NO09G01590.1, NO09G01590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01590.1
Unique NameNO09G01590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1779
Alignment locationchr9:501800..503578 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:501800..503578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G01590.1 vs.
Match: EWM27627.1 (Amino acid transporter, transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 651.4 bits (1679), Expect = 2.800e-183
Identity = 375/571 (65.67%), Postives = 437/571 (76.53%), Query Frame = 0
Query:   23 YGSLDSRLSLSSSADILPTRSRSGSSLPPHTCEHGLASHSPLFSSYALVLRHRESSGESLSPLCPRKNEEAAGSQGAYFTLVKVCMGTGALALPYAFLSGGLVWSALGIVLMAQWNYFAIQRLLACKELLDSVATGAEDVEANNVYAFIALKSLGRPGKLLVHVTMGITFIGCGVSYLIAASDLLESTPLSLLFVGAPIWTRFCNTLLCLLVVLPLSCTKSLSFLSYTSLFGVIALLLSFATIIALGINNTPPAATAAAAAAAAATGELPTKWARAFSTDAQGLSRFFGITCFSFGIPPLLFPIQGSMDRPEFLGSAVRLALVSVSAAYILIAEATVMLYDFAIPPNILSVLPDSDLATFVRLLMVMVCLLTYPLAIVPLCENVQNALEGPRVSRIYRWDSLQRGSSQYEERETSGFNHRASSASLQDQENGGTDTTAQGV--SPLSLLQGGCNGLTHMPRYQQRRSDAESVWSAKRLLLRTGIVFATAVLSTVVPCFGVVVSLMGAFSVAILSFVLPPLFHLTLFKARLLRTEALWDAGMFLLGLLACACATSLTAKSSLGPIAHSHRCP 592
            YG + S    S    ++P+RSR+GSSLP  T EH +  HSPLFSS ALVLR RES  E  S     K+E AAG +GA+FTLVKVCMGTGALALPYAFL+GGL W ALGI+LMA+WNYFA  RLLACKELLDS A GA+DVEAN+VYAFIALK+LGRPG +LV    G+TF+GCGVSYLIAASDLLE TP+SL++ G+PI+TR  NTLLC+LVVLPLSC KSLSFLSYTS FG+IALLLSF TIIALGIN+T P A AAAAAA  A G  P+ W RAF TDA+GLSRFFGI CFSFGIPPLLFPIQGSM  PEF   AV LALVSV+AAYILIAE  V+LYDF +PPNIL+VL  S L+T VRL MV+VC+LTYPLAIVPLCE+V+ ALEGPRV+RIYRW+SLQ  +  Y+ R+    +  +SS S+ DQ  G  +  ++    SP     G      HMPRYQQ  S + + WS + L+LR  IV ATA L+T+VPCFG VV+ +GAFSVAILSFVLPPLFHL LF ARLLR EAL D GMF LGL+ C  ATSLTA++++ P+  SH CP
Sbjct:   25 YGGIASTFPQSPEF-VVPSRSRTGSSLPLSTQEHRIIPHSPLFSSCALVLRTRESY-EDFSRQSRIKDEGAAGVEGAFFTLVKVCMGTGALALPYAFLNGGLFWGALGIILMARWNYFASNRLLACKELLDSAALGADDVEANDVYAFIALKALGRPGAILVRAATGVTFVGCGVSYLIAASDLLEITPVSLVWAGSPIFTRLANTLLCVLVVLPLSCAKSLSFLSYTSFFGIIALLLSFITIIALGINHTSPTAAAAAAAAVEAGGS-PSAWDRAFETDAKGLSRFFGIACFSFGIPPLLFPIQGSMPCPEFFRPAVGLALVSVAAAYILIAETVVLLYDFVVPPNILTVLSASPLSTTVRLSMVLVCVLTYPLAIVPLCESVEKALEGPRVARIYRWESLQGPTRYYQPRDEPEAS--SSSRSILDQCLGRREEISRETPRSPSDRPPG------HMPRYQQPHSKSRT-WSWRVLILRACIVLATAFLATLVPCFGGVVAFLGAFSVAILSFVLPPLFHLILFNARLLRREALIDVGMFFLGLVVCVGATSLTARTNIYPLVSSHTCP 583          
The following BLAST results are available for this feature:
BLAST of NO09G01590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27627.12.800e-18365.67Amino acid transporter, transmembrane [Nannochloro... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01590NO09G01590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01590.1NO09G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01590.1.cds1NO09G01590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01590.1 ID=NO09G01590.1|Name=NO09G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1779bp
ATGCCGCGCGACGAAGTCGTGGCCTCGTCCACACCACCACCACCACCACA
ATCAAAGCCGCGAAATTACGGGAGTCTAGATTCCAGGCTCTCCTTATCCT
CTTCTGCGGATATACTCCCGACCCGCTCTCGATCAGGCAGCAGCTTGCCT
CCCCATACATGCGAGCACGGCCTGGCTTCGCACTCCCCCCTCTTCTCCTC
TTACGCACTCGTACTACGACATCGGGAAAGCAGCGGTGAGTCCTTGTCCC
CCCTGTGTCCACGCAAAAATGAAGAAGCGGCGGGTTCACAAGGCGCTTAC
TTTACCTTGGTAAAAGTCTGCATGGGGACGGGAGCACTGGCCTTGCCCTA
CGCTTTCTTGAGCGGCGGGTTGGTGTGGAGTGCATTGGGCATTGTCTTGA
TGGCCCAATGGAATTATTTTGCCATTCAAAGACTGTTAGCATGCAAGGAG
CTGTTGGACTCGGTGGCGACGGGGGCGGAGGATGTGGAGGCGAATAATGT
GTATGCGTTTATTGCATTGAAGTCTCTGGGGCGACCGGGGAAGCTCCTTG
TTCACGTGACCATGGGCATCACTTTCATCGGATGCGGTGTCTCGTACTTA
ATTGCTGCGAGCGATTTATTAGAATCCACTCCTCTTAGCTTGCTATTCGT
GGGGGCGCCAATCTGGACGCGTTTCTGTAATACACTGCTGTGTTTACTTG
TGGTCCTCCCCTTGTCGTGTACCAAGTCCCTCTCCTTCCTTTCCTACACC
TCGCTGTTTGGAGTGATTGCCTTATTGCTCTCTTTTGCCACCATCATAGC
GCTTGGGATCAACAACACCCCTCCTGCCGCCACCGCTGCCGCTGCTGCTG
CTGCTGCGGCAACTGGGGAGCTACCAACTAAGTGGGCACGTGCCTTTTCT
ACAGATGCTCAAGGCCTCTCCAGGTTCTTTGGTATCACTTGCTTTTCTTT
CGGGATTCCTCCGCTACTCTTCCCGATTCAGGGAAGCATGGATCGGCCGG
AGTTTTTGGGGTCAGCCGTTAGGTTGGCGTTGGTGAGCGTGTCTGCTGCA
TACATTCTCATCGCAGAGGCGACAGTTATGTTGTATGATTTTGCCATCCC
CCCCAACATATTGTCGGTCCTGCCGGACTCGGATTTAGCCACGTTTGTCC
GGCTTTTGATGGTGATGGTATGTTTGCTCACCTATCCGTTGGCCATCGTC
CCCCTGTGTGAAAATGTGCAAAACGCCCTGGAAGGTCCACGTGTCTCGAG
GATATACCGTTGGGATTCTCTCCAACGTGGGTCAAGTCAATACGAGGAAC
GAGAAACATCCGGCTTCAATCACCGTGCTTCTTCCGCATCCCTCCAAGAT
CAAGAAAATGGCGGCACAGATACTACGGCACAGGGTGTCTCCCCTCTTTC
TCTGCTGCAAGGGGGATGCAATGGGCTAACCCACATGCCACGGTACCAGC
AAAGACGCTCTGACGCCGAATCTGTGTGGTCGGCAAAACGGCTGCTGTTA
CGTACTGGTATTGTATTTGCCACCGCAGTTCTCTCGACAGTGGTGCCGTG
TTTTGGGGTGGTGGTGTCGTTGATGGGTGCGTTTTCGGTGGCGATATTGA
GTTTTGTGTTGCCTCCCCTTTTCCATCTAACGCTGTTCAAGGCCAGGTTG
TTAAGGACGGAGGCGCTGTGGGACGCGGGCATGTTTCTGTTGGGGCTCTT
GGCGTGCGCGTGTGCGACGAGCTTGACGGCGAAAAGTAGCTTGGGGCCGA
TCGCGCATTCGCATCGGTGCCCTGGGTAA
back to top

protein sequence of NO09G01590.1

>NO09G01590.1-protein ID=NO09G01590.1-protein|Name=NO09G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=593bp
