NO09G01680.1, NO09G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01680.1
Unique NameNO09G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1103
Alignment locationchr9:524367..525739 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:524367..525739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01680.1 vs.
Match: EWM27559.1 (membrane protein [Nannochloropsis gaditana])

HSP 1 Score: 456.1 bits (1172), Expect = 8.200e-125
Identity = 209/282 (74.11%), Postives = 238/282 (84.40%), Query Frame = 0 
Query:    1 MFKLVSILGVAGFMQAVALPFGLGKLAFFCLGIQWLAFIPAFKWKTEFFYDLTGSLTFLATIFLSLYAGAWPPHPRQQMASLLIMVWAFRLGYFLFTRIIQHGKDSRFDTVKHDALLFLQYWSVQGLWVFLTCLPVLICATKKGEGVRNPAWPIPSDLVGMLVFLVGMGVEMGADFQKYQWQNDWQHRDEFINTGLWSWSRHPNYAGEMTLHLGVFLLASGSYTRPLEWVCAAMGPTFIVLLLYKVSLPMLEKRANARWKDNKMYKVYMQRTPAILPGVPEW 283
            M   +SILGVAGFM+AVA P GL   A FCL +QWLAFIPA+ W+TE FYDLTGSLTFLAT+FL+LY G WPPHPRQQMAS  IMVWAFRLGYFLFTRI+QHGKDSRFDTVKH+ L FLQYW+VQGLWVFLTCLPVLIC+TKK   +RNP WP+PSDL+GMLVF +G+G+EM ADFQK+QWQNDWQHRD+FIN GLW +SRHPNYAGE+ LH GV LLASGSY RP+EW  A +GP FI  LLY +SLPM+E++AN RWKDN  YK YMQ+TPAI P  P+W
Sbjct:    1 MSTALSILGVAGFMEAVATPLGLWTPATFCLVVQWLAFIPAYFWRTEMFYDLTGSLTFLATMFLNLYHGPWPPHPRQQMASFFIMVWAFRLGYFLFTRILQHGKDSRFDTVKHEPLRFLQYWTVQGLWVFLTCLPVLICSTKKDSNMRNPDWPVPSDLIGMLVFSLGLGLEMLADFQKFQWQNDWQHRDDFINIGLWRYSRHPNYAGEIVLHCGVLLLASGSYDRPVEWGLALLGPGFITTLLYGISLPMVERKANIRWKDNTSYKTYMQKTPAIFP-FPKW 281
The following BLAST results are available for this feature:
BLAST of NO09G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27559.18.200e-12574.11membrane protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01680NO09G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01680.1NO09G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01680.1.cds1NO09G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01680.1.cds2NO09G01680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01680.1 ID=NO09G01680.1|Name=NO09G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1103bp
AGACCTACACAGGCATATCTCTCTCTTTTTTGCAGCTATTGAAATTTGCC
GGCATGTTCAAGCTTGTTTCCATCCTCGGCGTGGCCGGCTTCATGCAAGC
CGTCGCCTTGCCGTTCGGTTTGGGAAAACTCGCTTTCTTTTGCCTGGGCA
TCCAGTGGCTGGCTTTCATTCCCGCCTTCAAATGGAAGACGGAGTTTTTC
