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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr9 | genome | chr9:520419..524348 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G01660.1 vs.
Match: EWM27544.1 (dnaj subfamily b member 4 [Nannochloropsis gaditana]) HSP 1 Score: 455.7 bits (1171), Expect = 1.300e-124 Identity = 242/334 (72.46%), Postives = 267/334 (79.94%), Query Frame = 0
Query: 1 MSAGDDGLVSFFFYILFVYPTTSWILKPGRFPKKTGLMYAIGFLAILALGKTYLEFQERGPNYYNELNINRASSPLEIKKAYKKMSLELHPDKNKSPNAADMFARVKDAYDTLMDPELREVYNKFGPEGIKHNRRFDETQLLLEIAVYYATWGMLAFVLTLGKASSSARNWIFTGQIVMLIAEISLMLQETKLPGWLLPAWTEHEFVFLMHSLFPAFMNGCRCLGGFLYVDFDEQARQKMEHLDAQNKDILLVLRDIQVNIQSIATRRAAALANPSSSSSSSSSTIVPTIPPSSSSSTTTNNSNNNYNDNNYNDRSAAAAAGSVAAAAGGQVAG 335
MS G+DGLVSFFFYILFVYP TSW LKPGRFP+K G+ YAI FLAILALGKTYLEFQ+RGPN+YNEL+I RAS+PLEIKKAYKKMSLELHPDKNKSP AA+ FARVK+AYDTLMDPELREVYNKFG EGIK NRRFDETQLLLEIAV+Y TWGMLAFVLTLGKASS+ARNWI+TGQI MLIAEISLMLQETKLP WLLP WTEHEFVFLM SLFPAFMNGCRCL GFLYVD DEQARQKMEHL+AQNKDIL+VLRDIQVN+QSI + N S SS+ + P ++ T +R ++ + V A A + G
Sbjct: 1 MSQGEDGLVSFFFYILFVYPLTSWFLKPGRFPRKRGITYAISFLAILALGKTYLEFQDRGPNHYNELHITRASTPLEIKKAYKKMSLELHPDKNKSPTAAEEFARVKEAYDTLMDPELREVYNKFGAEGIKQNRRFDETQLLLEIAVFYVTWGMLAFVLTLGKASSTARNWIYTGQIAMLIAEISLMLQETKLPSWLLPTWTEHEFVFLMRSLFPAFMNGCRCLCGFLYVDVDEQARQKMEHLEAQNKDILMVLRDIQVNMQSIQASGGSG-GNYRSLGGGSSAAGTLSGGPVIKATPTGKIKEMEERLRQQRERGSSRVSEPVKAGAAEKAGG 333
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G01660.1 ID=NO09G01660.1|Name=NO09G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=3597bp
TGAGTGTATGCACGTAACGTTCTTCTTTTTCTTGTTACTTATTCCTGTGA
GAAGGTATTTTGACTTGCTTCTGTTTCAACAACGTGGTAAGAACGGCTGA
AATGACATCTGCCCCTTCCATAACGTCCCTTTACATCCTTTTCCAATGAA
CACTAGCCTTCATTTTTCGAGTCATGTCTTACACTAGTCCACCATACTTA
CACCCATCAAGGAGCGCATCAAGACCTCTCTCCTCCCTTCTTCCTCCGCA
CTCTCCCGCACTTCTTCCTCATCACCGTCTTCTCCTTCATCTCCTTCGCT
TTATCTTGGTCTCCTTTTTCTTCTCCTGCTTCCTCCTCGTCTTCTCCCTC
