NO09G01610.1, NO09G01610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01610.1
Unique NameNO09G01610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3888
Alignment locationchr9:505833..509720 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:505833..509720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G01610.1 vs.
Match: XP_005852447.1 (DNA repair protein REV1, partial [Nannochloropsis gaditana CCMP526]; EKU23384.1 DNA repair protein REV1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 862.8 bits (2228), Expect = 1.300e-246
Identity = 478/781 (61.20%), Postives = 557/781 (71.32%), Query Frame = 0
Query:    8 SNHKRPPPPVPQVGEHHGGSFGVYMSHKIQRLNEQLNERRGKDDVPASRIFEGMRFFVNGWTPLPVEELRALVHDHGGHIAAYETSDVTHMLCTNLPHAKLKQRRAQKLARGAHQQLPVIHPDYVQACVDKGRRLPPGDFLVDGVKHHHGQGIQSFMNQGKARDSDVGSGGGGSSDTKICAVAGGSGGKANNTARATSSTTRIVDINLLDIPAAVQETNETPPRLGTTQLTSSHHLQTATAAAAAASPYRPHLLHDVNNKCLKDKPLSSLAP----------------LLPDGGKT--TPTASPLPPQSSSPLKGL--LDNKNDTITNAGG---GGPLSTKDDPNFLQKYFKSSRLHFIGSFRARMQDLAADHARKCRAARATANTMSSSSSNNNNPCRLIMHVDMDCYFVSALIRDLPHLTHQPVAVAHGEGLDRNNCSSSEISSCNYPARAKGVRAGMFIGEARKLCPGLKMLHYDFGVYEKVSHAMYQVFFEEEAAMVVQPVSCDEAYIELVPGTDPEEAARRVRRRLMEKTRCPASAGVGGNMLLARLATKQAKPSGHKVMLRLEEAMTYLQELPLREIPGVGLELGMKLDQKGLGTCGEMWRVSMPALQSWFGEKTGSMLYRASRGQDDREVIPKVARKSVGAEVNWGVRFEERGEVEVFVGKLAEEVAVRMREARVRGRHLTFKIKRSQYGPKEPEKLLGCGRCDNLSRSVGLARATDAGKEIGMVSLRLLRQLNVPPDLVRGVGIQLTKLVVEGGEEGGEEGGGGRIQTWLMKS 766
            S  KRP PP P VGE HGG FGVYM HKIQRL+ QLNE+ G++DVP SRIFEGM FF+NG+TPLPVEELRALVH+HGGH+AAYETS+VTH+LCTNLPHAKLKQRRAQKLARGAHQQLPVIHPDY+ A +++GRRLPP DFLVDGVK+HHGQGIQ+FM +        G GG      +  A A         TA AT  T          +PA    +N+     G     +   L+ AT      SP    +            P SS  P                 L  G K   +P + PLP  S++P         + D   NA G   GG LSTK+DP+F++KYFKSSRLHFIGSFRARMQDLAA+HAR  RAARA  ++ +  S+  +   RLIMHVDMDCYFVSAL+RD P L  +PVAVAHGEG +R+  SSSEISSCNYPARA GVRAGMF+GEA++LCPGLK+LHYDF VYE+VS AMYQ+FFEE  A VVQPVSCDEAY+EL  GTDPE AARRVRRRLME TRCPASAGVG NMLLARLATK AKP+GH VML  EE+M YL+ LP+REIPGVG E   KL+++GL TCG++W V +P LQSW G KTGSMLYRA RGQDDR V+P+  RKSVGAEVNWGVRF +  +VEVFV +LA EVA R+ +A+V+ RHLTFKIKRSQYGP EPEKLLGCGRCDNLSRSV LAR TD   +I  VSLRLL QL VPP L+RG+GIQL+ L+V+G     ++ G G +Q WL K+
