NO09G01670.1, NO09G01670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01670.1
Unique NameNO09G01670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1062
Alignment locationchr9:520875..521936 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:520875..521936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G01670.1 vs.
Match: EWM27595.1 (isopentenyl-diphosphate delta-isomerase [Nannochloropsis gaditana])

HSP 1 Score: 392.9 bits (1008), Expect = 1.100e-105
Identity = 200/290 (68.97%), Postives = 223/290 (76.90%), Query Frame = 0
Query:   65 RGSASSSSSRAATTSATAFDPEQARLFEEERIIAVTFDDKPIKAISKRNGHRNQKGPPLHRAFSVFLFDTLGRLLLQKRAAAKITFPSTWTNTCCSHPLWTQAELGDDVQPNDPVLGCKRAAIRKLEQELGIPSSSLAPSDFTYMNRIHYISDSNPEWGEHEIDYIFLVRKDVELNPNLNEVSETRYVDPRELRGMIRRAEINRGVSREYLLAEEAA-AGTQRVGGRGEGKVGEKRTEEEEV-GPVQFTPWCRAIMEKWLFVWWSDVGEDAKALEKHRDVKRIFRIGRVD 353
            R  ++   +R A TS +AFDPEQARLFEEE+I+AVTFDDKP+K ISKR GH N+KGPPLHRAFSVFLFDT  RLLLQKRA  KITFP+ WTNTCCSHPLW++ ELGDD Q  DPVLGCKRAAIRKLE ELGIP SSL   DF YM+RIHYISDS  EWGEHEIDYI L RKDV L PN NEVSETRYV   EL+ M+RRAE++RG S E +LAE+AA  G Q VGGR          E+E+V G + FTPW RAIME+WL+ WW DVG D   LEKHRD  RI RIGRVD
Sbjct:   53 RAISTQGVTRCAATSRSAFDPEQARLFEEEQIVAVTFDDKPLKPISKRAGHENRKGPPLHRAFSVFLFDTQNRLLLQKRAPTKITFPNAWTNTCCSHPLWSEHELGDDRQ--DPVLGCKRAAIRKLEHELGIPISSLRHEDFIYMSRIHYISDSGAEWGEHEIDYILLARKDVVLTPNENEVSETRYVAAPELKAMMRRAELHRGESPEVILAEDAALGGAQGVGGRD--------PEQEDVRGHIYFTPWSRAIMERWLYTWWPDVGADMGKLEKHRDTARIHRIGRVD 332          
The following BLAST results are available for this feature:
BLAST of NO09G01670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27595.11.100e-10568.97isopentenyl-diphosphate delta-isomerase [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01670NO09G01670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01670.1NO09G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01670.1.cds1NO09G01670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01670.1 ID=NO09G01670.1|Name=NO09G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp
ATGGCCCTGATTTTGCTCCTCGCCCGCACGTCCGAGGCCTTAATCTCAAC
TGCAACACGCAGCGCCCCATGCATACATGCCTTTGTGTTGCCAAGACGCA
CAACCAGTGTACGCTGCATTAGTATCAGCGACACCATCGAAAGATCAACA
GATGTGAGGCTGTTTTCCACCACCAATTTCTTGCAAAGACCCAGGGGCAG
TGCGAGCAGCAGCAGCAGCAGAGCCGCTACCACCTCAGCCACAGCATTCG
ATCCCGAACAAGCCCGGTTGTTCGAAGAGGAGCGCATCATCGCCGTAACC
TTTGATGATAAGCCAATCAAAGCCATCTCCAAGCGCAATGGCCACCGCAA
TCAGAAAGGTCCTCCTTTGCATCGAGCCTTCTCCGTCTTTCTCTTTGACA
CGCTAGGCCGCCTGCTGCTCCAAAAACGAGCAGCCGCCAAGATAACTTTC
CCCAGCACGTGGACTAACACTTGCTGTTCTCACCCTCTGTGGACCCAAGC
AGAACTTGGCGACGATGTCCAACCAAATGATCCCGTATTAGGGTGCAAAC
GTGCGGCCATTCGGAAGCTTGAGCAGGAGCTTGGTATCCCTTCTTCCTCC
CTTGCGCCCTCCGACTTCACCTATATGAACCGCATTCACTACATAAGTGA
CTCGAACCCTGAGTGGGGCGAACATGAGATAGACTATATTTTTTTGGTTC
GAAAAGACGTCGAATTGAATCCTAACTTGAATGAAGTAAGCGAGACGCGG
TACGTGGACCCACGCGAGCTTAGGGGAATGATCCGGCGGGCCGAGATTAA
CAGAGGGGTGAGCCGCGAATATCTTTTGGCAGAGGAAGCGGCAGCAGGCA
CGCAAAGAGTGGGCGGAAGAGGAGAAGGGAAGGTGGGAGAGAAGAGGACG
GAGGAGGAGGAAGTAGGACCTGTTCAGTTCACTCCGTGGTGTCGCGCAAT
TATGGAGAAGTGGTTGTTCGTGTGGTGGTCGGACGTTGGGGAGGACGCGA
AGGCCTTGGAAAAACACCGAGATGTGAAAAGGATTTTCAGGATTGGGCGT
GTGGACCCGTAG
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protein sequence of NO09G01670.1