TACGACTTGACCGGTTCCCTGACTTTCCTTGCCACCATATTTTTGAGTCT
GTATGCCGGCGCATGGCCTCCACACCCCCGCCAACAGATGGCCTCGCTCC
TTATTATGGTGTGGGCGTTTCGATTGGGTTATTTTTTGTTTACCCGCATC
ATACAGCATGGCAAGGACTCGCGTTTTGACACTGTGAAGCACGATGCGTT
GTTGTTTCTTCAATATTGGAGTGTGCAGGGATTGTGGGTATTCTTGACAT
GCTTGCCTGTTTTAATCTGTGCGACGAAGAAAGGGGAGGGAGTGCGTAAC
CCAGCGTGGCCTATTCCAAGCGATTTAGTGGGGATGCTTGTGTTTTTGGT
AGGCATGGGCGTGGAGATGGGGGCGGATTTTCAGAAGTACCAATGGCAGA
ACGACTGGCAGCACCGCGACGAATTCATCAATACGGGCCTGTGGTCTTGG
TCGAGGCATCCGAATTACGCGGGGGAAATGACGTTGCACCTTGGAGTGTT
CCTGTTGGCTTCTGGATCGTACACCCGACCGTTGGAATGGGTGTGCGCGG
CCATGGGGCCCACGTTCATTGTTTTGTTATTGTACAAGGTTAGCCTGCCC
ATGCTGGAGAAAAGGGCAAATGCCAGGTGGAAGGATAATAAGATGTATAA
GGTGTATATGCAGCGGACACCGGCGATTCTCCCAGGGGTGCCCGAGTGGT
TCTAAGACGAGGGAGGGGAGGAGGGAGGAGGGAGGGGGGAAAACGGACCA
GGATTCAAAGGAGAGGGAGGAGGGAAAGGGGATCGGGAAGGAGGCATTTA
ATTTAAAGACTCATACTTCGAAGATCAAAATTAGCGCGAGGCAAAAAGGA
AAAGAAGCAGGGGGGTTAAAGAAGTGCAGCTGCAGCTGCTGCTGCTTTTA
TAA
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protein sequence of NO09G01680.1

>NO09G01680.1-protein ID=NO09G01680.1-protein|Name=NO09G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MFKLVSILGVAGFMQAVALPFGLGKLAFFCLGIQWLAFIPAFKWKTEFFY
DLTGSLTFLATIFLSLYAGAWPPHPRQQMASLLIMVWAFRLGYFLFTRII
QHGKDSRFDTVKHDALLFLQYWSVQGLWVFLTCLPVLICATKKGEGVRNP
AWPIPSDLVGMLVFLVGMGVEMGADFQKYQWQNDWQHRDEFINTGLWSWS
RHPNYAGEMTLHLGVFLLASGSYTRPLEWVCAAMGPTFIVLLLYKVSLPM
LEKRANARWKDNKMYKVYMQRTPAILPGVPEWF*
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mRNA from alignment at chr9:524367..525739-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01680.1 ID=NO09G01680.1|Name=NO09G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp|location=Sequence derived from alignment at chr9:524367..525739- (Nannochloropsis oceanica)
AGACCTACACAGGCATATCTCTCTCTTTTTTGCAGCTATTGAAATTTGCC
GGCATGTTCAAGGTAAGCGCCTATACTCCAAGCTCTTGTCTTCCCCCTCT
CCCCTTACCTTCATCGAGCTTCTGCTTCATCGCCCAGCATGGCCCACCTT
TCCAAGGCACACACGTGAGTTTGCGTCCACAGGAAGCGAAAATCCTGCCT
CGTCCCCCGTTCGCTCTTCTCCACAAGCAGCCAGCACAGTCTCGTCAATT
CCCATACATGCTCGCCTTCCCTTTCTCACTCGGGTCCCAACTGCCTCCCT
CACTCCGCCCCCTCCGTCTCACACTTCTCCAGCTTGTTTCCATCCTCGGC
GTGGCCGGCTTCATGCAAGCCGTCGCCTTGCCGTTCGGTTTGGGAAAACT
