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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr9 | genome | chr9:539921..542381 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G01730.1 vs.
Match: EWM27608.1 (cationic amino acid transporter [Nannochloropsis gaditana]) HSP 1 Score: 855.5 bits (2209), Expect = 9.300e-245 Identity = 439/574 (76.48%), Postives = 489/574 (85.19%), Query Frame = 0
Query: 11 SVSSDSDSASSGASLHAGNKPSLVPTRRTISSSNEG------------KGYFGRMFTTKSVDLLAEQGANSDMHRTLGAWDLTLLGVGEIVGTGIFVLTGTAAANNAGPAVVISFVIAGIASMFAALCYSELASIIPVAGSAYTYSYATLGSFIGWTIGWDLCLEYLVGAATVCVGWSAYLRSFLSACGYDMPSRWSRSPVGWDVQKGEFHITGDYVDLPAMAIALLMTTILVFGIKESARFNSVIVMIKIGVIIIFIIAMGPRVDRANWSPFVPPNEGRFGQYGVSGIFQGASVVFFSYIGFDSVSCCAQECKKPERDLPIGTLSSLAVCTVLYILVALIATGLLPYYEFKGVAHPISFAVEGIEGYKWLVMLINFGAIAGLTSVILVSLMSQPRIFYAMAVDGFVPAFCGKIHPKYKTPWVTTIITGALCSLCAGILPIEVLSELTSVGTLFAFVLVCVGVSVLRYRRPNLERKFKVPLGPWLIPGLGAASSFLLICTSTPQTIYRLFGWMAIGWIIYFVWGFQNSQKALERTSLNLPSRVIEPQGAEGGEVVGKKEGSMGEGGVAKVTADS 573
S + +DSA +G+S+ + PS +S + G K + GR+ TK +D L EQ ANS++HRTLGA+DLTLLGVGEIVGTGIFVLTGTAAAN+AGPAVV+SFVIAGIASMFAALCYSELASIIPVAGSAYTYSYATLGSF+GWTIGWDLCLEYLVGAATV VGWSAYLRSFL++ GYDMP++WSRSPVGWDV + F++TGDYVDLPAMAIAL+MT +LVFGIKESAR N+VIV IK+ VI+IFI AMGP VDR+NW PFVPPNEG FG+YG+SGIFQGASVVFFSYIGFDSVSCCAQECKKPERDLPIGTLSSLA+CT LYILVALIATGLLPYYEFKG+AHPIS+AVEGIEGY+WL M+IN GAIAGLTSVILVSLMSQPRIFYAMAVDGFVPAF K+HP+YKTPWVTTIITGALC+LCAGILPIEVLSELTSVGTLFAFVLVC+GVSVLRYRRPNLERKF+VP GPWLIPGLGA+ SFLLICTS+ TIYRL WMAIGWIIYFVWG +NSQK +ERT LP+R + +G + EG E GVA VT DS
Sbjct: 16 SATGSNDSADTGSSVSVRDNPSRKSAASLLSGGSTGGSCIDSLGGPKIKTFVGRLLKTKCMDALLEQVANSELHRTLGAFDLTLLGVGEIVGTGIFVLTGTAAANHAGPAVVLSFVIAGIASMFAALCYSELASIIPVAGSAYTYSYATLGSFVGWTIGWDLCLEYLVGAATVSVGWSAYLRSFLASVGYDMPTKWSRSPVGWDVHREAFYVTGDYVDLPAMAIALVMTGLLVFGIKESARINAVIVAIKLSVIVIFICAMGPHVDRSNWEPFVPPNEGTFGRYGISGIFQGASVVFFSYIGFDSVSCCAQECKKPERDLPIGTLSSLAICTTLYILVALIATGLLPYYEFKGIAHPISYAVEGIEGYEWLEMVINIGAIAGLTSVILVSLMSQPRIFYAMAVDGFVPAFAAKVHPRYKTPWVTTIITGALCALCAGILPIEVLSELTSVGTLFAFVLVCIGVSVLRYRRPNLERKFQVPFGPWLIPGLGASISFLLICTSSTHTIYRLMVWMAIGWIIYFVWGLENSQKVMERTI--LPNR----EHDDGNTL---NEGRGAETGVAMVTTDS 580
