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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:501800..503578 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G01590.1 vs.
Match: EWM27627.1 (Amino acid transporter, transmembrane [Nannochloropsis gaditana]) HSP 1 Score: 651.4 bits (1679), Expect = 2.800e-183 Identity = 375/571 (65.67%), Postives = 437/571 (76.53%), Query Frame = 0
Query: 23 YGSLDSRLSLSSSADILPTRSRSGSSLPPHTCEHGLASHSPLFSSYALVLRHRESSGESLSPLCPRKNEEAAGSQGAYFTLVKVCMGTGALALPYAFLSGGLVWSALGIVLMAQWNYFAIQRLLACKELLDSVATGAEDVEANNVYAFIALKSLGRPGKLLVHVTMGITFIGCGVSYLIAASDLLESTPLSLLFVGAPIWTRFCNTLLCLLVVLPLSCTKSLSFLSYTSLFGVIALLLSFATIIALGINNTPPAATAAAAAAAAATGELPTKWARAFSTDAQGLSRFFGITCFSFGIPPLLFPIQGSMDRPEFLGSAVRLALVSVSAAYILIAEATVMLYDFAIPPNILSVLPDSDLATFVRLLMVMVCLLTYPLAIVPLCENVQNALEGPRVSRIYRWDSLQRGSSQYEERETSGFNHRASSASLQDQENGGTDTTAQGV--SPLSLLQGGCNGLTHMPRYQQRRSDAESVWSAKRLLLRTGIVFATAVLSTVVPCFGVVVSLMGAFSVAILSFVLPPLFHLTLFKARLLRTEALWDAGMFLLGLLACACATSLTAKSSLGPIAHSHRCP 592
YG + S S ++P+RSR+GSSLP T EH + HSPLFSS ALVLR RES E S K+E AAG +GA+FTLVKVCMGTGALALPYAFL+GGL W ALGI+LMA+WNYFA RLLACKELLDS A GA+DVEAN+VYAFIALK+LGRPG +LV G+TF+GCGVSYLIAASDLLE TP+SL++ G+PI+TR NTLLC+LVVLPLSC KSLSFLSYTS FG+IALLLSF TIIALGIN+T P A AAAAAA A G P+ W RAF TDA+GLSRFFGI CFSFGIPPLLFPIQGSM PEF AV LALVSV+AAYILIAE V+LYDF +PPNIL+VL S L+T VRL MV+VC+LTYPLAIVPLCE+V+ ALEGPRV+RIYRW+SLQ + Y+ R+ + +SS S+ DQ G + ++ SP G HMPRYQQ S + + WS + L+LR IV ATA L+T+VPCFG VV+ +GAFSVAILSFVLPPLFHL LF ARLLR EAL D GMF LGL+ C ATSLTA++++ P+ SH CP
Sbjct: 25 YGGIASTFPQSPEF-VVPSRSRTGSSLPLSTQEHRIIPHSPLFSSCALVLRTRESY-EDFSRQSRIKDEGAAGVEGAFFTLVKVCMGTGALALPYAFLNGGLFWGALGIILMARWNYFASNRLLACKELLDSAALGADDVEANDVYAFIALKALGRPGAILVRAATGVTFVGCGVSYLIAASDLLEITPVSLVWAGSPIFTRLANTLLCVLVVLPLSCAKSLSFLSYTSFFGIIALLLSFITIIALGINHTSPTAAAAAAAAVEAGGS-PSAWDRAFETDAKGLSRFFGIACFSFGIPPLLFPIQGSMPCPEFFRPAVGLALVSVAAAYILIAETVVLLYDFVVPPNILTVLSASPLSTTVRLSMVLVCVLTYPLAIVPLCESVEKALEGPRVARIYRWESLQGPTRYYQPRDEPEAS--SSSRSILDQCLGRREEISRETPRSPSDRPPG------HMPRYQQPHSKSRT-WSWRVLILRACIVLATAFLATLVPCFGGVVAFLGAFSVAILSFVLPPLFHLILFNARLLRREALIDVGMFFLGLVVCVGATSLTARTNIYPLVSSHTCP 583
