NO09G01720.1, NO09G01720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01720.1
Unique NameNO09G01720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2214
Alignment locationchr9:537202..539488 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:537202..539488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01720.1 vs.
Match: EWM27613.1 (hypothetical protein Naga_100069g21 [Nannochloropsis gaditana])

HSP 1 Score: 269.6 bits (688), Expect = 1.600e-68
Identity = 150/283 (53.00%), Postives = 189/283 (66.78%), Query Frame = 0 
Query:    1 MAEGGLLYWRRQRHDGTKYQDFDELIRPLPPPPQGMMWIKTRIVIAETSEE---EEEGAEYQKGEEVSEGGQNEKEMQQDSGGLPTATLVEGEEVDTAVPQVRPPRFVTRWELVERASVSNGCDDYEGGGS-GKNLQGGDEDYDVSEGGEDGEGKR-PAFLTHVVLPTDTMQGLRLRYKVTPADLRLHNDFAGDQFHMLQTLKIPLRQEVVSHVAKFRQRPTQAVLRQRFTNVTKCTDEQEVTYYLDLAEWNLSGAIAEYNENRAWEEAHHARVQ-MACLPNP 278
            MAEGGLL WRRQRHDGTKYQDF+E+++PLPPPP+G+MW KTR+ + +       E +     +GE     G        D      A +VE   +D A  Q    R+ TRWELVE+   +   D  EGGG+ G     G E  +   G ++ EG   PAFLTHVVLPTDTM GLRLRYKVT A+LR+ NDF G+QFHMLQTL+IPL+++   HV K RQRPT+AVLRQ+F N T+CTDE+E+TYYLD A+W L  A+AE+ E+RAWE AH AR++ +  LPNP
Sbjct:    1 MAEGGLLPWRRQRHDGTKYQDFEEMLKPLPPPPEGLMWRKTRVSVEDDGSPVGFEMDLGFPVEGEGKIAAGHRVGNNAADHDRGKNAEVVE--VLDGAQGQGVRTRYATRWELVEKTMKAKVADAEEGGGADGGENAVGQEMEEAGLGEDEVEGATAPAFLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHMLQTLQIPLKRDSAGHVLKHRQRPTRAVLRQQFINATRCTDEEEITYYLDAADWRLEAAVAEHREDRAWEAAHLARMEKVISLPNP 281
The following BLAST results are available for this feature:
BLAST of NO09G01720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27613.11.600e-6853.00hypothetical protein Naga_100069g21 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01720NO09G01720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01720.1NO09G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01720.1.cds1NO09G01720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01720.1.cds2NO09G01720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01720.1 ID=NO09G01720.1|Name=NO09G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2214bp
CTGTGTTGGGTTCAGGTGGATGCTTTGGTGTGGGACTTCAGGAATGAGAG
GGGTTGGGGCACCGGCTTCCAGGGGTGGGGAGAACGGATATCAAATTATC
AAAATGAGCTGCGTTGGCACATTCCTTCCATCAAACAACAGAAAGCAAGC
AATTGGCAAGACTCTTAAACTGTTGCCATTTCATCAAAACCCCAATTACA
GCTGCCATGGTGGAAAATGGTTTCTCGTACAGGCGCCGGCAAGCGACATT