CTTTACGGGTGCGCATCGGGAGACGTCGGACACCAGCACGACAGGTGGAC
AAGACGACCACCCGGCTCCCTCGTCACCCAACAAATCCCACTCTATTTCT
TGCTTGCTACGGGTCCACACGCCCAATCCTGAAAATCCTTTTCACATCTC
GGTGTTTTTCCAAGGCCTTCGCGTCCTCCCCAACGTCCGACCACCACACG
AACAACCACTTCTCCATAATTGCGCGACACCACGGAGTGAACTGAACAGG
TCCTACTTCCTCCTCCTCCGTCCTCTTCTCTCCCACCTTCCCTTCTCCTC
TTCCGCCCACTCTTTGCGTGCCTGCTGCCGCTTCCTCTGCCAAAAGATAT
TCGCGGCTCACCCCTCTGTTAATCTCGGCCCGCCGGATCATTCCCCTAAG
CTCGCGTGGGTCCACGTACCGCGTCTCGCTTACTTCATTCAAGTTAGGAT
TCAATTCGACGTCTTTTCGAACCAAAAAAATATAGTCTATCTCATGTTCG
CCCCACTCAGGGTTCGAGTCACTTATGTAGTGAATGCGGTTCATATAGGT
GAAGTCGGAGGGCGCAAGGGAGGAAGAAGGGATACCAAGCTCCTGCTCAA
GCTTCCGAATGGCCGCACGTTTGCACCCTAATACGGGATCATTTGGTTGG
ACATCGTCGCCAAGTTCTGCTTGGGTCCACAGAGGGTGAGAACAGCAAGT
GTTAGTCCACGTGCTGGGGAAAGTTATCTTGGCGGCTGCTCGTTTTTGGA
GCAGCAGGCGGCCTAGCGTGTCAAAGAGAAAGACGGAGAAGGCTCGATGC
AAAGGAGGACCTTTCTGATTGCGGTGGCCATTGCGCTTGGAGATGGCTTT
GATTGGCTTATCATCAAAGGTTACGGCGATGATGCGCTCCTCTTCGAACA
ACCGGGCTTGTTCGGGATCGAATGCTGTGGCTGAGGTGGTAGCGGCTCTG
CTGCTGCTGCTGCTCGCACTGCCCCTGGGTCTTTGCAAGAAATTGGTGGT
GGAAAACAGCCTCACATCTGTTGATCTTTCGATGGTGTCGCTGATACTAA
TGCAGCGTACACTGGTTGTGCGTCTTGGCAACACAAAGGCATGTATGCAT
GGGGCGCTGCGTGTTGCAGTTGAGATTAAGGCCTCGGACGTGCGGGCGAG
GAGCAAAATCAGGGCCATGGCGAAGCTGGTAAGGATGTAGATTACAGATG
TGATCCGAGCACAAGGGTGGTCGGTCATTCAAGGATTGTGACGCGTCAAA
TACTGCATCATGCAATCGGCTCTAGGAGACAAACGTCATATTAGTCTCTA
AGACGACTCTTCTTGATAGCTAAGGTTAGCACTCGATCACAGTTCGCAGC
AGGGGCTAGAGTGTGGCGTGATCTTCCTGTACAGCGTGTGCCAAAAGGAG
TGCGTGTTGTCAGACTACGAGATGCCTTGACACGTAAGACGATGTTTTGC
TTCAAAGGCTCGCCGTTGTTGTGTGCAGCGATGAGGGTTTGTCATCATGA
CTTTCGAGTGGATGAGACTCGTTGTGACGCCCTCTTCGTATGATAGCTGT
CCTGACTACGCGCTTATTATGTGTCCGTCGTGCTTGCCCTTGTCTGACAT
ACCCATTCTTCTTTTCCTGCGCCTACCCCTCCACAGGTTTTCAATAGCAG
TAAGGAGGGCCAGCAACGGGCAGCTGCAACAGTAGCGGCAGCCGCACGTG
ACTAGACGCGCAAGGACTTGGACACCACGTGCCTTGTCTTCGAGCATCAC
TGGTACGCACCTCTGGTTGACCCCCCTTTAGGTAGTTTCTCCTACTTGGC
GCCCACGCCGTGCTCCCTCAGTCGTCACCATGTCCGCAGGAGACGATGGA
