NO09G01630.1, NO09G01630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01630.1
Unique NameNO09G01630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1278
Alignment locationchr9:514458..515735 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:514458..515735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G01630.1 vs.
Match: EWM27569.1 (intraflagellar transport protein 72 74 [Nannochloropsis gaditana])

HSP 1 Score: 82.8 bits (203), Expect = 2.800e-12
Identity = 56/159 (35.22%), Postives = 97/159 (61.01%), Query Frame = 0 
Query:    3 DASSLSIILRQRINEIAQEVLRLKEEHAALVRAKNKASAYQGRLETVLREVHTLEAIHADYNLALDKLRTSIDPAHLRLYLKRLKTQNTEAARGVREYVLRRQHLEHEADRLLEERTRRTETEEEEIKRFVDSKTFELYQELREQMEMLERAAQRQEEE 162
            + S L  +L++R++ +  EV+ L+++  + +RAK+    YQ RL T++ +V   E     YNLALDK+RTS DPA LR Y K+ + +N    + + E  L R+ LE +A  LL+E  R  E    ++++++D + F++++E R Q +ML +   +QEE+
Sbjct:   15 NVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARALLDEDRRMMEMLRGKVRQYLDLERFQVFEESRLQRDMLMKELWKQEEK 173
The following BLAST results are available for this feature:
BLAST of NO09G01630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27569.12.800e-1235.22intraflagellar transport protein 72 74 [Nannochlor... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01630NO09G01630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01630.1NO09G01630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01630.1.cds1NO09G01630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01630.1 ID=NO09G01630.1|Name=NO09G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp
ATGGCGGATGCCTCGTCCCTGTCCATCATTTTGAGACAGCGCATCAATGA
AATAGCTCAAGAAGTGCTGCGGCTAAAAGAGGAGCATGCGGCCCTCGTTC
GCGCCAAGAACAAAGCAAGTGCCTATCAAGGACGTTTGGAGACTGTACTC
CGCGAAGTGCACACGCTAGAAGCAATACATGCAGACTACAATCTAGCGCT
GGACAAGCTGCGGACGTCCATTGACCCGGCCCACCTTCGTCTTTACCTCA
AGCGACTCAAAACTCAAAACACAGAAGCAGCCAGGGGAGTACGCGAGTAC
GTATTACGTAGACAACACCTGGAGCATGAAGCTGACAGGCTGTTGGAAGA
GAGGACGAGAAGAACAGAGACAGAAGAAGAGGAAATCAAGCGGTTTGTCG
ACTCGAAAACGTTTGAGTTGTACCAGGAGTTGAGGGAACAGATGGAGATG
CTGGAACGGGCGGCCCAGAGGCAAGAAGAAGAGCTGGCTAAGGTTAAGCG
GAGAGAGGGAGAGGAGCAGCAAGAGCAGGAGGAGCAACAACAACACCCAC
AGAAGGACGATCCGGAGCAGCAGAAGTATCAACAACAGTACCAGGCTTTG
CGAGTCGAGTTACGGCGATTGGAGGGCATGCGACGGTATTTGGAGGAGGA
GGACATGCCCCTCGTGTCTTTATGGGCCAAGGACCGGGAGGAAGCAGAGG
CGCAGCTACAGACTAGAATGGAAAGGGATCAGCAGCGGGCGGACGAGGTC
GAAGATCAGTGTAGGGTTTTGAGGCAGGGAGGGAATGTAGGAAGAGGAGG
GGGATGGCAGGTTGTGGTGGAGAGAGCGAGGAAGGAGCGACAGCAGGCTC
AAGAAGATGCGAATATGCTGGATGTGAAGCTTTACAGTAGTAACAATACC
AACAATAAGAATAATAACGTAAGCGACAAATCAATAAAGCATAAAGCAGA
AGAGCACGCGGTGAATGATGATGACTTGAATCCCGACGCATACAACAGCG
AGGTCATTGTAGAGCTACTTAAAGAACGGGCTAAGCGCTTGGGGGAACTG
AAAAGGGTGCGGGTAATGAAAGGGAGAATAACAGTCGAAATAAATGCGGT
GAACAAAAAGAAGAAAACGTTGAAAGAGGAGATGGGTGTGTGGGCAAGGT
GCTTGTTGGACGAAGGAGGGATAAAAGGAGGAGGAGAAGAAGAAAAAAAG
CAGCTGAAGGAGGAATGTTTGGAACTCGTGGAGAGATTGAATGCGTTGCT
ATGTGATGCAGGGGAGCGGGTAAGGTGA
back to top