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G01590.1 ID=NO09G01590.1|Name=NO09G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1779bp ATGCCGCGCGACGAAGTCGTGGCCTCGTCCACACCACCACCACCACCACA ATCAAAGCCGCGAAATTACGGGAGTCTAGATTCCAGGCTCTCCTTATCCT CTTCTGCGGATATACTCCCGACCCGCTCTCGATCAGGCAGCAGCTTGCCT CCCCATACATGCGAGCACGGCCTGGCTTCGCACTCCCCCCTCTTCTCCTC TTACGCACTCGTACTACGACATCGGGAAAGCAGCGGTGAGTCCTTGTCCC CCCTGTGTCCACGCAAAAATGAAGAAGCGGCGGGTTCACAAGGCGCTTAC TTTACCTTGGTAAAAGTCTGCATGGGGACGGGAGCACTGGCCTTGCCCTA CGCTTTCTTGAGCGGCGGGTTGGTGTGGAGTGCATTGGGCATTGTCTTGA TGGCCCAATGGAATTATTTTGCCATTCAAAGACTGTTAGCATGCAAGGAG CTGTTGGACTCGGTGGCGACGGGGGCGGAGGATGTGGAGGCGAATAATGT GTATGCGTTTATTGCATTGAAGTCTCTGGGGCGACCGGGGAAGCTCCTTG TTCACGTGACCATGGGCATCACTTTCATCGGATGCGGTGTCTCGTACTTA ATTGCTGCGAGCGATTTATTAGAATCCACTCCTCTTAGCTTGCTATTCGT GGGGGCGCCAATCTGGACGCGTTTCTGTAATACACTGCTGTGTTTACTTG TGGTCCTCCCCTTGTCGTGTACCAAGTCCCTCTCCTTCCTTTCCTACACC TCGCTGTTTGGAGTGATTGCCTTATTGCTCTCTTTTGCCACCATCATAGC GCTTGGGATCAACAACACCCCTCCTGCCGCCACCGCTGCCGCTGCTGCTG CTGCTGCGGCAACTGGGGAGCTACCAACTAAGTGGGCACGTGCCTTTTCT ACAGATGCTCAAGGCCTCTCCAGGTTCTTTGGTATCACTTGCTTTTCTTT CGGGATTCCTCCGCTACTCTTCCCGATTCAGGGAAGCATGGATCGGCCGG AGTTTTTGGGGTCAGCCGTTAGGTTGGCGTTGGTGAGCGTGTCTGCTGCA TACATTCTCATCGCAGAGGCGACAGTTATGTTGTATGATTTTGCCATCCC CCCCAACATATTGTCGGTCCTGCCGGACTCGGATTTAGCCACGTTTGTCC GGCTTTTGATGGTGATGGTATGTTTGCTCACCTATCCGTTGGCCATCGTC CCCCTGTGTGAAAATGTGCAAAACGCCCTGGAAGGTCCACGTGTCTCGAG GATATACCGTTGGGATTCTCTCCAACGTGGGTCAAGTCAATACGAGGAAC GAGAAACATCCGGCTTCAATCACCGTGCTTCTTCCGCATCCCTCCAAGAT CAAGAAAATGGCGGCACAGATACTACGGCACAGGGTGTCTCCCCTCTTTC TCTGCTGCAAGGGGGATGCAATGGGCTAACCCACATGCCACGGTACCAGC AAAGACGCTCTGACGCCGAATCTGTGTGGTCGGCAAAACGGCTGCTGTTA CGTACTGGTATTGTATTTGCCACCGCAGTTCTCTCGACAGTGGTGCCGTG TTTTGGGGTGGTGGTGTCGTTGATGGGTGCGTTTTCGGTGGCGATATTGA GTTTTGTGTTGCCTCCCCTTTTCCATCTAACGCTGTTCAAGGCCAGGTTG TTAAGGACGGAGGCGCTGTGGGACGCGGGCATGTTTCTGTTGGGGCTCTT GGCGTGCGCGTGTGCGACGAGCTTGACGGCGAAAAGTAGCTTGGGGCCGA TCGCGCATTCGCATCGGTGCCCTGGGTAA back to topprotein sequence of NO09G01590.1 >NO09G01590.1-protein ID=NO09G01590.1-protein|Name=NO09G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=593bp MPRDEVVASSTPPPPPQSKPRNYGSLDSRLSLSSSADILPTRSRSGSSLP PHTCEHGLASHSPLFSSYALVLRHRESSGESLSPLCPRKNEEAAGSQGAY