Sbjct:    3 SAKKRPVPP-PLVGEPHGGDFGVYMQHKIQRLHAQLNEKSGEEDVPISRIFEGMVFFINGFTPLPVEELRALVHEHGGHVAAYETSNVTHILCTNLPHAKLKQRRAQKLARGAHQQLPVIHPDYILASIEQGRRLPPADFLVDGVKYHHGQGIQAFMPR------RCGDGG-----ARRAASALHGPALDLTTALATEGTA-------FAVPADTPVSNDD---AGWNASEAHQELERAT-VLGPVSPAATAVEETSQTPPRSPSPSSSPGPSTALPHREERMTPPYHTLAGGSKASWSPLSPPLPSPSTTPSSRSRPTGRRADGGQNAAGSVTGGLLSTKEDPDFIKKYFKSSRLHFIGSFRARMQDLAAEHARARRAARAVQSSEAGESNMRHCQRRLIMHVDMDCYFVSALVRDRPELAGKPVAVAHGEGQERH--SSSEISSCNYPARATGVRAGMFVGEAQRLCPGLKVLHYDFEVYERVSRAMYQIFFEE--AEVVQPVSCDEAYLELAAGTDPEAAARRVRRRLMEATRCPASAGVGRNMLLARLATKHAKPNGHHVMLGAEESMVYLENLPVREIPGVGWESDAKLERRGLRTCGQLWEVRLPQLQSWLGPKTGSMLYRACRGQDDRPVVPQTTRKSVGAEVNWGVRFSQEEQVEVFVDRLAVEVAQRLAQAKVQARHLTFKIKRSQYGPNEPEKLLGCGRCDNLSRSVALARPTDGPADIAAVSLRLLAQLQVPPALIRGLGIQLSNLLVDGQAGVPDKKGAGSMQAWLQKT 756          
The following BLAST results are available for this feature:
BLAST of NO09G01610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852447.11.300e-24661.20DNA repair protein REV1, partial [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01610NO09G01610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01610.1NO09G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01610.1.cds1NO09G01610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01610.1 ID=NO09G01610.1|Name=NO09G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=3888bp
ATGTCTTCCCCGTCTCCACCCTCGAACCATAAGCGGCCTCCCCCTCCCGT
GCCTCAGGTCGGGGAGCACCATGGCGGAAGCTTTGGTGTTTACATGTCCC
ATAAAATCCAGCGTCTTAACGAGCAGCTAAACGAGCGTAGGGGAAAAGAT
GACGTGCCTGCGAGCCGGATTTTTGAAGGCATGCGGTTCTTTGTGAATGG
ATGGACGCCTTTGCCCGTGGAAGAGCTCCGGGCGTTGGTACATGATCATG
GGGGGCACATTGCGGCGTATGAAACTTCGGACGTCACGCACATGTTGTGT
ACAAACCTACCTCACGCCAAACTCAAGCAACGGCGTGCGCAAAAGCTTGC
TCGTGGAGCGCACCAGCAGCTTCCCGTGATACATCCCGACTACGTGCAGG
CCTGTGTTGATAAAGGTCGTCGGCTGCCCCCTGGTGATTTTCTTGTGGAC
GGTGTGAAGCATCACCATGGTCAGGGCATTCAGTCGTTTATGAATCAGGG
GAAGGCTCGGGATAGTGATGTTGGTAGTGGTGGTGGAGGCAGTTCAGACA
CAAAAATTTGCGCCGTAGCTGGGGGGAGTGGCGGCAAGGCCAACAACACA
GCGCGAGCAACTAGCTCGACGACCAGAATTGTAGATATCAACTTACTAGA
CATACCAGCGGCAGTGCAAGAGACAAATGAGACACCCCCACGGTTGGGGA
CCACACAGCTCACCTCCTCGCACCACCTTCAGACGGCAACAGCAGCAGCA
GCAGCAGCATCGCCATACCGCCCTCACCTGCTGCACGATGTGAATAATAA