CACTCACCGCCGCTTTTCGCTCTCAACTTACACACACGTACACACAGCGA
CTAATTGAATCAGACGTGGCGGAGGGCGGCCTCGTCTACGGGCGCCGGCA
GGCAAGACTCATTTACCGCCGCATTTTGTTCGACACACACAGCAATCAGC
AATGGCTGAAGGTGGCTTATTGTACTGGCGGCGGCAGCGTCATGACGGCA
CCAAGTACCAAGACTTCGACGAGCTGATTCGACCTCTTCCCCCGCCTCCT
CAGGGAATGATGTGGATCAAGACTCGCATAGTAATAGCGGAAACAAGTGA
GGAGGAGGAGGAAGGGGCAGAGTACCAGAAGGGAGAGGAGGTCTCAGAAG
GGGGACAGAACGAGAAAGAGATGCAGCAAGACAGCGGCGGTCTTCCCACT
GCCACGCTTGTAGAGGGAGAGGAGGTAGATACTGCCGTTCCTCAAGTGCG
GCCCCCGCGCTTCGTCACGCGATGGGAGCTTGTCGAACGTGCCTCGGTAT
CCAATGGCTGCGACGATTACGAGGGTGGGGGAAGCGGGAAGAACTTACAA
GGGGGCGACGAGGACTACGATGTGTCAGAGGGCGGGGAAGACGGGGAGGG
GAAGAGGCCGGCGTTTCTGACTCACGTAGTTTTGCCCACTGATACCATGC
AAGGCTTACGTTTGCGTTATAAAGTGACGCCGGCCGATCTGAGGCTGCAC
AATGATTTTGCTGGAGACCAGTTCCACATGCTGCAGACTTTAAAGATCCC
TTTGAGGCAGGAAGTTGTCAGCCACGTAGCCAAGTTCCGCCAGCGTCCAA
CGCAAGCCGTGCTCCGACAGCGCTTCACCAACGTAACCAAATGCACGGAT
GAGCAGGAGGTTACTTATTACCTTGACCTTGCCGAGTGGAACCTCTCTGG
AGCTATCGCGGAATACAACGAGAATCGAGCATGGGAGGAAGCGCATCATG
CGCGCGTGCAAATGGCGTGTCTCCCTAATCCCTCACCTCTGCCCTTTTCG
ATTCAGGCAGCAACAGTGGCAGCTGCAGCAGCTGCAGGAGGAGCACCTGC
GGAAGCATCTGCAGAAGGAGGAACGGTCTCATGGGCCTTTTTGACCAATA
CCTTCCTCGCTAGCGGCAGTAGTACGTCCATGACGAGTCAGGAGAGCATC
CCCCCCCTTCTTATTCGTCTTTCTTTCGTGTCCCACGTCGAGGCGCTCAG
GAGAAGAAGAAGAAGAAGAAGTGCGCGGAGAGTGGGGGGTATTTACTTTC
TTGGTCGAAATTGGGTCGGAAGAAACAGGCAAATAAAGCAGTCTATGATA
TGGCTACTTTCGTCGAAGAGGACTATGTCATCCTGCCTGGTGCCGAGATG
GAGGGGGAGAAGGTGGATGAGTTGGAAGACGTTGATGAGCAGGGATCCGT
GGTAGAACCCGTAGCGTCTCTGCTGCCGTCGTCGGCGGGGGGATTGAGAG
GGGGAGGCGAACGTGTGGCTATTGTGACTGGGGAGGATGACCACCCGCAG
ACGCCCTTGTTGGCGCGGGCAGCTGTGCGGGAGTAAATATTAATGATGTG
TGCATGATATGTAAATGGATACGCTTGTATAGGAGAGGATGAGAAGAGGG
GAGTTGTACTATGTGTGTGTGTCTGTGTGTGTGTGTCTTTCGTGTGTGTT
CGTCTGGGTGACTATGCGACATAGTGTCGGTTTTCTTCGGCATGCATTCT
TTTGGAGAGTGCTTTTCAGAGACACAAGTCAAGTCAAGTCAAGTATGCGT
GTGTGAGAAACATCACTAGACCGCAACGTCGCGGTTGGCCATTATGCCCC
CGTCATCCAAGTAGATTGGTTCACTTTCTATTGTCGCTCTTCTCGCACAC
AGCGCCATTGAGCATTCACTCTGGCACTCAAAACAAGGGAAATAAATATC
GACAAGTGTATCATCAAAGCGTGTGACCTTCTTGTTTGACGCAATTTCGG
GTTTTTGCTCTCCC
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protein sequence of NO09G01720.1

>NO09G01720.1-protein ID=NO09G01720.1-protein|Name=NO09G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MAEGGLLYWRRQRHDGTKYQDFDELIRPLPPPPQGMMWIKTRIVIAETSE
EEEEGAEYQKGEEVSEGGQNEKEMQQDSGGLPTATLVEGEEVDTAVPQVR
