NO09G01650.1, NO09G01650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01650.1
Unique NameNO09G01650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length933
Alignment locationchr9:519426..520358 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:519426..520358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01650.1 vs.
Match: EWM27592.1 (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 235.0 bits (598), Expect = 3.200e-58
Identity = 134/290 (46.21%), Postives = 182/290 (62.76%), Query Frame = 0 
Query:    1 MGNKASAQLLPSLDDMLKTFSPAEVQALEARFPTAPLSSPRHQQQSTNNGSSGSDRKRNGRKQSFPDSTLALVTEAQFVALLGEGYGPSVKRLLLRLFAVLDTNGTSALEYQEHVGTVYFFNHATATERARVLFYMYEPTSSSSSPSPFATAVSKAHLSREQMTTLCAEITLAVIEMQAIPSLVFGTSRDGKYGRREAGSITSQPPSAAPAAAKAAAAAVSLTHTNATDPPFKDLIGVMVDVAFLRWDADKDGKLILPEFQGFVTQQIDNGVEELFGMLLNSPQVPRLLF 291
            MGNK S QLLP++D MLK F P E+ ALE RFP +P S+ RH Q +  N   G  RK++   Q+       L+T  +FVALLGEG+GP +KRLL RLF VLD NGT ALEYQEHVG +YFF HA+  ER RV+F+MYEP  SS+S S  A A SK +L ++ +  LC EI   + E++A P  V  +       +R+   ++      AP  A +        +  +   PFKD+IGVMVD+ FLRWDAD+DG+L L +F+ F ++  +NG+E++ G L+ SP V RL++
Sbjct:    1 MGNKGSTQLLPTVDTMLKAFGPEEMLALEDRFPVSPSSATRHHQVTHRNLYIG--RKKDNSSQASLRFAPVLITREEFVALLGEGFGPCMKRLLRRLFTVLDANGTGALEYQEHVGAMYFFKHASPVERFRVIFHMYEPKCSSASSSTTA-AASKVYLHKDHVMALCTEIFSTLSEVEAGPQRVMASF------QRDNDDVSW---DFAPPLASSEGVVPKPVYVQSQAAPFKDIIGVMVDMIFLRWDADRDGRLNLLDFEAFASRHPENGIEDVLGKLVTSPHVARLMY 278
The following BLAST results are available for this feature:
BLAST of NO09G01650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27592.13.200e-5846.21EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01650NO09G01650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01650.1NO09G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01650.1.cds1NO09G01650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01650.1 ID=NO09G01650.1|Name=NO09G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
ATGGGGAACAAAGCGTCGGCGCAGCTCCTACCGTCGCTGGATGACATGCT
CAAAACCTTTTCCCCTGCTGAGGTCCAAGCACTCGAGGCACGCTTTCCTA
CAGCTCCTTTGTCGTCGCCCCGCCATCAGCAGCAGTCAACAAACAACGGC
AGCAGCGGCAGCGACCGGAAACGAAACGGGAGGAAACAATCTTTTCCTGA
CTCCACGCTCGCGCTCGTGACCGAAGCACAATTTGTGGCTTTGCTTGGGG
AGGGGTATGGACCCAGCGTGAAGAGGTTGCTCCTCCGTCTCTTTGCCGTG
CTAGACACCAATGGCACAAGTGCTTTGGAATACCAGGAGCACGTGGGAAC
AGTTTACTTTTTCAATCATGCCACCGCGACAGAGCGGGCCCGTGTCTTGT
TTTACATGTACGAGCCGACATCCTCCTCCTCCTCTCCCTCTCCTTTTGCC
ACGGCAGTCAGCAAGGCTCACCTGAGCAGAGAACAAATGACGACACTGTG
TGCGGAAATCACATTGGCAGTGATCGAGATGCAAGCCATCCCATCGTTGG
TCTTCGGGACATCACGGGATGGTAAATATGGTAGGAGAGAAGCGGGTTCA
ATTACATCACAACCACCATCAGCAGCACCGGCGGCGGCAAAAGCAGCAGC
GGCAGCAGTCTCCCTCACCCACACAAATGCCACTGATCCGCCTTTCAAAG
ACTTGATAGGGGTTATGGTAGACGTGGCTTTTCTACGATGGGATGCGGAT
AAGGACGGCAAATTAATCTTGCCTGAGTTTCAGGGATTTGTAACACAGCA
GATCGATAACGGGGTGGAGGAATTGTTCGGGATGCTGCTCAACTCACCAC
AGGTCCCAAGGCTATTGTTTTATAGCGATGGAGAGGAAGGAAGAAGGCGA
GGAGGAGAGAGAGGAGTGGGCAATAGAAGATAG
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protein sequence of NO09G01650.1