GTGTCTAAAAGATAAGCCACTTTCTTCACTCGCTCCCTTGTTGCCAGATG
GCGGAAAAACTACCCCAACTGCATCGCCACTCCCACCCCAGTCCTCTTCC
CCCTTGAAAGGGCTGCTCGACAACAAAAACGATACCATCACTAACGCCGG
CGGTGGCGGGCCACTTTCCACCAAAGACGATCCAAATTTTCTTCAAAAGT
ACTTCAAATCCTCCCGTCTCCATTTCATCGGTAGCTTCCGCGCACGCATG
CAAGACTTAGCCGCCGATCACGCCCGGAAATGCCGCGCAGCACGAGCAAC
AGCGAACACGATGAGCAGCAGCAGCAGCAATAATAATAATCCTTGTCGTC
TTATCATGCACGTGGACATGGACTGCTACTTTGTCAGCGCCCTTATTCGG
GATCTCCCCCATCTTACTCACCAACCCGTCGCTGTGGCGCACGGTGAAGG
CCTCGACCGGAACAACTGCAGTAGCAGCGAGATCTCCTCGTGCAACTACC
CAGCTCGTGCGAAGGGTGTCAGGGCAGGAATGTTTATAGGAGAGGCTCGT
AAGTTATGCCCTGGGTTGAAGATGCTCCACTATGATTTTGGTGTGTATGA
AAAAGTGTCCCATGCTATGTACCAAGTTTTTTTTGAGGAGGAGGCCGCGA
TGGTCGTCCAACCTGTTTCGTGCGACGAGGCTTACATTGAGCTTGTGCCA
GGGACGGACCCTGAGGAAGCAGCACGGAGGGTGAGGAGACGACTGATGGA
AAAGACACGGTGTCCGGCAAGTGCGGGGGTGGGGGGAAATATGCTCTTGG
CGCGGTTGGCGACGAAGCAGGCGAAGCCGAGCGGGCATAAGGTGATGTTG
AGGTTGGAGGAGGCGATGACGTATTTGCAGGAGTTGCCACTTAGGGAAAT
ACCTGGCGTTGGGTTGGAGCTGGGGATGAAATTGGATCAAAAGGGGTTGG
GCACTTGTGGGGAGATGTGGAGGGTGAGCATGCCGGCGTTGCAGTCCTGG
TTTGGGGAGAAGACGGGCTCGATGTTATACAGGGCGAGTAGAGGGCAGGA
CGACCGAGAGGTGATTCCGAAGGTAGCGAGGAAGAGTGTTGGAGCCGAGG
TTAATTGGGGTGTACGATTTGAGGAGAGAGGGGAGGTTGAGGTCTTTGTG
GGCAAGTTGGCGGAGGAAGTAGCAGTGAGAATGAGGGAGGCGAGGGTGAG
GGGACGGCATTTGACGTTCAAAATTAAACGGTCGCAGTATGGGCCGAAGG
AGCCGGAGAAATTGTTGGGGTGTGGGAGGTGCGACAATTTGAGTCGTTCG
GTGGGGTTGGCAAGAGCGACGGATGCAGGGAAAGAGATTGGGATGGTGTC
GTTGAGGTTGCTTAGGCAGCTGAATGTGCCTCCTGATTTGGTGAGGGGGG
TTGGGATTCAGCTAACCAAGCTGGTGGTGGAAGGGGGGGAAGAAGGGGGG
GAAGAAGGGGGAGGAGGGAGGATACAGACGTGGTTGATGAAATCGGGCGT
CGGTTGTGGCGGTCGTGGTGGGGACGAAAGCGAGAAAGAGGAAAAGAAGG
AGAAGGGGGCTGTGGAATTGGTGGTAGTGGAGGAAAACGAGGAGGAAGGG
TGGGAGGACGAGGATGAGATTGGTGACAAGGAGTGGCAGGGATGGAAGAA
GCAGTCCGCAAAGCTACCCTCTACGGGTCAGAAGGCCGAGGGAGGGAAGG
AAGGGAGAGAAGAAGTGCACCTTTCTCTTGAAAACTATGCGCTACCGCCG
CCATCTCAGATTGACGTCTCGGTCTTGACGGCACTGCCTCCGTCGATGCG
GACAGCGCTGGAGCTGCACTTGCAGCAACGGGAGCAGCGACAGTCATTGC
ACGAGCAGCACCAGGCGGAAGAGGAGGGGGCTGCCTGGAGCTCCCTCCAG
CACTGGGACGTGACCATGAGTCAGATCGACGATTCGACCCTTCGAGCTTT
GCCTTTAGACATGCAAAACGAAGTCCGCGCGGTCGTGCGTCGGAAGTGTC
CTGCTGCGACTCCTGCTGCGACCGATGCGGTGGCAGCTGCTGCAGCAGCT
GATAAAGCTCGGAGTTGTTGGTTCGGGAGCCCGGAGAACGATATCGGCGG