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G01730.1 ID=NO09G01730.1|Name=NO09G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp
CGGCTATCGCAGAGACTGTCTACCCGGATTATTAGATGCCTGAAATATTG
TGGAAGACTCGTCGGTCAGGCAGAGCACACCGTTTACGCAATTACAATAA
ACAACCCGCAAAAAGACAGGTGAAGTAGGAGCGGGCCCCGCAGCACTTTC
CAGGGCGCTCAAGCGTAAAGGCCAGCCACCAACACTCCTGCTGTCTGGCC
GGACGTTTCTTCTTTGCGCTAGTTCCTCGCGGGTCGCCCTCCGTGGAGCT
GGCCCCTCGTTCTTATGTGCGCGCCCGCAAGGGCCACTATCATCCATGCA
TAGTCAGGCTGTTGCTCACTGAAGCCTAGGCTGCATTTTCCCCATACTCC
AGAGGTTAAATTGACCGAACTCCCTTCGACCCTTCCTCCCCATCACCACA
CAGGCGCAGCAAGACATCTACGACGCGCCTTTCCCCTCTGCCTTGCTGGC
AGTCCACCACCCCCTCCCTTGGACAACACTACCAGCATCCATGGTGCCCT
CACCGCGCAAAATGGCATCCTCCGTTTCCAGTGATAGCGATAGTGCCAGC
AGCGGCGCAAGTCTCCATGCGGGGAACAAGCCAAGCCTTGTACCCACCCG
GCGAACAATCAGCAGCAGCAACGAGGGCAAGGGTTACTTCGGACGGATGT
TTACAACGAAAAGCGTGGATTTGTTGGCGGAGCAAGGGGCGAATTCCGAC
ATGCATCGCACGTTGGGCGCGTGGGACCTGACCCTGCTAGGGGTAGGTGA
GATTGTAGGAACGGGTATCTTCGTCTTGACTGGCACGGCGGCTGCGAATA
ACGCGGGGCCTGCCGTGGTGATTTCGTTTGTGATAGCGGGGATTGCGTCA
ATGTTTGCGGCGCTGTGCTATAGTGAGCTGGCATCGATTATTCCAGTTGC
GGGGTCGGCCTATACATACTCGTATGCAACGCTTGGGTCCTTTATTGGCT
GGACGATTGGGTGGGATTTGTGCTTGGAGTATCTGGTGGGGGCGGCGACT
GTATGTGTGGGATGGAGTGCGTATTTAAGGAGTTTCCTGTCGGCGTGTGG
ATATGATATGCCTTCGAGGTGGAGTCGAAGTCCTGTGGGCTGGGATGTGC
AGAAGGGGGAGTTCCACATTACGGGGGATTATGTAGATTTGCCCGCTATG
GCGATTGCATTGTTGATGACCACGATTTTGGTTTTTGGGATCAAGGAGAG
CGCGCGCTTTAACTCGGTGATCGTGATGATTAAGATTGGTGTGATCATTA
TTTTTATCATTGCCATGGGGCCCAGGGTGGATAGGGCGAATTGGTCGCCA
TTCGTGCCGCCGAATGAGGGGAGGTTCGGGCAGTATGGTGTGAGCGGGAT
TTTCCAGGGAGCGAGTGTGGTGTTCTTTAGTTACATCGGCTTCGATTCTG
TGAGCTGTTGTGCTCAAGAGTGCAAGAAGCCAGAGAGGGATTTGCCGATT
GGGACACTGAGTTCCTTGGCCGTGTGCACCGTGTTGTACATCTTGGTTGC
GTTGATTGCGACGGGCTTGCTGCCGTACTATGAATTCAAGGGAGTGGCGC
ACCCGATTTCGTTCGCCGTGGAGGGCATTGAAGGGTACAAGTGGTTGGTG
ATGTTAATTAATTTCGGGGCGATTGCTGGGTTGACCAGTGTGATTTTGGT
GAGTCTGATGAGCCAGCCGCGGATTTTCTATGCCATGGCTGTGGATGGAT
TTGTGCCGGCGTTTTGTGGAAAGATCCATCCCAAGTATAAGACGCCGTGG
GTCACGACGATTATCACGGGGGCGTTGTGTTCTCTGTGTGCGGGAATCTT
GCCAATTGAGGTCTTGAGTGAGTTGACGTCGGTGGGGACGCTGTTTGCTT