CTCGTCTCCTTCTTCTTCTACATCCTCTTCGTCTACCCCACCACCTCCTG
GATCCTCAAACCTGGCCGCTTCCCGAAGAAAACTGGTCTGATGTATGCCA
TAGGCTTCCTGGCCATTCTGGCTCTTGGGAAGACCTACCTCGAGTTCCAA
GAACGCGGGCCTAACTATTACAACGAGCTAAACATCAACCGTGCCTCCAG
TCCGTTGGAAATCAAAAAGGCCTATAAGAAGATGTCCTTGGAATTACACC
CCGACAAGAACAAGAGCCCAAACGCCGCCGATATGTTTGCGCGGGTCAAG
GATGCGTATGACACTTTAATGGACCCTGAATTGAGGGAGGTTTATAATAA
ATTTGGTCCAGAGGGGATCAAGCATAACCGACGCTTCGACGAGACGCAGT
TACTCTTGGAGATCGCGGTGTACTACGCGACCTGGGGTATGTTGGCTTTC
GTGTTGACGCTGGGGAAGGCGAGTAGCAGTGCGCGGAACTGGATCTTCAC
CGGTCAGATCGTCATGTTGATTGCGGAGATATCGTTGATGCTGCAAGAAA
CGAAGCTCCCGGGATGGTTGTTGCCGGCTTGGACGGAGCATGAGTTTGTC
TTCTTGATGCATTCTTTGTTCCCGGCTTTCATGAATGGATGTCGGTGTCT
GGGTGGGTTTCTGTACGTTGATTTTGACGAGCAGGCAAGGCAGAAAATGG
AGCATTTGGATGCGCAAAACAAGGACATATTGTTGGTGTTGAGAGACATC
CAGGTTAACATTCAGTCGATTGCGACACGCCGCGCCGCTGCCTTGGCTAA
CCCCTCTTCCTCCTCCTCTTCCTCTTCCTCCACCATTGTACCCACCATCC
CGCCCTCTTCCTCTTCATCCACCACCACCAACAACTCCAACAACAACTAC
AACGACAACAACTACAACGACAGGTCAGCGGCGGCAGCAGCGGGCTCGGT
GGCAGCAGCAGCAGGGGGGCAGGTGGCGGGGGCTCGTCGGCGGCGGGTAC
GCTAAGCGGTGCTCCCGTGGTAAAGGCCACGCCAACGGGCAAAATCAAAG
AAATGGAAGAAAGGCTGCGCCAGCAACGGGAGCGGTTGGGAGCAGGCGCG
GGTAGGGTCTCGGAACCGGTGAAACCAGCGGCGGTAGCAGGGAGTGGCAT
GGGCATGTGGTGGGCCATCATTATGTATGTGGTTTTCCACTTTGTCTTCA
ACAACAGTAGCTCATGAGGGTAGGGAGGGAAGGAGGGGAGGAAGGGGAGG
GATGGGATGCTGTGTAGCACTGACGCAAAGTTCACTTGAAGGAAAGGAAG
GCGAAATAAGGAAAACAAAAGAAACGAAAAGACGACAAAGGCTGATGGAA
AGACCATTCATTGTCCTCAGCCCGCGAAAACGAGACAACTGCAACTG back to topprotein sequence of NO09G01660.1 >NO09G01660.1-protein ID=NO09G01660.1-protein|Name=NO09G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MSAGDDGLVSFFFYILFVYPTTSWILKPGRFPKKTGLMYAIGFLAILALG
KTYLEFQERGPNYYNELNINRASSPLEIKKAYKKMSLELHPDKNKSPNAA
DMFARVKDAYDTLMDPELREVYNKFGPEGIKHNRRFDETQLLLEIAVYYA
TWGMLAFVLTLGKASSSARNWIFTGQIVMLIAEISLMLQETKLPGWLLPA
WTEHEFVFLMHSLFPAFMNGCRCLGGFLYVDFDEQARQKMEHLDAQNKDI
LLVLRDIQVNIQSIATRRAAALANPSSSSSSSSSTIVPTIPPSSSSSTTT