TAATGGCAGCAGCAGCAGCAGCAACGGCGGCGGCGGGAGCAGGAGTAAAG
GTGGAACTGGAGAAAAAGCAAGGTCCGTGGGTATTTCCCAAAGCCCTCCT
CAACGACAACATTACCAGCAGCAACAGCAGCAACAGCAGCAACAGCATCA
CCATCGCATGATGAGGCAGAGGCAATTGAAAATGCACGCATATGACCATT
CGGGTGCACAATTCAAAGGCTTGCCTGCACATGACGCGGCCTTTTTAACT
AACCTTCCCATGCCTCTACGCATTGAGACTTTGGCGGATCTGGAGCGACA
TAAACGGATGCATATCACAAGAGATATGACGGCCAGCAGCAGCAACGGCA
GCAGCGGCAACAAGAGCAGCATCATCATCAGCAACAGCAGTACATCTATG
TTACCCCCATCTCCGCGACTGCCCCCGGTGGTAGGACGGAAGCCGATGGA
AGAGGTGGTGATTGACGTGGACAAGGAGGAGGAGAAGGAACGTAAGCCAG
AACAAAGTAGCCAAAGCATGGAATATCGCACTCGCTTGTTTGTGGACGAG
GATGTGAATGATGTGAGGCGGGCGTTGGTAGAGTGGCTGCGAAATGTTCG
GGGGTCAGCCGGGGGGTCGGACGGGCGTAAATCCCTTCCACAGACGGCCC
ATTTGCAGCTGCTGGCCGTTTATCTGCTTGAGAGAGTGGATGAGGGAAGC
GAAGACGATGTATGGACATTGATGCGAAGTTTTCGGAGGTGGGTAACGAA
TGAAGGTCACGAGGCATGGCGTCTGGCTTATCGTGCTGTATTGGGAGTGT
TGGAGACCCGTGTGGCGGAGCGGGAACGGCCACAGGAGGAGCGGCTGCAG
GGATGGTCGGTGGAGGGCTCGGCTGTCGTGACAGGAGCAATCAAGTGGGC
GGGTTTGCAGTTGTAGTATCCCAACAAAAAACATAAATACAAGATGTATA
GATGAAACAAAATAAAGAAAAAGTACATACAAGAAAGA
back to top

protein sequence of NO09G01610.1

>NO09G01610.1-protein ID=NO09G01610.1-protein|Name=NO09G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1272bp
MSSPSPPSNHKRPPPPVPQVGEHHGGSFGVYMSHKIQRLNEQLNERRGKD
DVPASRIFEGMRFFVNGWTPLPVEELRALVHDHGGHIAAYETSDVTHMLC
TNLPHAKLKQRRAQKLARGAHQQLPVIHPDYVQACVDKGRRLPPGDFLVD
GVKHHHGQGIQSFMNQGKARDSDVGSGGGGSSDTKICAVAGGSGGKANNT
ARATSSTTRIVDINLLDIPAAVQETNETPPRLGTTQLTSSHHLQTATAAA
AAASPYRPHLLHDVNNKCLKDKPLSSLAPLLPDGGKTTPTASPLPPQSSS
PLKGLLDNKNDTITNAGGGGPLSTKDDPNFLQKYFKSSRLHFIGSFRARM
QDLAADHARKCRAARATANTMSSSSSNNNNPCRLIMHVDMDCYFVSALIR
DLPHLTHQPVAVAHGEGLDRNNCSSSEISSCNYPARAKGVRAGMFIGEAR
KLCPGLKMLHYDFGVYEKVSHAMYQVFFEEEAAMVVQPVSCDEAYIELVP
GTDPEEAARRVRRRLMEKTRCPASAGVGGNMLLARLATKQAKPSGHKVML
RLEEAMTYLQELPLREIPGVGLELGMKLDQKGLGTCGEMWRVSMPALQSW
FGEKTGSMLYRASRGQDDREVIPKVARKSVGAEVNWGVRFEERGEVEVFV
GKLAEEVAVRMREARVRGRHLTFKIKRSQYGPKEPEKLLGCGRCDNLSRS
VGLARATDAGKEIGMVSLRLLRQLNVPPDLVRGVGIQLTKLVVEGGEEGG
EEGGGGRIQTWLMKSGVGCGGRGGDESEKEEKKEKGAVELVVVEENEEEG
WEDEDEIGDKEWQGWKKQSAKLPSTGQKAEGGKEGREEVHLSLENYALPP
PSQIDVSVLTALPPSMRTALELHLQQREQRQSLHEQHQAEEEGAAWSSLQ
HWDVTMSQIDDSTLRALPLDMQNEVRAVVRRKCPAATPAATDAVAAAAAA
DKARSCWFGSPENDIGGNGSSSSSNGGGGSRSKGGTGEKARSVGISQSPP