>NO09G01650.1-protein ID=NO09G01650.1-protein|Name=NO09G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MGNKASAQLLPSLDDMLKTFSPAEVQALEARFPTAPLSSPRHQQQSTNNG
SSGSDRKRNGRKQSFPDSTLALVTEAQFVALLGEGYGPSVKRLLLRLFAV
LDTNGTSALEYQEHVGTVYFFNHATATERARVLFYMYEPTSSSSSPSPFA
TAVSKAHLSREQMTTLCAEITLAVIEMQAIPSLVFGTSRDGKYGRREAGS
ITSQPPSAAPAAAKAAAAAVSLTHTNATDPPFKDLIGVMVDVAFLRWDAD
KDGKLILPEFQGFVTQQIDNGVEELFGMLLNSPQVPRLLFYSDGEEGRRR
GGERGVGNRR*
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mRNA from alignment at chr9:519426..520358+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01650.1 ID=NO09G01650.1|Name=NO09G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp|location=Sequence derived from alignment at chr9:519426..520358+ (Nannochloropsis oceanica)
ATGGGGAACAAAGCGTCGGCGCAGCTCCTACCGTCGCTGGATGACATGCT
CAAAACCTTTTCCCCTGCTGAGGTCCAAGCACTCGAGGCACGCTTTCCTA
CAGCTCCTTTGTCGTCGCCCCGCCATCAGCAGCAGTCAACAAACAACGGC
AGCAGCGGCAGCGACCGGAAACGAAACGGGAGGAAACAATCTTTTCCTGA
CTCCACGCTCGCGCTCGTGACCGAAGCACAATTTGTGGCTTTGCTTGGGG
AGGGGTATGGACCCAGCGTGAAGAGGTTGCTCCTCCGTCTCTTTGCCGTG
CTAGACACCAATGGCACAAGTGCTTTGGAATACCAGGAGCACGTGGGAAC
AGTTTACTTTTTCAATCATGCCACCGCGACAGAGCGGGCCCGTGTCTTGT
TTTACATGTACGAGCCGACATCCTCCTCCTCCTCTCCCTCTCCTTTTGCC
ACGGCAGTCAGCAAGGCTCACCTGAGCAGAGAACAAATGACGACACTGTG
TGCGGAAATCACATTGGCAGTGATCGAGATGCAAGCCATCCCATCGTTGG
TCTTCGGGACATCACGGGATGGTAAATATGGTAGGAGAGAAGCGGGTTCA
ATTACATCACAACCACCATCAGCAGCACCGGCGGCGGCAAAAGCAGCAGC
GGCAGCAGTCTCCCTCACCCACACAAATGCCACTGATCCGCCTTTCAAAG
ACTTGATAGGGGTTATGGTAGACGTGGCTTTTCTACGATGGGATGCGGAT
AAGGACGGCAAATTAATCTTGCCTGAGTTTCAGGGATTTGTAACACAGCA
GATCGATAACGGGGTGGAGGAATTGTTCGGGATGCTGCTCAACTCACCAC
AGGTCCCAAGGCTATTGTTTTATAGCGATGGAGAGGAAGGAAGAAGGCGA
GGAGGAGAGAGAGGAGTGGGCAATAGAAGATAG
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Coding sequence (CDS) from alignment at chr9:519426..520358+

>NO09G01650.1 ID=NO09G01650.1|Name=NO09G01650.1|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at chr9:519426..520358+ (Nannochloropsis oceanica)
ATGGGGAACAAAGCGTCGGCGCAGCTCCTACCGTCGCTGGATGACATGCT
CAAAACCTTTTCCCCTGCTGAGGTCCAAGCACTCGAGGCACGCTTTCCTA
CAGCTCCTTTGTCGTCGCCCCGCCATCAGCAGCAGTCAACAAACAACGGC
AGCAGCGGCAGCGACCGGAAACGAAACGGGAGGAAACAATCTTTTCCTGA
CTCCACGCTCGCGCTCGTGACCGAAGCACAATTTGTGGCTTTGCTTGGGG
AGGGGTATGGACCCAGCGTGAAGAGGTTGCTCCTCCGTCTCTTTGCCGTG
CTAGACACCAATGGCACAAGTGCTTTGGAATACCAGGAGCACGTGGGAAC
AGTTTACTTTTTCAATCATGCCACCGCGACAGAGCGGGCCCGTGTCTTGT
TTTACATGTACGAGCCGACATCCTCCTCCTCCTCTCCCTCTCCTTTTGCC
ACGGCAGTCAGCAAGGCTCACCTGAGCAGAGAACAAATGACGACACTGTG
TGCGGAAATCACATTGGCAGTGATCGAGATGCAAGCCATCCCATCGTTGG
TCTTCGGGACATCACGGGATGGTAAATATGGTAGGAGAGAAGCGGGTTCA
ATTACATCACAACCACCATCAGCAGCACCGGCGGCGGCAAAAGCAGCAGC
GGCAGCAGTCTCCCTCACCCACACAAATGCCACTGATCCGCCTTTCAAAG
ACTTGATAGGGGTTATGGTAGACGTGGCTTTTCTACGATGGGATGCGGAT
AAGGACGGCAAATTAATCTTGCCTGAGTTTCAGGGATTTGTAACACAGCA
GATCGATAACGGGGTGGAGGAATTGTTCGGGATGCTGCTCAACTCACCAC
AGGTCCCAAGGCTATTGTTTTATAGCGATGGAGAGGAAGGAAGAAGGCGA
GGAGGAGAGAGAGGAGTGGGCAATAGAAGATAG
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Synonyms
Publications