TTGTCCTGGTGTGTGTGGGTGTCTCCGTGTTGCGGTATCGCAGGCCGAAT
CTGGAGAGGAAATTCAAAGTTCCTTTGGGCCCGTGGCTCATTCCAGGGTT
GGGGGCGGCGTCCAGCTTCTTGTTGATTTGCACATCAACCCCGCAGACGA
TTTATCGGTTGTTTGGGTGGATGGCCATTGGCTGGATAATTTACTTTGTG
TGGGGGTTTCAGAATTCCCAAAAGGCGCTTGAAAGGACGAGTCTCAATTT
GCCGAGTCGAGTGATTGAGCCACAAGGCGCGGAGGGCGGGGAGGTGGTGG
GGAAGAAGGAAGGATCGATGGGGGAGGGAGGGGTGGCGAAAGTGACGGCG
GATTCGTAGAGGAAAGAACCCAGGGGAAAGACTTAAGGGGCGGGGATCAT
AAGTAGGCTGGAAAAGGAGTAAGCGAACATAAATGATGTCTGATATAGAT
TTGAAGCACCAAAAACAAAAAGCAAAATGGTTGCCTCCTATAGAATGTAC
AGTCCTCTGGGGGTAAAGAACCTGTCAGAGGGAAGAAAAAGACGCATGCG
AACAGATAAAAATACCCAAAAAGGGATCGCAAAGAAGAAATGAGCCTGAA
CTTACTAAGTA back to topprotein sequence of NO09G01730.1 >NO09G01730.1-protein ID=NO09G01730.1-protein|Name=NO09G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MVPSPRKMASSVSSDSDSASSGASLHAGNKPSLVPTRRTISSSNEGKGYF
GRMFTTKSVDLLAEQGANSDMHRTLGAWDLTLLGVGEIVGTGIFVLTGTA
AANNAGPAVVISFVIAGIASMFAALCYSELASIIPVAGSAYTYSYATLGS
FIGWTIGWDLCLEYLVGAATVCVGWSAYLRSFLSACGYDMPSRWSRSPVG
WDVQKGEFHITGDYVDLPAMAIALLMTTILVFGIKESARFNSVIVMIKIG
VIIIFIIAMGPRVDRANWSPFVPPNEGRFGQYGVSGIFQGASVVFFSYIG
FDSVSCCAQECKKPERDLPIGTLSSLAVCTVLYILVALIATGLLPYYEFK
GVAHPISFAVEGIEGYKWLVMLINFGAIAGLTSVILVSLMSQPRIFYAMA
VDGFVPAFCGKIHPKYKTPWVTTIITGALCSLCAGILPIEVLSELTSVGT
LFAFVLVCVGVSVLRYRRPNLERKFKVPLGPWLIPGLGAASSFLLICTST
PQTIYRLFGWMAIGWIIYFVWGFQNSQKALERTSLNLPSRVIEPQGAEGG
EVVGKKEGSMGEGGVAKVTADS* back to topmRNA from alignment at chr9:539921..542381+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G01730.1 ID=NO09G01730.1|Name=NO09G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp|location=Sequence derived from alignment at chr9:539921..542381+ (Nannochloropsis oceanica)
CGGCTATCGCAGAGACTGTCTACCCGGATTATTAGATGCCTGAAATATTG
TGGAAGACTCGTCGGTCAGGCAGAGCACACCGTTTACGCAATTACAATAA
ACAACCCGCAAAAAGACAGGTGAAGTAGGAGCGGGCCCCGCAGCACTTTC
CAGGGCGCTCAAGCGTAAAGGCCAGCCACCAACACTCCTGCTGTCTGGCC
GGACGTTTCTTCTTTGCGCTAGTTCCTCGCGGGTCGCCCTCCGTGGAGCT
GGCCCCTCGTTCTTATGTGCGCGCCCGCAAGGGCCACTATCATCCATGCA
TAGTCAGGCTGTTGCTCACTGAAGCCTAGGCTGCATTTTCCCCATACTCC
AGAGGTTAAATTGACCGAACTCCCTTCGACCCTTCCTCCCCATCACCACA