QRQHYQQQQQQQQQQHHHRMMRQRQLKMHAYDHSGAQFKGLPAHDAAFLT
NLPMPLRIETLADLERHKRMHITRDMTASSSNGSSGNKSSIIISNSSTSM
LPPSPRLPPVVGRKPMEEVVIDVDKEEEKERKPEQSSQSMEYRTRLFVDE
DVNDVRRALVEWLRNVRGSAGGSDGRKSLPQTAHLQLLAVYLLERVDEGS
EDDVWTLMRSFRRWVTNEGHEAWRLAYRAVLGVLETRVAERERPQEERLQ
GWSVEGSAVVTGAIKWAGLQL*
back to top

mRNA from alignment at chr9:505833..509720-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01610.1 ID=NO09G01610.1|Name=NO09G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=3888bp|location=Sequence derived from alignment at chr9:505833..509720- (Nannochloropsis oceanica)
ATGTCTTCCCCGTCTCCACCCTCGAACCATAAGCGGCCTCCCCCTCCCGT GCCTCAGGTCGGGGAGCACCATGGCGGAAGCTTTGGTGTTTACATGTCCC ATAAAATCCAGCGTCTTAACGAGCAGCTAAACGAGCGTAGGGGAAAAGAT GACGTGCCTGCGAGCCGGATTTTTGAAGGCATGCGGTTCTTTGTGAATGG ATGGACGCCTTTGCCCGTGGAAGAGCTCCGGGCGTTGGTACATGATCATG GGGGGCACATTGCGGCGTATGAAACTTCGGACGTCACGCACATGTTGTGT ACAAACCTACCTCACGCCAAACTCAAGCAACGGCGTGCGCAAAAGCTTGC TCGTGGAGCGCACCAGCAGCTTCCCGTGATACATCCCGACTACGTGCAGG CCTGTGTTGATAAAGGTCGTCGGCTGCCCCCTGGTGATTTTCTTGTGGAC GGTGTGAAGCATCACCATGGTCAGGGCATTCAGTCGTTTATGAATCAGGG GAAGGCTCGGGATAGTGATGTTGGTAGTGGTGGTGGAGGCAGTTCAGACA CAAAAATTTGCGCCGTAGCTGGGGGGAGTGGCGGCAAGGCCAACAACACA GCGCGAGCAACTAGCTCGACGACCAGAATTGTAGATATCAACTTACTAGA CATACCAGCGGCAGTGCAAGAGACAAATGAGACACCCCCACGGTTGGGGA CCACACAGCTCACCTCCTCGCACCACCTTCAGACGGCAACAGCAGCAGCA GCAGCAGCATCGCCATACCGCCCTCACCTGCTGCACGATGTGAATAATAA GTGTCTAAAAGATAAGCCACTTTCTTCACTCGCTCCCTTGTTGCCAGATG GCGGAAAAACTACCCCAACTGCATCGCCACTCCCACCCCAGTCCTCTTCC CCCTTGAAAGGGCTGCTCGACAACAAAAACGATACCATCACTAACGCCGG CGGTGGCGGGCCACTTTCCACCAAAGACGATCCAAATTTTCTTCAAAAGT ACTTCAAATCCTCCCGTCTCCATTTCATCGGTAGCTTCCGCGCACGCATG CAAGACTTAGCCGCCGATCACGCCCGGAAATGCCGCGCAGCACGAGCAAC AGCGAACACGATGAGCAGCAGCAGCAGCAATAATAATAATCCTTGTCGTC TTATCATGCACGTGGACATGGACTGCTACTTTGTCAGCGCCCTTATTCGG GATCTCCCCCATCTTACTCACCAACCCGTCGCTGTGGCGCACGGTGAAGG CCTCGACCGGAACAACTGCAGTAGCAGCGAGATCTCCTCGTGCAACTACC CAGCTCGTGCGAAGGGTGTCAGGGCAGGAATGTTTATAGGAGAGGCTCGT AAGTTATGCCCTGGGTTGAAGATGCTCCACTATGATTTTGGTGTGTATGA AAAAGTGTCCCATGCTATGTACCAAGTTTTTTTTGAGGAGGAGGCCGCGA TGGTCGTCCAACCTGTTTCGTGCGACGAGGCTTACATTGAGCTTGTGCCA GGGACGGACCCTGAGGAAGCAGCACGGAGGGTGAGGAGACGACTGATGGA AAAGACACGGTGTCCGGCAAGTGCGGGGGTGGGGGGAAATATGCTCTTGG