MPRDEVVASSTPPPPPQSKPRNYGSLDSRLSLSSSADILPTRSRSGSSLP
PHTCEHGLASHSPLFSSYALVLRHRESSGESLSPLCPRKNEEAAGSQGAY
FTLVKVCMGTGALALPYAFLSGGLVWSALGIVLMAQWNYFAIQRLLACKE
LLDSVATGAEDVEANNVYAFIALKSLGRPGKLLVHVTMGITFIGCGVSYL
IAASDLLESTPLSLLFVGAPIWTRFCNTLLCLLVVLPLSCTKSLSFLSYT
SLFGVIALLLSFATIIALGINNTPPAATAAAAAAAAATGELPTKWARAFS
TDAQGLSRFFGITCFSFGIPPLLFPIQGSMDRPEFLGSAVRLALVSVSAA
YILIAEATVMLYDFAIPPNILSVLPDSDLATFVRLLMVMVCLLTYPLAIV
PLCENVQNALEGPRVSRIYRWDSLQRGSSQYEERETSGFNHRASSASLQD
QENGGTDTTAQGVSPLSLLQGGCNGLTHMPRYQQRRSDAESVWSAKRLLL
RTGIVFATAVLSTVVPCFGVVVSLMGAFSVAILSFVLPPLFHLTLFKARL
LRTEALWDAGMFLLGLLACACATSLTAKSSLGPIAHSHRCPG*
back to top

mRNA from alignment at chr9:501800..503578+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01590.1 ID=NO09G01590.1|Name=NO09G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1779bp|location=Sequence derived from alignment at chr9:501800..503578+ (Nannochloropsis oceanica)
ATGCCGCGCGACGAAGTCGTGGCCTCGTCCACACCACCACCACCACCACA ATCAAAGCCGCGAAATTACGGGAGTCTAGATTCCAGGCTCTCCTTATCCT CTTCTGCGGATATACTCCCGACCCGCTCTCGATCAGGCAGCAGCTTGCCT CCCCATACATGCGAGCACGGCCTGGCTTCGCACTCCCCCCTCTTCTCCTC TTACGCACTCGTACTACGACATCGGGAAAGCAGCGGTGAGTCCTTGTCCC CCCTGTGTCCACGCAAAAATGAAGAAGCGGCGGGTTCACAAGGCGCTTAC TTTACCTTGGTAAAAGTCTGCATGGGGACGGGAGCACTGGCCTTGCCCTA CGCTTTCTTGAGCGGCGGGTTGGTGTGGAGTGCATTGGGCATTGTCTTGA TGGCCCAATGGAATTATTTTGCCATTCAAAGACTGTTAGCATGCAAGGAG CTGTTGGACTCGGTGGCGACGGGGGCGGAGGATGTGGAGGCGAATAATGT GTATGCGTTTATTGCATTGAAGTCTCTGGGGCGACCGGGGAAGCTCCTTG TTCACGTGACCATGGGCATCACTTTCATCGGATGCGGTGTCTCGTACTTA ATTGCTGCGAGCGATTTATTAGAATCCACTCCTCTTAGCTTGCTATTCGT GGGGGCGCCAATCTGGACGCGTTTCTGTAATACACTGCTGTGTTTACTTG TGGTCCTCCCCTTGTCGTGTACCAAGTCCCTCTCCTTCCTTTCCTACACC TCGCTGTTTGGAGTGATTGCCTTATTGCTCTCTTTTGCCACCATCATAGC GCTTGGGATCAACAACACCCCTCCTGCCGCCACCGCTGCCGCTGCTGCTG CTGCTGCGGCAACTGGGGAGCTACCAACTAAGTGGGCACGTGCCTTTTCT ACAGATGCTCAAGGCCTCTCCAGGTTCTTTGGTATCACTTGCTTTTCTTT CGGGATTCCTCCGCTACTCTTCCCGATTCAGGGAAGCATGGATCGGCCGG AGTTTTTGGGGTCAGCCGTTAGGTTGGCGTTGGTGAGCGTGTCTGCTGCA TACATTCTCATCGCAGAGGCGACAGTTATGTTGTATGATTTTGCCATCCC CCCCAACATATTGTCGGTCCTGCCGGACTCGGATTTAGCCACGTTTGTCC GGCTTTTGATGGTGATGGTATGTTTGCTCACCTATCCGTTGGCCATCGTC CCCCTGTGTGAAAATGTGCAAAACGCCCTGGAAGGTCCACGTGTCTCGAG GATATACCGTTGGGATTCTCTCCAACGTGGGTCAAGTCAATACGAGGAAC GAGAAACATCCGGCTTCAATCACCGTGCTTCTTCCGCATCCCTCCAAGAT CAAGAAAATGGCGGCACAGATACTACGGCACAGGGTGTCTCCCCTCTTTC TCTGCTGCAAGGGGGATGCAATGGGCTAACCCACATGCCACGGTACCAGC AAAGACGCTCTGACGCCGAATCTGTGTGGTCGGCAAAACGGCTGCTGTTA CGTACTGGTATTGTATTTGCCACCGCAGTTCTCTCGACAGTGGTGCCGTG TTTTGGGGTGGTGGTGTCGTTGATGGGTGCGTTTTCGGTGGCGATATTGA GTTTTGTGTTGCCTCCCCTTTTCCATCTAACGCTGTTCAAGGCCAGGTTG TTAAGGACGGAGGCGCTGTGGGACGCGGGCATGTTTCTGTTGGGGCTCTT GGCGTGCGCGTGTGCGACGAGCTTGACGGCGAAAAGTAGCTTGGGGCCGA TCGCGCATTCGCATCGGTGCCCTGGGTAA