CAGGCGCAGCAAGACATCTACGACGCGCCTTTCCCCTCTGCCTTGCTGGC
AGTCCACCACCCCCTCCCTTGGACAACACTACCAGCATCCATGGTGCCCT
CACCGCGCAAAATGGCATCCTCCGTTTCCAGTGATAGCGATAGTGCCAGC
AGCGGCGCAAGTCTCCATGCGGGGAACAAGCCAAGCCTTGTACCCACCCG
GCGAACAATCAGCAGCAGCAACGAGGGCAAGGGTTACTTCGGACGGATGT
TTACAACGAAAAGCGTGGATTTGTTGGCGGAGCAAGGGGCGAATTCCGAC
ATGCATCGCACGTTGGGCGCGTGGGACCTGACCCTGCTAGGGGTAGGTGA
GATTGTAGGAACGGGTATCTTCGTCTTGACTGGCACGGCGGCTGCGAATA
ACGCGGGGCCTGCCGTGGTGATTTCGTTTGTGATAGCGGGGATTGCGTCA
ATGTTTGCGGCGCTGTGCTATAGTGAGCTGGCATCGATTATTCCAGTTGC
GGGGTCGGCCTATACATACTCGTATGCAACGCTTGGGTCCTTTATTGGCT
GGACGATTGGGTGGGATTTGTGCTTGGAGTATCTGGTGGGGGCGGCGACT
GTATGTGTGGGATGGAGTGCGTATTTAAGGAGTTTCCTGTCGGCGTGTGG
ATATGATATGCCTTCGAGGTGGAGTCGAAGTCCTGTGGGCTGGGATGTGC
AGAAGGGGGAGTTCCACATTACGGGGGATTATGTAGATTTGCCCGCTATG
GCGATTGCATTGTTGATGACCACGATTTTGGTTTTTGGGATCAAGGAGAG
CGCGCGCTTTAACTCGGTGATCGTGATGATTAAGATTGGTGTGATCATTA
TTTTTATCATTGCCATGGGGCCCAGGGTGGATAGGGCGAATTGGTCGCCA
TTCGTGCCGCCGAATGAGGGGAGGTTCGGGCAGTATGGTGTGAGCGGGAT
TTTCCAGGGAGCGAGTGTGGTGTTCTTTAGTTACATCGGCTTCGATTCTG
TGAGCTGTTGTGCTCAAGAGTGCAAGAAGCCAGAGAGGGATTTGCCGATT
GGGACACTGAGTTCCTTGGCCGTGTGCACCGTGTTGTACATCTTGGTTGC
GTTGATTGCGACGGGCTTGCTGCCGTACTATGAATTCAAGGGAGTGGCGC
ACCCGATTTCGTTCGCCGTGGAGGGCATTGAAGGGTACAAGTGGTTGGTG
ATGTTAATTAATTTCGGGGCGATTGCTGGGTTGACCAGTGTGATTTTGGT
GAGTCTGATGAGCCAGCCGCGGATTTTCTATGCCATGGCTGTGGATGGAT
TTGTGCCGGCGTTTTGTGGAAAGATCCATCCCAAGTATAAGACGCCGTGG
GTCACGACGATTATCACGGGGGCGTTGTGTTCTCTGTGTGCGGGAATCTT
GCCAATTGAGGTCTTGAGTGAGTTGACGTCGGTGGGGACGCTGTTTGCTT
TTGTCCTGGTGTGTGTGGGTGTCTCCGTGTTGCGGTATCGCAGGCCGAAT
CTGGAGAGGAAATTCAAAGTTCCTTTGGGCCCGTGGCTCATTCCAGGGTT
GGGGGCGGCGTCCAGCTTCTTGTTGATTTGCACATCAACCCCGCAGACGA
TTTATCGGTTGTTTGGGTGGATGGCCATTGGCTGGATAATTTACTTTGTG
TGGGGGTTTCAGAATTCCCAAAAGGCGCTTGAAAGGACGAGTCTCAATTT
GCCGAGTCGAGTGATTGAGCCACAAGGCGCGGAGGGCGGGGAGGTGGTGG
GGAAGAAGGAAGGATCGATGGGGGAGGGAGGGGTGGCGAAAGTGACGGCG
GATTCGTAGAGGAAAGAACCCAGGGGAAAGACTTAAGGGGCGGGGATCAT
AAGTAGGCTGGAAAAGGAGTAAGCGAACATAAATGATGTCTGATATAGAT
TTGAAGCACCAAAAACAAAAAGCAAAATGGTTGCCTCCTATAGAATGTAC
AGTCCTCTGGGGGTAAAGAACCTGTCAGAGGGAAGAAAAAGACGCATGCG
AACAGATAAAAATACCCAAAAAGGGATCGCAAAGAAGAAATGAGCCTGAA