NNSNNNYNDNNYNDRSAAAAAGSVAAAAGGQVAGARRRRVR* back to topmRNA from alignment at chr9:520419..524348+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G01660.1 ID=NO09G01660.1|Name=NO09G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=3930bp|location=Sequence derived from alignment at chr9:520419..524348+ (Nannochloropsis oceanica)
TGAGTGTATGCACGTAACGTTCTTCTTTTTCTTGTTACTTATTCCTGTGA
GAAGGTATTTTGACTTGCTTCTGTTTCAACAACGTGGTAAGAACGGCTGA
AATGACATCTGCCCCTTCCATAACGTCCCTTTACATCCTTTTCCAATGAA
CACTAGCCTTCATTTTTCGAGTCATGTCTTACACTAGTCCACCATACTTA
CACCCATCAAGGAGCGCATCAAGACCTCTCTCCTCCCTTCTTCCTCCGCA
CTCTCCCGCACTTCTTCCTCATCACCGTCTTCTCCTTCATCTCCTTCGCT
TTATCTTGGTCTCCTTTTTCTTCTCCTGCTTCCTCCTCGTCTTCTCCCTC
CTTTACGGGTGCGCATCGGGAGACGTCGGACACCAGCACGACAGGTGGAC
AAGACGACCACCCGGCTCCCTCGTCACCCAACAAATCCCACTCTATTTCT
TGCTTGCTACGGGTCCACACGCCCAATCCTGAAAATCCTTTTCACATCTC
GGTGTTTTTCCAAGGCCTTCGCGTCCTCCCCAACGTCCGACCACCACACG
AACAACCACTTCTCCATAATTGCGCGACACCACGGAGTGAACTGAACAGG
TCCTACTTCCTCCTCCTCCGTCCTCTTCTCTCCCACCTTCCCTTCTCCTC
TTCCGCCCACTCTTTGCGTGCCTGCTGCCGCTTCCTCTGCCAAAAGATAT
TCGCGGCTCACCCCTCTGTTAATCTCGGCCCGCCGGATCATTCCCCTAAG
CTCGCGTGGGTCCACGTACCGCGTCTCGCTTACTTCATTCAAGTTAGGAT
TCAATTCGACGTCTTTTCGAACCAAAAAAATATAGTCTATCTCATGTTCG
CCCCACTCAGGGTTCGAGTCACTTATGTAGTGAATGCGGTTCATATAGGT
GAAGTCGGAGGGCGCAAGGGAGGAAGAAGGGATACCAAGCTCCTGCTCAA
GCTTCCGAATGGCCGCACGTTTGCACCCTAATACGGGATCATTTGGTTGG
ACATCGTCGCCAAGTTCTGCTTGGGTCCACAGAGGGTGAGAACAGCAAGT
GTTAGTCCACGTGCTGGGGAAAGTTATCTTGGCGGCTGCTCGTTTTTGGA
GCAGCAGGCGGCCTAGCGTGTCAAAGAGAAAGACGGAGAAGGCTCGATGC
AAAGGAGGACCTTTCTGATTGCGGTGGCCATTGCGCTTGGAGATGGCTTT
GATTGGCTTATCATCAAAGGTTACGGCGATGATGCGCTCCTCTTCGAACA
ACCGGGCTTGTTCGGGATCGAATGCTGTGGCTGAGGTGGTAGCGGCTCTG
CTGCTGCTGCTGCTCGCACTGCCCCTGGGTCTTTGCAAGAAATTGGTGGT
GGAAAACAGCCTCACATCTGTTGATCTTTCGATGGTGTCGCTGATACTAA
TGCAGCGTACACTGGTTGTGCGTCTTGGCAACACAAAGGCATGTATGCAT
GGGGCGCTGCGTGTTGCAGTTGAGATTAAGGCCTCGGACGTGCGGGCGAG