>NO09G01670.1-protein ID=NO09G01670.1-protein|Name=NO09G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MALILLLARTSEALISTATRSAPCIHAFVLPRRTTSVRCISISDTIERST
DVRLFSTTNFLQRPRGSASSSSSRAATTSATAFDPEQARLFEEERIIAVT
FDDKPIKAISKRNGHRNQKGPPLHRAFSVFLFDTLGRLLLQKRAAAKITF
PSTWTNTCCSHPLWTQAELGDDVQPNDPVLGCKRAAIRKLEQELGIPSSS
LAPSDFTYMNRIHYISDSNPEWGEHEIDYIFLVRKDVELNPNLNEVSETR
YVDPRELRGMIRRAEINRGVSREYLLAEEAAAGTQRVGGRGEGKVGEKRT
EEEEVGPVQFTPWCRAIMEKWLFVWWSDVGEDAKALEKHRDVKRIFRIGR
VDP*
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mRNA from alignment at chr9:520875..521936-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01670.1 ID=NO09G01670.1|Name=NO09G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp|location=Sequence derived from alignment at chr9:520875..521936- (Nannochloropsis oceanica)
ATGGCCCTGATTTTGCTCCTCGCCCGCACGTCCGAGGCCTTAATCTCAAC TGCAACACGCAGCGCCCCATGCATACATGCCTTTGTGTTGCCAAGACGCA CAACCAGTGTACGCTGCATTAGTATCAGCGACACCATCGAAAGATCAACA GATGTGAGGCTGTTTTCCACCACCAATTTCTTGCAAAGACCCAGGGGCAG TGCGAGCAGCAGCAGCAGCAGAGCCGCTACCACCTCAGCCACAGCATTCG ATCCCGAACAAGCCCGGTTGTTCGAAGAGGAGCGCATCATCGCCGTAACC TTTGATGATAAGCCAATCAAAGCCATCTCCAAGCGCAATGGCCACCGCAA TCAGAAAGGTCCTCCTTTGCATCGAGCCTTCTCCGTCTTTCTCTTTGACA CGCTAGGCCGCCTGCTGCTCCAAAAACGAGCAGCCGCCAAGATAACTTTC CCCAGCACGTGGACTAACACTTGCTGTTCTCACCCTCTGTGGACCCAAGC AGAACTTGGCGACGATGTCCAACCAAATGATCCCGTATTAGGGTGCAAAC GTGCGGCCATTCGGAAGCTTGAGCAGGAGCTTGGTATCCCTTCTTCCTCC CTTGCGCCCTCCGACTTCACCTATATGAACCGCATTCACTACATAAGTGA CTCGAACCCTGAGTGGGGCGAACATGAGATAGACTATATTTTTTTGGTTC GAAAAGACGTCGAATTGAATCCTAACTTGAATGAAGTAAGCGAGACGCGG TACGTGGACCCACGCGAGCTTAGGGGAATGATCCGGCGGGCCGAGATTAA CAGAGGGGTGAGCCGCGAATATCTTTTGGCAGAGGAAGCGGCAGCAGGCA CGCAAAGAGTGGGCGGAAGAGGAGAAGGGAAGGTGGGAGAGAAGAGGACG GAGGAGGAGGAAGTAGGACCTGTTCAGTTCACTCCGTGGTGTCGCGCAAT TATGGAGAAGTGGTTGTTCGTGTGGTGGTCGGACGTTGGGGAGGACGCGA AGGCCTTGGAAAAACACCGAGATGTGAAAAGGATTTTCAGGATTGGGCGT GTGGACCCGTAG
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Coding sequence (CDS) from alignment at chr9:520875..521936-

>NO09G01670.1 ID=NO09G01670.1|Name=NO09G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr9:520875..521936- (Nannochloropsis oceanica)
ATGGCCCTGATTTTGCTCCTCGCCCGCACGTCCGAGGCCTTAATCTCAAC
TGCAACACGCAGCGCCCCATGCATACATGCCTTTGTGTTGCCAAGACGCA
CAACCAGTGTACGCTGCATTAGTATCAGCGACACCATCGAAAGATCAACA
GATGTGAGGCTGTTTTCCACCACCAATTTCTTGCAAAGACCCAGGGGCAG
TGCGAGCAGCAGCAGCAGCAGAGCCGCTACCACCTCAGCCACAGCATTCG
ATCCCGAACAAGCCCGGTTGTTCGAAGAGGAGCGCATCATCGCCGTAACC
TTTGATGATAAGCCAATCAAAGCCATCTCCAAGCGCAATGGCCACCGCAA
TCAGAAAGGTCCTCCTTTGCATCGAGCCTTCTCCGTCTTTCTCTTTGACA
CGCTAGGCCGCCTGCTGCTCCAAAAACGAGCAGCCGCCAAGATAACTTTC
CCCAGCACGTGGACTAACACTTGCTGTTCTCACCCTCTGTGGACCCAAGC
AGAACTTGGCGACGATGTCCAACCAAATGATCCCGTATTAGGGTGCAAAC
GTGCGGCCATTCGGAAGCTTGAGCAGGAGCTTGGTATCCCTTCTTCCTCC
CTTGCGCCCTCCGACTTCACCTATATGAACCGCATTCACTACATAAGTGA
CTCGAACCCTGAGTGGGGCGAACATGAGATAGACTATATTTTTTTGGTTC
GAAAAGACGTCGAATTGAATCCTAACTTGAATGAAGTAAGCGAGACGCGG
TACGTGGACCCACGCGAGCTTAGGGGAATGATCCGGCGGGCCGAGATTAA
CAGAGGGGTGAGCCGCGAATATCTTTTGGCAGAGGAAGCGGCAGCAGGCA
CGCAAAGAGTGGGCGGAAGAGGAGAAGGGAAGGTGGGAGAGAAGAGGACG
GAGGAGGAGGAAGTAGGACCTGTTCAGTTCACTCCGTGGTGTCGCGCAAT
TATGGAGAAGTGGTTGTTCGTGTGGTGGTCGGACGTTGGGGAGGACGCGA
AGGCCTTGGAAAAACACCGAGATGTGAAAAGGATTTTCAGGATTGGGCGT
GTGGACCCGTAG
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Synonyms
Publications