CGCGGTTGGCGACGAAGCAGGCGAAGCCGAGCGGGCATAAGGTGATGTTG AGGTTGGAGGAGGCGATGACGTATTTGCAGGAGTTGCCACTTAGGGAAAT ACCTGGCGTTGGGTTGGAGCTGGGGATGAAATTGGATCAAAAGGGGTTGG GCACTTGTGGGGAGATGTGGAGGGTGAGCATGCCGGCGTTGCAGTCCTGG TTTGGGGAGAAGACGGGCTCGATGTTATACAGGGCGAGTAGAGGGCAGGA CGACCGAGAGGTGATTCCGAAGGTAGCGAGGAAGAGTGTTGGAGCCGAGG TTAATTGGGGTGTACGATTTGAGGAGAGAGGGGAGGTTGAGGTCTTTGTG GGCAAGTTGGCGGAGGAAGTAGCAGTGAGAATGAGGGAGGCGAGGGTGAG GGGACGGCATTTGACGTTCAAAATTAAACGGTCGCAGTATGGGCCGAAGG AGCCGGAGAAATTGTTGGGGTGTGGGAGGTGCGACAATTTGAGTCGTTCG GTGGGGTTGGCAAGAGCGACGGATGCAGGGAAAGAGATTGGGATGGTGTC GTTGAGGTTGCTTAGGCAGCTGAATGTGCCTCCTGATTTGGTGAGGGGGG TTGGGATTCAGCTAACCAAGCTGGTGGTGGAAGGGGGGGAAGAAGGGGGG GAAGAAGGGGGAGGAGGGAGGATACAGACGTGGTTGATGAAATCGGGCGT CGGTTGTGGCGGTCGTGGTGGGGACGAAAGCGAGAAAGAGGAAAAGAAGG AGAAGGGGGCTGTGGAATTGGTGGTAGTGGAGGAAAACGAGGAGGAAGGG TGGGAGGACGAGGATGAGATTGGTGACAAGGAGTGGCAGGGATGGAAGAA GCAGTCCGCAAAGCTACCCTCTACGGGTCAGAAGGCCGAGGGAGGGAAGG AAGGGAGAGAAGAAGTGCACCTTTCTCTTGAAAACTATGCGCTACCGCCG CCATCTCAGATTGACGTCTCGGTCTTGACGGCACTGCCTCCGTCGATGCG GACAGCGCTGGAGCTGCACTTGCAGCAACGGGAGCAGCGACAGTCATTGC ACGAGCAGCACCAGGCGGAAGAGGAGGGGGCTGCCTGGAGCTCCCTCCAG CACTGGGACGTGACCATGAGTCAGATCGACGATTCGACCCTTCGAGCTTT GCCTTTAGACATGCAAAACGAAGTCCGCGCGGTCGTGCGTCGGAAGTGTC CTGCTGCGACTCCTGCTGCGACCGATGCGGTGGCAGCTGCTGCAGCAGCT GATAAAGCTCGGAGTTGTTGGTTCGGGAGCCCGGAGAACGATATCGGCGG TAATGGCAGCAGCAGCAGCAGCAACGGCGGCGGCGGGAGCAGGAGTAAAG GTGGAACTGGAGAAAAAGCAAGGTCCGTGGGTATTTCCCAAAGCCCTCCT CAACGACAACATTACCAGCAGCAACAGCAGCAACAGCAGCAACAGCATCA CCATCGCATGATGAGGCAGAGGCAATTGAAAATGCACGCATATGACCATT CGGGTGCACAATTCAAAGGCTTGCCTGCACATGACGCGGCCTTTTTAACT AACCTTCCCATGCCTCTACGCATTGAGACTTTGGCGGATCTGGAGCGACA TAAACGGATGCATATCACAAGAGATATGACGGCCAGCAGCAGCAACGGCA GCAGCGGCAACAAGAGCAGCATCATCATCAGCAACAGCAGTACATCTATG TTACCCCCATCTCCGCGACTGCCCCCGGTGGTAGGACGGAAGCCGATGGA AGAGGTGGTGATTGACGTGGACAAGGAGGAGGAGAAGGAACGTAAGCCAG AACAAAGTAGCCAAAGCATGGAATATCGCACTCGCTTGTTTGTGGACGAG GATGTGAATGATGTGAGGCGGGCGTTGGTAGAGTGGCTGCGAAATGTTCG GGGGTCAGCCGGGGGGTCGGACGGGCGTAAATCCCTTCCACAGACGGCCC ATTTGCAGCTGCTGGCCGTTTATCTGCTTGAGAGAGTGGATGAGGGAAGC GAAGACGATGTATGGACATTGATGCGAAGTTTTCGGAGGTGGGTAACGAA TGAAGGTCACGAGGCATGGCGTCTGGCTTATCGTGCTGTATTGGGAGTGT TGGAGACCCGTGTGGCGGAGCGGGAACGGCCACAGGAGGAGCGGCTGCAG GGATGGTCGGTGGAGGGCTCGGCTGTCGTGACAGGAGCAATCAAGTGGGC GGGTTTGCAGTTGTAGTATCCCAACAAAAAACATAAATACAAGATGTATA GATGAAACAAAATAAAGAAAAAGTACATACAAGAAAGA