PPRFVTRWELVERASVSNGCDDYEGGGSGKNLQGGDEDYDVSEGGEDGEG
KRPAFLTHVVLPTDTMQGLRLRYKVTPADLRLHNDFAGDQFHMLQTLKIP
LRQEVVSHVAKFRQRPTQAVLRQRFTNVTKCTDEQEVTYYLDLAEWNLSG
AIAEYNENRAWEEAHHARVQMACLPNPSPLPFSIQAATVAAAAAAGGAPA
EASAEGGTVSWAFLTNTFLASGSSTSMTSQESIPPLLIRLSFVSHVEALR
RRRRRRSARRVGGIYFLGRNWVGRNRQIKQSMIWLLSSKRTMSSCLVPRW
RGRRWMSWKTLMSRDPW*
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mRNA from alignment at chr9:537202..539488+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01720.1 ID=NO09G01720.1|Name=NO09G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2287bp|location=Sequence derived from alignment at chr9:537202..539488+ (Nannochloropsis oceanica)
CTGTGTTGGGTTCAGGTGGATGCTTTGGTGTGGGACTTCAGGAATGAGAG
GGGTTGGGGCACCGGCTTCCAGGGGTGGGGAGAACGGATATCAAATTATC
AAAATGAGCTGCGTTGGCACATTCCTTCCATCAAACAACAGAAAGCAAGC
AATTGGCAAGACTCTTAAACTGTTGCCATTTCATCAAAACCCCAATTACA
GCTGCCATGGTGGAAAATGGTTTCTCGTACAGGCGCCGGCAAGCGACATT
CACTCACCGCCGCTTTTCGCTCTCAACTTACACACACGTACACACAGCGA
CTAATTGAATCAGACGTGGCGGAGGGCGGCCTCGTCTACGGGCGCCGGCA
GGCAAGACTCATTTACCGCCGCATTTTGTTCGACACACACAGCAATCAGC
AATGGCTGAAGGTGGCTTATTGTACTGGCGGCGGCAGCGTCATGACGGCA
CCAAGTACCAAGACTTCGACGAGCTGATTCGACCTCTTCCCCCGCCTCCT
CAGGGAATGATGTGGATCAAGACTCGCATAGTAATAGCGGAAACAAGTGA
GGAGGAGGAGGAAGGGGCAGAGTACCAGAAGGGAGAGGAGGTCTCAGAAG
GGGGACAGAACGAGAAAGAGATGCAGCAAGACAGCGGCGGTCTTCCCACT
GCCACGCTTGTAGAGGGAGAGGAGGTAGATACTGCCGTTCCTCAAGTGCG
GCCCCCGCGCTTCGTCACGCGATGGGAGCTTGTCGAACGTGCCTCGGTAT
CCAATGGCTGCGACGATTACGAGGGTGGGGGAAGCGGGAAGAACTTACAA
GGGGGCGACGAGGACTACGATGTGTCAGAGGGCGGGGAAGACGGGGAGGG
GAAGAGGCCGGCGTTTCTGACTCACGTAGTTTTGCCCACTGATACCATGC
AAGGCTTACGTTTGCGTTATAAAGTGACGCCGGCCGATCTGAGGCTGCAC
AATGATTTTGCTGGAGACCAGTTCCACATGCTGCAGACTTTAAAGGTACG
ACGAGTGCACATTCGCGTCTGTCTTGCTCTCTCCCACTCACCCTCCTTCT
CTCCCTCACTCCTCCCAGATCCCTTTGAGGCAGGAAGTTGTCAGCCACGT
AGCCAAGTTCCGCCAGCGTCCAACGCAAGCCGTGCTCCGACAGCGCTTCA
CCAACGTAACCAAATGCACGGATGAGCAGGAGGTTACTTATTACCTTGAC
CTTGCCGAGTGGAACCTCTCTGGAGCTATCGCGGAATACAACGAGAATCG
AGCATGGGAGGAAGCGCATCATGCGCGCGTGCAAATGGCGTGTCTCCCTA
ATCCCTCACCTCTGCCCTTTTCGATTCAGGCAGCAACAGTGGCAGCTGCA
GCAGCTGCAGGAGGAGCACCTGCGGAAGCATCTGCAGAAGGAGGAACGGT
CTCATGGGCCTTTTTGACCAATACCTTCCTCGCTAGCGGCAGTAGTACGT
CCATGACGAGTCAGGAGAGCATCCCCCCCCTTCTTATTCGTCTTTCTTTC
GTGTCCCACGTCGAGGCGCTCAGGAGAAGAAGAAGAAGAAGAAGTGCGCG
GAGAGTGGGGGGTATTTACTTTCTTGGTCGAAATTGGGTCGGAAGAAACA