CTTACTAAGTA back to topCoding sequence (CDS) from alignment at chr9:539921..542381+ >NO09G01730.1 ID=NO09G01730.1|Name=NO09G01730.1|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr9:539921..542381+ (Nannochloropsis oceanica)
ATGGTGCCCTCACCGCGCAAAATGGCATCCTCCGTTTCCAGTGATAGCGA
TAGTGCCAGCAGCGGCGCAAGTCTCCATGCGGGGAACAAGCCAAGCCTTG
TACCCACCCGGCGAACAATCAGCAGCAGCAACGAGGGCAAGGGTTACTTC
GGACGGATGTTTACAACGAAAAGCGTGGATTTGTTGGCGGAGCAAGGGGC
GAATTCCGACATGCATCGCACGTTGGGCGCGTGGGACCTGACCCTGCTAG
GGGTAGGTGAGATTGTAGGAACGGGTATCTTCGTCTTGACTGGCACGGCG
GCTGCGAATAACGCGGGGCCTGCCGTGGTGATTTCGTTTGTGATAGCGGG
GATTGCGTCAATGTTTGCGGCGCTGTGCTATAGTGAGCTGGCATCGATTA
TTCCAGTTGCGGGGTCGGCCTATACATACTCGTATGCAACGCTTGGGTCC
TTTATTGGCTGGACGATTGGGTGGGATTTGTGCTTGGAGTATCTGGTGGG
GGCGGCGACTGTATGTGTGGGATGGAGTGCGTATTTAAGGAGTTTCCTGT
CGGCGTGTGGATATGATATGCCTTCGAGGTGGAGTCGAAGTCCTGTGGGC
TGGGATGTGCAGAAGGGGGAGTTCCACATTACGGGGGATTATGTAGATTT
GCCCGCTATGGCGATTGCATTGTTGATGACCACGATTTTGGTTTTTGGGA
TCAAGGAGAGCGCGCGCTTTAACTCGGTGATCGTGATGATTAAGATTGGT
GTGATCATTATTTTTATCATTGCCATGGGGCCCAGGGTGGATAGGGCGAA
TTGGTCGCCATTCGTGCCGCCGAATGAGGGGAGGTTCGGGCAGTATGGTG
TGAGCGGGATTTTCCAGGGAGCGAGTGTGGTGTTCTTTAGTTACATCGGC
TTCGATTCTGTGAGCTGTTGTGCTCAAGAGTGCAAGAAGCCAGAGAGGGA
TTTGCCGATTGGGACACTGAGTTCCTTGGCCGTGTGCACCGTGTTGTACA
TCTTGGTTGCGTTGATTGCGACGGGCTTGCTGCCGTACTATGAATTCAAG
GGAGTGGCGCACCCGATTTCGTTCGCCGTGGAGGGCATTGAAGGGTACAA
GTGGTTGGTGATGTTAATTAATTTCGGGGCGATTGCTGGGTTGACCAGTG
TGATTTTGGTGAGTCTGATGAGCCAGCCGCGGATTTTCTATGCCATGGCT
GTGGATGGATTTGTGCCGGCGTTTTGTGGAAAGATCCATCCCAAGTATAA
GACGCCGTGGGTCACGACGATTATCACGGGGGCGTTGTGTTCTCTGTGTG
CGGGAATCTTGCCAATTGAGGTCTTGAGTGAGTTGACGTCGGTGGGGACG
CTGTTTGCTTTTGTCCTGGTGTGTGTGGGTGTCTCCGTGTTGCGGTATCG
CAGGCCGAATCTGGAGAGGAAATTCAAAGTTCCTTTGGGCCCGTGGCTCA
TTCCAGGGTTGGGGGCGGCGTCCAGCTTCTTGTTGATTTGCACATCAACC
CCGCAGACGATTTATCGGTTGTTTGGGTGGATGGCCATTGGCTGGATAAT
TTACTTTGTGTGGGGGTTTCAGAATTCCCAAAAGGCGCTTGAAAGGACGA
GTCTCAATTTGCCGAGTCGAGTGATTGAGCCACAAGGCGCGGAGGGCGGG
GAGGTGGTGGGGAAGAAGGAAGGATCGATGGGGGAGGGAGGGGTGGCGAA
AGTGACGGCGGATTCGTAG back to top
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