CGCTTTCTTTTGCCTGGGCATCCAGTGGCTGGCTTTCATTCCCGCCTTCA
AATGGAAGACGGAGTTTTTCTACGACTTGACCGGTTCCCTGACTTTCCTT
GCCACCATATTTTTGAGTCTGTATGCCGGCGCATGGCCTCCACACCCCCG
CCAACAGATGGCCTCGCTCCTTATTATGGTGTGGGCGTTTCGATTGGGTT
ATTTTTTGTTTACCCGCATCATACAGCATGGCAAGGACTCGCGTTTTGAC
ACTGTGAAGCACGATGCGTTGTTGTTTCTTCAATATTGGAGTGTGCAGGG
ATTGTGGGTATTCTTGACATGCTTGCCTGTTTTAATCTGTGCGACGAAGA
AAGGGGAGGGAGTGCGTAACCCAGCGTGGCCTATTCCAAGCGATTTAGTG
GGGATGCTTGTGTTTTTGGTAGGCATGGGCGTGGAGATGGGGGCGGATTT
TCAGAAGTACCAATGGCAGAACGACTGGCAGCACCGCGACGAATTCATCA
ATACGGGCCTGTGGTCTTGGTCGAGGCATCCGAATTACGCGGGGGAAATG
ACGTTGCACCTTGGAGTGTTCCTGTTGGCTTCTGGATCGTACACCCGACC
GTTGGAATGGGTGTGCGCGGCCATGGGGCCCACGTTCATTGTTTTGTTAT
TGTACAAGGTTAGCCTGCCCATGCTGGAGAAAAGGGCAAATGCCAGGTGG
AAGGATAATAAGATGTATAAGGTGTATATGCAGCGGACACCGGCGATTCT
CCCAGGGGTGCCCGAGTGGTTCTAAGACGAGGGAGGGGAGGAGGGAGGAG
GGAGGGGGGAAAACGGACCAGGATTCAAAGGAGAGGGAGGAGGGAAAGGG
GATCGGGAAGGAGGCATTTAATTTAAAGACTCATACTTCGAAGATCAAAA
TTAGCGCGAGGCAAAAAGGAAAAGAAGCAGGGGGGTTAAAGAAGTGCAGC
TGCAGCTGCTGCTGCTTTTATAA
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Coding sequence (CDS) from alignment at chr9:524367..525739-

>NO09G01680.1 ID=NO09G01680.1|Name=NO09G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at chr9:524367..525739- (Nannochloropsis oceanica)
ATGTTCAAGCTTGTTTCCATCCTCGGCGTGGCCGGCTTCATGCAAGCCGT
CGCCTTGCCGTTCGGTTTGGGAAAACTCGCTTTCTTTTGCCTGGGCATCC
AGTGGCTGGCTTTCATTCCCGCCTTCAAATGGAAGACGGAGTTTTTCTAC
GACTTGACCGGTTCCCTGACTTTCCTTGCCACCATATTTTTGAGTCTGTA
TGCCGGCGCATGGCCTCCACACCCCCGCCAACAGATGGCCTCGCTCCTTA
TTATGGTGTGGGCGTTTCGATTGGGTTATTTTTTGTTTACCCGCATCATA
CAGCATGGCAAGGACTCGCGTTTTGACACTGTGAAGCACGATGCGTTGTT
GTTTCTTCAATATTGGAGTGTGCAGGGATTGTGGGTATTCTTGACATGCT
TGCCTGTTTTAATCTGTGCGACGAAGAAAGGGGAGGGAGTGCGTAACCCA
GCGTGGCCTATTCCAAGCGATTTAGTGGGGATGCTTGTGTTTTTGGTAGG
CATGGGCGTGGAGATGGGGGCGGATTTTCAGAAGTACCAATGGCAGAACG
ACTGGCAGCACCGCGACGAATTCATCAATACGGGCCTGTGGTCTTGGTCG
AGGCATCCGAATTACGCGGGGGAAATGACGTTGCACCTTGGAGTGTTCCT
GTTGGCTTCTGGATCGTACACCCGACCGTTGGAATGGGTGTGCGCGGCCA
TGGGGCCCACGTTCATTGTTTTGTTATTGTACAAGGTTAGCCTGCCCATG
CTGGAGAAAAGGGCAAATGCCAGGTGGAAGGATAATAAGATGTATAAGGT
GTATATGCAGCGGACACCGGCGATTCTCCCAGGGGTGCCCGAGTGGTTCT
AA
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Synonyms
Publications