back to top

Coding sequence (CDS) from alignment at chr9:505833..509720-

>NO09G01610.1 ID=NO09G01610.1|Name=NO09G01610.1|organism=Nannochloropsis oceanica|type=CDS|length=3816bp|location=Sequence derived from alignment at chr9:505833..509720- (Nannochloropsis oceanica)
ATGTCTTCCCCGTCTCCACCCTCGAACCATAAGCGGCCTCCCCCTCCCGT
GCCTCAGGTCGGGGAGCACCATGGCGGAAGCTTTGGTGTTTACATGTCCC
ATAAAATCCAGCGTCTTAACGAGCAGCTAAACGAGCGTAGGGGAAAAGAT
GACGTGCCTGCGAGCCGGATTTTTGAAGGCATGCGGTTCTTTGTGAATGG
ATGGACGCCTTTGCCCGTGGAAGAGCTCCGGGCGTTGGTACATGATCATG
GGGGGCACATTGCGGCGTATGAAACTTCGGACGTCACGCACATGTTGTGT
ACAAACCTACCTCACGCCAAACTCAAGCAACGGCGTGCGCAAAAGCTTGC
TCGTGGAGCGCACCAGCAGCTTCCCGTGATACATCCCGACTACGTGCAGG
CCTGTGTTGATAAAGGTCGTCGGCTGCCCCCTGGTGATTTTCTTGTGGAC
GGTGTGAAGCATCACCATGGTCAGGGCATTCAGTCGTTTATGAATCAGGG
GAAGGCTCGGGATAGTGATGTTGGTAGTGGTGGTGGAGGCAGTTCAGACA
CAAAAATTTGCGCCGTAGCTGGGGGGAGTGGCGGCAAGGCCAACAACACA
GCGCGAGCAACTAGCTCGACGACCAGAATTGTAGATATCAACTTACTAGA
CATACCAGCGGCAGTGCAAGAGACAAATGAGACACCCCCACGGTTGGGGA
CCACACAGCTCACCTCCTCGCACCACCTTCAGACGGCAACAGCAGCAGCA
GCAGCAGCATCGCCATACCGCCCTCACCTGCTGCACGATGTGAATAATAA
GTGTCTAAAAGATAAGCCACTTTCTTCACTCGCTCCCTTGTTGCCAGATG
GCGGAAAAACTACCCCAACTGCATCGCCACTCCCACCCCAGTCCTCTTCC
CCCTTGAAAGGGCTGCTCGACAACAAAAACGATACCATCACTAACGCCGG
CGGTGGCGGGCCACTTTCCACCAAAGACGATCCAAATTTTCTTCAAAAGT
ACTTCAAATCCTCCCGTCTCCATTTCATCGGTAGCTTCCGCGCACGCATG
CAAGACTTAGCCGCCGATCACGCCCGGAAATGCCGCGCAGCACGAGCAAC
AGCGAACACGATGAGCAGCAGCAGCAGCAATAATAATAATCCTTGTCGTC
TTATCATGCACGTGGACATGGACTGCTACTTTGTCAGCGCCCTTATTCGG
GATCTCCCCCATCTTACTCACCAACCCGTCGCTGTGGCGCACGGTGAAGG
CCTCGACCGGAACAACTGCAGTAGCAGCGAGATCTCCTCGTGCAACTACC
CAGCTCGTGCGAAGGGTGTCAGGGCAGGAATGTTTATAGGAGAGGCTCGT
AAGTTATGCCCTGGGTTGAAGATGCTCCACTATGATTTTGGTGTGTATGA
AAAAGTGTCCCATGCTATGTACCAAGTTTTTTTTGAGGAGGAGGCCGCGA
TGGTCGTCCAACCTGTTTCGTGCGACGAGGCTTACATTGAGCTTGTGCCA
GGGACGGACCCTGAGGAAGCAGCACGGAGGGTGAGGAGACGACTGATGGA
AAAGACACGGTGTCCGGCAAGTGCGGGGGTGGGGGGAAATATGCTCTTGG
CGCGGTTGGCGACGAAGCAGGCGAAGCCGAGCGGGCATAAGGTGATGTTG
AGGTTGGAGGAGGCGATGACGTATTTGCAGGAGTTGCCACTTAGGGAAAT