protein sequence of NO09G01630.1

>NO09G01630.1-protein ID=NO09G01630.1-protein|Name=NO09G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MADASSLSIILRQRINEIAQEVLRLKEEHAALVRAKNKASAYQGRLETVL
REVHTLEAIHADYNLALDKLRTSIDPAHLRLYLKRLKTQNTEAARGVREY
VLRRQHLEHEADRLLEERTRRTETEEEEIKRFVDSKTFELYQELREQMEM
LERAAQRQEEELAKVKRREGEEQQEQEEQQQHPQKDDPEQQKYQQQYQAL
RVELRRLEGMRRYLEEEDMPLVSLWAKDREEAEAQLQTRMERDQQRADEV
EDQCRVLRQGGNVGRGGGWQVVVERARKERQQAQEDANMLDVKLYSSNNT
NNKNNNVSDKSIKHKAEEHAVNDDDLNPDAYNSEVIVELLKERAKRLGEL
KRVRVMKGRITVEINAVNKKKKTLKEEMGVWARCLLDEGGIKGGGEEEKK
QLKEECLELVERLNALLCDAGERVR*
back to top

mRNA from alignment at chr9:514458..515735-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01630.1 ID=NO09G01630.1|Name=NO09G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp|location=Sequence derived from alignment at chr9:514458..515735- (Nannochloropsis oceanica)
ATGGCGGATGCCTCGTCCCTGTCCATCATTTTGAGACAGCGCATCAATGA
AATAGCTCAAGAAGTGCTGCGGCTAAAAGAGGAGCATGCGGCCCTCGTTC
GCGCCAAGAACAAAGCAAGTGCCTATCAAGGACGTTTGGAGACTGTACTC
CGCGAAGTGCACACGCTAGAAGCAATACATGCAGACTACAATCTAGCGCT
GGACAAGCTGCGGACGTCCATTGACCCGGCCCACCTTCGTCTTTACCTCA
AGCGACTCAAAACTCAAAACACAGAAGCAGCCAGGGGAGTACGCGAGTAC
GTATTACGTAGACAACACCTGGAGCATGAAGCTGACAGGCTGTTGGAAGA
GAGGACGAGAAGAACAGAGACAGAAGAAGAGGAAATCAAGCGGTTTGTCG
ACTCGAAAACGTTTGAGTTGTACCAGGAGTTGAGGGAACAGATGGAGATG
CTGGAACGGGCGGCCCAGAGGCAAGAAGAAGAGCTGGCTAAGGTTAAGCG
GAGAGAGGGAGAGGAGCAGCAAGAGCAGGAGGAGCAACAACAACACCCAC
AGAAGGACGATCCGGAGCAGCAGAAGTATCAACAACAGTACCAGGCTTTG
CGAGTCGAGTTACGGCGATTGGAGGGCATGCGACGGTATTTGGAGGAGGA
GGACATGCCCCTCGTGTCTTTATGGGCCAAGGACCGGGAGGAAGCAGAGG
CGCAGCTACAGACTAGAATGGAAAGGGATCAGCAGCGGGCGGACGAGGTC
GAAGATCAGTGTAGGGTTTTGAGGCAGGGAGGGAATGTAGGAAGAGGAGG
GGGATGGCAGGTTGTGGTGGAGAGAGCGAGGAAGGAGCGACAGCAGGCTC
AAGAAGATGCGAATATGCTGGATGTGAAGCTTTACAGTAGTAACAATACC
AACAATAAGAATAATAACGTAAGCGACAAATCAATAAAGCATAAAGCAGA
AGAGCACGCGGTGAATGATGATGACTTGAATCCCGACGCATACAACAGCG
AGGTCATTGTAGAGCTACTTAAAGAACGGGCTAAGCGCTTGGGGGAACTG
AAAAGGGTGCGGGTAATGAAAGGGAGAATAACAGTCGAAATAAATGCGGT
GAACAAAAAGAAGAAAACGTTGAAAGAGGAGATGGGTGTGTGGGCAAGGT
GCTTGTTGGACGAAGGAGGGATAAAAGGAGGAGGAGAAGAAGAAAAAAAG
CAGCTGAAGGAGGAATGTTTGGAACTCGTGGAGAGATTGAATGCGTTGCT
ATGTGATGCAGGGGAGCGGGTAAGGTGA
back to top