back to top

Coding sequence (CDS) from alignment at chr9:501800..503578+

>NO09G01590.1 ID=NO09G01590.1|Name=NO09G01590.1|organism=Nannochloropsis oceanica|type=CDS|length=1779bp|location=Sequence derived from alignment at chr9:501800..503578+ (Nannochloropsis oceanica)
ATGCCGCGCGACGAAGTCGTGGCCTCGTCCACACCACCACCACCACCACA
ATCAAAGCCGCGAAATTACGGGAGTCTAGATTCCAGGCTCTCCTTATCCT
CTTCTGCGGATATACTCCCGACCCGCTCTCGATCAGGCAGCAGCTTGCCT
CCCCATACATGCGAGCACGGCCTGGCTTCGCACTCCCCCCTCTTCTCCTC
TTACGCACTCGTACTACGACATCGGGAAAGCAGCGGTGAGTCCTTGTCCC
CCCTGTGTCCACGCAAAAATGAAGAAGCGGCGGGTTCACAAGGCGCTTAC
TTTACCTTGGTAAAAGTCTGCATGGGGACGGGAGCACTGGCCTTGCCCTA
CGCTTTCTTGAGCGGCGGGTTGGTGTGGAGTGCATTGGGCATTGTCTTGA
TGGCCCAATGGAATTATTTTGCCATTCAAAGACTGTTAGCATGCAAGGAG
CTGTTGGACTCGGTGGCGACGGGGGCGGAGGATGTGGAGGCGAATAATGT
GTATGCGTTTATTGCATTGAAGTCTCTGGGGCGACCGGGGAAGCTCCTTG
TTCACGTGACCATGGGCATCACTTTCATCGGATGCGGTGTCTCGTACTTA
ATTGCTGCGAGCGATTTATTAGAATCCACTCCTCTTAGCTTGCTATTCGT
GGGGGCGCCAATCTGGACGCGTTTCTGTAATACACTGCTGTGTTTACTTG
TGGTCCTCCCCTTGTCGTGTACCAAGTCCCTCTCCTTCCTTTCCTACACC
TCGCTGTTTGGAGTGATTGCCTTATTGCTCTCTTTTGCCACCATCATAGC
GCTTGGGATCAACAACACCCCTCCTGCCGCCACCGCTGCCGCTGCTGCTG
CTGCTGCGGCAACTGGGGAGCTACCAACTAAGTGGGCACGTGCCTTTTCT
ACAGATGCTCAAGGCCTCTCCAGGTTCTTTGGTATCACTTGCTTTTCTTT
CGGGATTCCTCCGCTACTCTTCCCGATTCAGGGAAGCATGGATCGGCCGG
AGTTTTTGGGGTCAGCCGTTAGGTTGGCGTTGGTGAGCGTGTCTGCTGCA
TACATTCTCATCGCAGAGGCGACAGTTATGTTGTATGATTTTGCCATCCC
CCCCAACATATTGTCGGTCCTGCCGGACTCGGATTTAGCCACGTTTGTCC
GGCTTTTGATGGTGATGGTATGTTTGCTCACCTATCCGTTGGCCATCGTC
CCCCTGTGTGAAAATGTGCAAAACGCCCTGGAAGGTCCACGTGTCTCGAG
GATATACCGTTGGGATTCTCTCCAACGTGGGTCAAGTCAATACGAGGAAC
GAGAAACATCCGGCTTCAATCACCGTGCTTCTTCCGCATCCCTCCAAGAT
CAAGAAAATGGCGGCACAGATACTACGGCACAGGGTGTCTCCCCTCTTTC
TCTGCTGCAAGGGGGATGCAATGGGCTAACCCACATGCCACGGTACCAGC
AAAGACGCTCTGACGCCGAATCTGTGTGGTCGGCAAAACGGCTGCTGTTA
CGTACTGGTATTGTATTTGCCACCGCAGTTCTCTCGACAGTGGTGCCGTG
TTTTGGGGTGGTGGTGTCGTTGATGGGTGCGTTTTCGGTGGCGATATTGA
GTTTTGTGTTGCCTCCCCTTTTCCATCTAACGCTGTTCAAGGCCAGGTTG
TTAAGGACGGAGGCGCTGTGGGACGCGGGCATGTTTCTGTTGGGGCTCTT
GGCGTGCGCGTGTGCGACGAGCTTGACGGCGAAAAGTAGCTTGGGGCCGA
TCGCGCATTCGCATCGGTGCCCTGGGTAA
back to top
Synonyms
Publications