ACCTGGCGTTGGGTTGGAGCTGGGGATGAAATTGGATCAAAAGGGGTTGG
GCACTTGTGGGGAGATGTGGAGGGTGAGCATGCCGGCGTTGCAGTCCTGG
TTTGGGGAGAAGACGGGCTCGATGTTATACAGGGCGAGTAGAGGGCAGGA
CGACCGAGAGGTGATTCCGAAGGTAGCGAGGAAGAGTGTTGGAGCCGAGG
TTAATTGGGGTGTACGATTTGAGGAGAGAGGGGAGGTTGAGGTCTTTGTG
GGCAAGTTGGCGGAGGAAGTAGCAGTGAGAATGAGGGAGGCGAGGGTGAG
GGGACGGCATTTGACGTTCAAAATTAAACGGTCGCAGTATGGGCCGAAGG
AGCCGGAGAAATTGTTGGGGTGTGGGAGGTGCGACAATTTGAGTCGTTCG
GTGGGGTTGGCAAGAGCGACGGATGCAGGGAAAGAGATTGGGATGGTGTC
GTTGAGGTTGCTTAGGCAGCTGAATGTGCCTCCTGATTTGGTGAGGGGGG
TTGGGATTCAGCTAACCAAGCTGGTGGTGGAAGGGGGGGAAGAAGGGGGG
GAAGAAGGGGGAGGAGGGAGGATACAGACGTGGTTGATGAAATCGGGCGT
CGGTTGTGGCGGTCGTGGTGGGGACGAAAGCGAGAAAGAGGAAAAGAAGG
AGAAGGGGGCTGTGGAATTGGTGGTAGTGGAGGAAAACGAGGAGGAAGGG
TGGGAGGACGAGGATGAGATTGGTGACAAGGAGTGGCAGGGATGGAAGAA
GCAGTCCGCAAAGCTACCCTCTACGGGTCAGAAGGCCGAGGGAGGGAAGG
AAGGGAGAGAAGAAGTGCACCTTTCTCTTGAAAACTATGCGCTACCGCCG
CCATCTCAGATTGACGTCTCGGTCTTGACGGCACTGCCTCCGTCGATGCG
GACAGCGCTGGAGCTGCACTTGCAGCAACGGGAGCAGCGACAGTCATTGC
ACGAGCAGCACCAGGCGGAAGAGGAGGGGGCTGCCTGGAGCTCCCTCCAG
CACTGGGACGTGACCATGAGTCAGATCGACGATTCGACCCTTCGAGCTTT
GCCTTTAGACATGCAAAACGAAGTCCGCGCGGTCGTGCGTCGGAAGTGTC
CTGCTGCGACTCCTGCTGCGACCGATGCGGTGGCAGCTGCTGCAGCAGCT
GATAAAGCTCGGAGTTGTTGGTTCGGGAGCCCGGAGAACGATATCGGCGG
TAATGGCAGCAGCAGCAGCAGCAACGGCGGCGGCGGGAGCAGGAGTAAAG
GTGGAACTGGAGAAAAAGCAAGGTCCGTGGGTATTTCCCAAAGCCCTCCT
CAACGACAACATTACCAGCAGCAACAGCAGCAACAGCAGCAACAGCATCA
CCATCGCATGATGAGGCAGAGGCAATTGAAAATGCACGCATATGACCATT
CGGGTGCACAATTCAAAGGCTTGCCTGCACATGACGCGGCCTTTTTAACT
AACCTTCCCATGCCTCTACGCATTGAGACTTTGGCGGATCTGGAGCGACA
TAAACGGATGCATATCACAAGAGATATGACGGCCAGCAGCAGCAACGGCA
GCAGCGGCAACAAGAGCAGCATCATCATCAGCAACAGCAGTACATCTATG
TTACCCCCATCTCCGCGACTGCCCCCGGTGGTAGGACGGAAGCCGATGGA
AGAGGTGGTGATTGACGTGGACAAGGAGGAGGAGAAGGAACGTAAGCCAG
AACAAAGTAGCCAAAGCATGGAATATCGCACTCGCTTGTTTGTGGACGAG
GATGTGAATGATGTGAGGCGGGCGTTGGTAGAGTGGCTGCGAAATGTTCG
GGGGTCAGCCGGGGGGTCGGACGGGCGTAAATCCCTTCCACAGACGGCCC
ATTTGCAGCTGCTGGCCGTTTATCTGCTTGAGAGAGTGGATGAGGGAAGC
GAAGACGATGTATGGACATTGATGCGAAGTTTTCGGAGGTGGGTAACGAA
TGAAGGTCACGAGGCATGGCGTCTGGCTTATCGTGCTGTATTGGGAGTGT
TGGAGACCCGTGTGGCGGAGCGGGAACGGCCACAGGAGGAGCGGCTGCAG
GGATGGTCGGTGGAGGGCTCGGCTGTCGTGACAGGAGCAATCAAGTGGGC
GGGTTTGCAGTTGTAG
back to top
Synonyms
Publications