCCTTTTA
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Coding sequence (CDS) from alignment at chr9:542382..544561+

>NO09G01740.1 ID=NO09G01740.1|Name=NO09G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=1491bp|location=Sequence derived from alignment at chr9:542382..544561+ (Nannochloropsis oceanica)
ATGTCTCCTCCACAATGCACAAGCGCGCCACCACACCCGGCAGCACGGCC
AACACGACGACGACCAAGACGATCCCAACCACCACGGCCCTGTCCGCTCC
TTTCCTTGCTAAGTCTAGTCACCTTCATTCGACTAGATCCAGCCCTCGCA
TTCTACCTCCCAACACCCTTCTCCTCCGTCGTCTGCTCATCCCAATCCCA
CTACCCCATTATCACCGGCAAAATAATAAAGCCGCCATCTCGAAAGTACT
TCACACCTCCCAAGCAGCAAGAAGCCGAAACCCCTACGAAGGAGCAACAA
CAATCCTTCCAATCCTCCTCTTCCTCTAACCCCTTGGCGTTACCCTCCTC
CCAGTACAACGAGCTCATGGAGGCCTTGTCCGACGACGAAAAATACAACA
TATTGCTACAAAGCCGCGCTGCTACCCTCGTTCAAGCACTGGGAAACAAG
GGGAAGGGCCCGGCAGGTGCCGCCATGACCATGCCTCAGACTTTCCAACC
CATCTATAAGCTAATCGAGGAAATGACCGAGAAAAACGTGCGTATAAGCC
CTAAAAGCTTTGCTGCTCTCGTGGATGCCGCCTCACTTTCACGGGACTTG
AGCGTGATTCAGGAATGCATGTTGCTTGCGCGTCGAAATGGAGCCTCACG
GGTGTTTGCGCGTGGGGTAGGTACCTTGTCCCCGCCCCCTCCTCTTTGTG
CAAGTACTGTAGCAGGAGGAGGAGCAGCAGCATCCGAAATCGATGCGCTA
CCACCCGTCCCACACGACGAGCGGACAAGCGAGCTGGGGGCAGGAGTAGC
GGCATTGACGGTGTTGGGAGGTGCTTTAATGGTGGAGGCGCTGGGTCCTT
TGGTGCATGTAGACACCTGGCCGGCTACTGTGGTGCTGGTCGGAGCAGCA
GTAGCAGCAGGACTGGACTTAACGCAACGACAGGGGGAGGAGGTGAAGTT
GGTGCTGGCAGGATTGAGCAGGATGTTCATGAGGGATCCGGAGAGGGAGG
CGAGGGTGCAAGCGGCGACGTTTCTGAGTGCGTATTTGTTGGGGTTACCC
TGCTTTTGCTTCTCTCCAAATGTGTTGGAGGCGGTGAAGATGACGACGGA
CGTTCAGGAGTTTGCGGAAATGTTGTCTTCTCCGGTGGGAATGAATCGGG
TGCTGGTGTATATGTTGGCGCCTGTGGTGGTGGAGGAGGCGAATCACCTG
CAACTGATCGCTTCGGATCCGCGGCAGGCCCGGGCATTGGTGCAGGTGTG
TCGAGAAAGGAGGAGAGGGAGGGAGGGTGGGTGGGAGGGAGAAGCCGATG
AGAAGGAGGAGGAGAGATTATTGAGATGGGCGTATGAGGAGGCCAGGAGG
TTGGTGGGGATGAATAGTGGATTGTTAGAGAAGCTGAGGCAACGGATGGA
GAGTGGGGGTGCCACCGTAGGGGACTGTGTAGCCTTGTTGGAGTCAGGGG
GGGGAGGAGGAGGGGGAGGAGGAGGGAGGAGGAGTGACTAG
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Synonyms
Publications