GAGCAAAATCAGGGCCATGGCGAAGCTGGTAAGGATGTAGATTACAGATG
TGATCCGAGCACAAGGGTGGTCGGTCATTCAAGGATTGTGACGCGTCAAA
TACTGCATCATGCAATCGGCTCTAGGAGACAAACGTCATATTAGTCTCTA
AGACGACTCTTCTTGATAGCTAAGGTTAGCACTCGATCACAGTTCGCAGC
AGGGGCTAGAGTGTGGCGTGATCTTCCTGTACAGCGTGTGCCAAAAGGAG
TGCGTGTTGTCAGACTACGAGATGCCTTGACACGTAAGACGATGTTTTGC
TTCAAAGGCTCGCCGTTGTTGTGTGCAGCGATGAGGGTTTGTCATCATGA
CTTTCGAGTGGATGAGACTCGTTGTGACGCCCTCTTCGTATGATAGCTGT
CCTGACTACGCGCTTATTATGTGTCCGTCGTGCTTGCCCTTGTCTGACAT
ACCCATTCTTCTTTTCCTGCGCCTACCCCTCCACAGGTTTTCAATAGCAG
TAAGGAGGGCCAGCAACGGGCAGCTGCAACAGTAGCGGCAGCCGCACGTG
ACTAGACGCGCAAGGACTTGGACACCACGTGCCTTGTCTTCGAGCATCAC
TGGTACGCACCTCTGGTTGACCCCCCTTTAGGTAGTTTCTCCTACTTGGC
GCCCACGCCGTGCTCCCTCAGTCGTCACCATGTCCGCAGGAGACGATGGA
CTCGTCTCCTTCTTCTTCTACATCCTCTTCGTCTACCCCACCACCTCCTG
GATCCTCAAACCTGGCCGCTTCCCGAAGAAAACTGGTCTGATGTATGCCA
TAGGCTTCCTGGCCATTCTGGCTCTTGGGAAGACCTACCTCGAGTTCCAA
GAACGCGGGCCTAACTATTACAACGAGCTAAACATCAACCGTGCCTCCAG
TCCGTTGGAAATCAAAAAGGCCTATAAGAAGATGTCCTTGGAATTACACC
CCGACAAGAACAAGAGCCCAAACGCCGCCGATATGTTTGCGCGGGTCAAG
GATGCGTATGACACTTTAATGGACCCTGAATTGAGGGAGGTTTATAATAA
ATTTGGTCCAGAGGGGATCAAGCATAACCGACGCTTCGACGAGACGCAGT
TACTCTTGGAGATCGCGGTGTACTACGCGACCTGGGGTATGTTGGCTTTC
GTGTTGACGCTGGGGAAGGCGAGTAGCAGTGCGCGGAACTGGATCTTCAC
CGGTCAGATCGTCATGTTGATTGCGGAGATATCGTTGATGCTGCAAGAAA
CGAAGCTCCCGGGATGGTTGTTGCCGGCTTGGACGGAGCATGAGTTTGTC
TTCTTGATGCATTCTTTGTTCCCGGCTTTCATGAATGGATGTCGGTGTCT
GGGTGGGTTTCTGTACGTTGATTTTGACGAGCAGGCAAGGCAGAAAATGG
AGCATTTGGATGCGCAAAACAAGGACATATTGTTGGTGTTGAGAGACATC
CAGGTTAACATTCAGTCGATTGCGGTACGTACGGCCAGAACGAACATGTG
TCTTCGTCTATGATGTGTTTTGGTCTTTATTTGTGTGATGTGTTTGTGTT
GGGTGGAAGTCGCAGAGAGCATGCGGTGTGTCGTGAACACACGCAGTCAA
TCGCGGTACGTTCGGGCAGGAGACGAGAGGATTAATCCTCTTAGCGTATC
GTGTGTTTGGATGTTGTTATGTTGCTTGTCGTTTCCTCCTTTCTCCCCTC
TGTGTGTATGTGATGAGTCTGTGTGCATGAGGAGCGGTGCGAGAGCGTTT
TCTTTATTCGACCCCCCCTCCTTCTCCCCCCCCTCTTTGGTAATCTATAT
ACAATAGACACGCCGCGCCGCTGCCTTGGCTAACCCCTCTTCCTCCTCCT
CTTCCTCTTCCTCCACCATTGTACCCACCATCCCGCCCTCTTCCTCTTCA