Coding sequence (CDS) from alignment at chr9:514458..515735-

>NO09G01630.1 ID=NO09G01630.1|Name=NO09G01630.1|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at chr9:514458..515735- (Nannochloropsis oceanica)
ATGGCGGATGCCTCGTCCCTGTCCATCATTTTGAGACAGCGCATCAATGA
AATAGCTCAAGAAGTGCTGCGGCTAAAAGAGGAGCATGCGGCCCTCGTTC
GCGCCAAGAACAAAGCAAGTGCCTATCAAGGACGTTTGGAGACTGTACTC
CGCGAAGTGCACACGCTAGAAGCAATACATGCAGACTACAATCTAGCGCT
GGACAAGCTGCGGACGTCCATTGACCCGGCCCACCTTCGTCTTTACCTCA
AGCGACTCAAAACTCAAAACACAGAAGCAGCCAGGGGAGTACGCGAGTAC
GTATTACGTAGACAACACCTGGAGCATGAAGCTGACAGGCTGTTGGAAGA
GAGGACGAGAAGAACAGAGACAGAAGAAGAGGAAATCAAGCGGTTTGTCG
ACTCGAAAACGTTTGAGTTGTACCAGGAGTTGAGGGAACAGATGGAGATG
CTGGAACGGGCGGCCCAGAGGCAAGAAGAAGAGCTGGCTAAGGTTAAGCG
GAGAGAGGGAGAGGAGCAGCAAGAGCAGGAGGAGCAACAACAACACCCAC
AGAAGGACGATCCGGAGCAGCAGAAGTATCAACAACAGTACCAGGCTTTG
CGAGTCGAGTTACGGCGATTGGAGGGCATGCGACGGTATTTGGAGGAGGA
GGACATGCCCCTCGTGTCTTTATGGGCCAAGGACCGGGAGGAAGCAGAGG
CGCAGCTACAGACTAGAATGGAAAGGGATCAGCAGCGGGCGGACGAGGTC
GAAGATCAGTGTAGGGTTTTGAGGCAGGGAGGGAATGTAGGAAGAGGAGG
GGGATGGCAGGTTGTGGTGGAGAGAGCGAGGAAGGAGCGACAGCAGGCTC
AAGAAGATGCGAATATGCTGGATGTGAAGCTTTACAGTAGTAACAATACC
AACAATAAGAATAATAACGTAAGCGACAAATCAATAAAGCATAAAGCAGA
AGAGCACGCGGTGAATGATGATGACTTGAATCCCGACGCATACAACAGCG
AGGTCATTGTAGAGCTACTTAAAGAACGGGCTAAGCGCTTGGGGGAACTG
AAAAGGGTGCGGGTAATGAAAGGGAGAATAACAGTCGAAATAAATGCGGT
GAACAAAAAGAAGAAAACGTTGAAAGAGGAGATGGGTGTGTGGGCAAGGT
GCTTGTTGGACGAAGGAGGGATAAAAGGAGGAGGAGAAGAAGAAAAAAAG
CAGCTGAAGGAGGAATGTTTGGAACTCGTGGAGAGATTGAATGCGTTGCT
ATGTGATGCAGGGGAGCGGGTAAGGTGA
back to top
Synonyms
Publications