GGCAAATAAAGCAGTCTATGATATGGCTACTTTCGTCGAAGAGGACTATG
TCATCCTGCCTGGTGCCGAGATGGAGGGGGAGAAGGTGGATGAGTTGGAA
GACGTTGATGAGCAGGGATCCGTGGTAGAACCCGTAGCGTCTCTGCTGCC
GTCGTCGGCGGGGGGATTGAGAGGGGGAGGCGAACGTGTGGCTATTGTGA
CTGGGGAGGATGACCACCCGCAGACGCCCTTGTTGGCGCGGGCAGCTGTG
CGGGAGTAAATATTAATGATGTGTGCATGATATGTAAATGGATACGCTTG
TATAGGAGAGGATGAGAAGAGGGGAGTTGTACTATGTGTGTGTGTCTGTG
TGTGTGTGTCTTTCGTGTGTGTTCGTCTGGGTGACTATGCGACATAGTGT
CGGTTTTCTTCGGCATGCATTCTTTTGGAGAGTGCTTTTCAGAGACACAA
GTCAAGTCAAGTCAAGTATGCGTGTGTGAGAAACATCACTAGACCGCAAC
GTCGCGGTTGGCCATTATGCCCCCGTCATCCAAGTAGATTGGTTCACTTT
CTATTGTCGCTCTTCTCGCACACAGCGCCATTGAGCATTCACTCTGGCAC
TCAAAACAAGGGAAATAAATATCGACAAGTGTATCATCAAAGCGTGTGAC
CTTCTTGTTTGACGCAATTTCGGGTTTTTGCTCTCCC
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Coding sequence (CDS) from alignment at chr9:537202..539488+

>NO09G01720.1 ID=NO09G01720.1|Name=NO09G01720.1|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at chr9:537202..539488+ (Nannochloropsis oceanica)
ATGGCTGAAGGTGGCTTATTGTACTGGCGGCGGCAGCGTCATGACGGCAC
CAAGTACCAAGACTTCGACGAGCTGATTCGACCTCTTCCCCCGCCTCCTC
AGGGAATGATGTGGATCAAGACTCGCATAGTAATAGCGGAAACAAGTGAG
GAGGAGGAGGAAGGGGCAGAGTACCAGAAGGGAGAGGAGGTCTCAGAAGG
GGGACAGAACGAGAAAGAGATGCAGCAAGACAGCGGCGGTCTTCCCACTG
CCACGCTTGTAGAGGGAGAGGAGGTAGATACTGCCGTTCCTCAAGTGCGG
CCCCCGCGCTTCGTCACGCGATGGGAGCTTGTCGAACGTGCCTCGGTATC
CAATGGCTGCGACGATTACGAGGGTGGGGGAAGCGGGAAGAACTTACAAG
GGGGCGACGAGGACTACGATGTGTCAGAGGGCGGGGAAGACGGGGAGGGG
AAGAGGCCGGCGTTTCTGACTCACGTAGTTTTGCCCACTGATACCATGCA
AGGCTTACGTTTGCGTTATAAAGTGACGCCGGCCGATCTGAGGCTGCACA
ATGATTTTGCTGGAGACCAGTTCCACATGCTGCAGACTTTAAAGATCCCT
TTGAGGCAGGAAGTTGTCAGCCACGTAGCCAAGTTCCGCCAGCGTCCAAC
GCAAGCCGTGCTCCGACAGCGCTTCACCAACGTAACCAAATGCACGGATG
AGCAGGAGGTTACTTATTACCTTGACCTTGCCGAGTGGAACCTCTCTGGA
GCTATCGCGGAATACAACGAGAATCGAGCATGGGAGGAAGCGCATCATGC
GCGCGTGCAAATGGCGTGTCTCCCTAATCCCTCACCTCTGCCCTTTTCGA
TTCAGGCAGCAACAGTGGCAGCTGCAGCAGCTGCAGGAGGAGCACCTGCG
GAAGCATCTGCAGAAGGAGGAACGGTCTCATGGGCCTTTTTGACCAATAC
CTTCCTCGCTAGCGGCAGTAGTACGTCCATGACGAGTCAGGAGAGCATCC
CCCCCCTTCTTATTCGTCTTTCTTTCGTGTCCCACGTCGAGGCGCTCAGG
AGAAGAAGAAGAAGAAGAAGTGCGCGGAGAGTGGGGGGTATTTACTTTCT
TGGTCGAAATTGGGTCGGAAGAAACAGGCAAATAAAGCAGTCTATGATAT
GGCTACTTTCGTCGAAGAGGACTATGTCATCCTGCCTGGTGCCGAGATGG
AGGGGGAGAAGGTGGATGAGTTGGAAGACGTTGATGAGCAGGGATCCGTG
GTAG
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Synonyms
Publications