TCCACCACCACCAACAACTCCAACAACAACTACAACGACAACAACTACAA
CGACAGGTCAGCGGCGGCAGCAGCGGGCTCGGTGGCAGCAGCAGCAGGGG
GGCAGGTGGCGGGGGCTCGTCGGCGGCGGGTACGCTAAGCGGTGCTCCCG
TGGTAAAGGCCACGCCAACGGGCAAAATCAAAGAAATGGAAGAAAGGCTG
CGCCAGCAACGGGAGCGGTTGGGAGCAGGCGCGGGTAGGGTCTCGGAACC
GGTGAAACCAGCGGCGGTAGCAGGGAGTGGCATGGGCATGTGGTGGGCCA
TCATTATGTATGTGGTTTTCCACTTTGTCTTCAACAACAGTAGCTCATGA
GGGTAGGGAGGGAAGGAGGGGAGGAAGGGGAGGGATGGGATGCTGTGTAG
CACTGACGCAAAGTTCACTTGAAGGAAAGGAAGGCGAAATAAGGAAAACA
AAAGAAACGAAAAGACGACAAAGGCTGATGGAAAGACCATTCATTGTCCT
CAGCCCGCGAAAACGAGACAACTGCAACTG back to topCoding sequence (CDS) from alignment at chr9:520419..524348+ >NO09G01660.1 ID=NO09G01660.1|Name=NO09G01660.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr9:520419..524348+ (Nannochloropsis oceanica)
ATGTCCGCAGGAGACGATGGACTCGTCTCCTTCTTCTTCTACATCCTCTT
CGTCTACCCCACCACCTCCTGGATCCTCAAACCTGGCCGCTTCCCGAAGA
AAACTGGTCTGATGTATGCCATAGGCTTCCTGGCCATTCTGGCTCTTGGG
AAGACCTACCTCGAGTTCCAAGAACGCGGGCCTAACTATTACAACGAGCT
AAACATCAACCGTGCCTCCAGTCCGTTGGAAATCAAAAAGGCCTATAAGA
AGATGTCCTTGGAATTACACCCCGACAAGAACAAGAGCCCAAACGCCGCC
GATATGTTTGCGCGGGTCAAGGATGCGTATGACACTTTAATGGACCCTGA
ATTGAGGGAGGTTTATAATAAATTTGGTCCAGAGGGGATCAAGCATAACC
GACGCTTCGACGAGACGCAGTTACTCTTGGAGATCGCGGTGTACTACGCG
ACCTGGGGTATGTTGGCTTTCGTGTTGACGCTGGGGAAGGCGAGTAGCAG
TGCGCGGAACTGGATCTTCACCGGTCAGATCGTCATGTTGATTGCGGAGA
TATCGTTGATGCTGCAAGAAACGAAGCTCCCGGGATGGTTGTTGCCGGCT
TGGACGGAGCATGAGTTTGTCTTCTTGATGCATTCTTTGTTCCCGGCTTT
CATGAATGGATGTCGGTGTCTGGGTGGGTTTCTGTACGTTGATTTTGACG
AGCAGGCAAGGCAGAAAATGGAGCATTTGGATGCGCAAAACAAGGACATA
TTGTTGGTGTTGAGAGACATCCAGGTTAACATTCAGTCGATTGCGACACG
CCGCGCCGCTGCCTTGGCTAACCCCTCTTCCTCCTCCTCTTCCTCTTCCT
CCACCATTGTACCCACCATCCCGCCCTCTTCCTCTTCATCCACCACCACC
AACAACTCCAACAACAACTACAACGACAACAACTACAACGACAGGTCAGC
GGCGGCAGCAGCGGGCTCGGTGGCAGCAGCAGCAGGGGGGCAGGTGGCGG
GGGCTCGTCGGCGGCGGGTACGCTAA back to top
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