FTLVKVCMGTGALALPYAFLSGGLVWSALGIVLMAQWNYFAIQRLLACKE LLDSVATGAEDVEANNVYAFIALKSLGRPGKLLVHVTMGITFIGCGVSYL IAASDLLESTPLSLLFVGAPIWTRFCNTLLCLLVVLPLSCTKSLSFLSYT SLFGVIALLLSFATIIALGINNTPPAATAAAAAAAAATGELPTKWARAFS TDAQGLSRFFGITCFSFGIPPLLFPIQGSMDRPEFLGSAVRLALVSVSAA YILIAEATVMLYDFAIPPNILSVLPDSDLATFVRLLMVMVCLLTYPLAIV PLCENVQNALEGPRVSRIYRWDSLQRGSSQYEERETSGFNHRASSASLQD QENGGTDTTAQGVSPLSLLQGGCNGLTHMPRYQQRRSDAESVWSAKRLLL RTGIVFATAVLSTVVPCFGVVVSLMGAFSVAILSFVLPPLFHLTLFKARL LRTEALWDAGMFLLGLLACACATSLTAKSSLGPIAHSHRCPG* back to topmRNA from alignment at chr9:501800..503578+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G01590.1 ID=NO09G01590.1|Name=NO09G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1779bp|location=Sequence derived from alignment at chr9:501800..503578+ (Nannochloropsis oceanica) ATGCCGCGCGACGAAGTCGTGGCCTCGTCCACACCACCACCACCACCACA
ATCAAAGCCGCGAAATTACGGGAGTCTAGATTCCAGGCTCTCCTTATCCT
CTTCTGCGGATATACTCCCGACCCGCTCTCGATCAGGCAGCAGCTTGCCT
CCCCATACATGCGAGCACGGCCTGGCTTCGCACTCCCCCCTCTTCTCCTC
TTACGCACTCGTACTACGACATCGGGAAAGCAGCGGTGAGTCCTTGTCCC
CCCTGTGTCCACGCAAAAATGAAGAAGCGGCGGGTTCACAAGGCGCTTAC
TTTACCTTGGTAAAAGTCTGCATGGGGACGGGAGCACTGGCCTTGCCCTA
CGCTTTCTTGAGCGGCGGGTTGGTGTGGAGTGCATTGGGCATTGTCTTGA
TGGCCCAATGGAATTATTTTGCCATTCAAAGACTGTTAGCATGCAAGGAG
CTGTTGGACTCGGTGGCGACGGGGGCGGAGGATGTGGAGGCGAATAATGT
GTATGCGTTTATTGCATTGAAGTCTCTGGGGCGACCGGGGAAGCTCCTTG
TTCACGTGACCATGGGCATCACTTTCATCGGATGCGGTGTCTCGTACTTA
ATTGCTGCGAGCGATTTATTAGAATCCACTCCTCTTAGCTTGCTATTCGT
GGGGGCGCCAATCTGGACGCGTTTCTGTAATACACTGCTGTGTTTACTTG
TGGTCCTCCCCTTGTCGTGTACCAAGTCCCTCTCCTTCCTTTCCTACACC
TCGCTGTTTGGAGTGATTGCCTTATTGCTCTCTTTTGCCACCATCATAGC
GCTTGGGATCAACAACACCCCTCCTGCCGCCACCGCTGCCGCTGCTGCTG
CTGCTGCGGCAACTGGGGAGCTACCAACTAAGTGGGCACGTGCCTTTTCT
ACAGATGCTCAAGGCCTCTCCAGGTTCTTTGGTATCACTTGCTTTTCTTT
CGGGATTCCTCCGCTACTCTTCCCGATTCAGGGAAGCATGGATCGGCCGG
AGTTTTTGGGGTCAGCCGTTAGGTTGGCGTTGGTGAGCGTGTCTGCTGCA
TACATTCTCATCGCAGAGGCGACAGTTATGTTGTATGATTTTGCCATCCC
CCCCAACATATTGTCGGTCCTGCCGGACTCGGATTTAGCCACGTTTGTCC
GGCTTTTGATGGTGATGGTATGTTTGCTCACCTATCCGTTGGCCATCGTC
CCCCTGTGTGAAAATGTGCAAAACGCCCTGGAAGGTCCACGTGTCTCGAG
GATATACCGTTGGGATTCTCTCCAACGTGGGTCAAGTCAATACGAGGAAC
GAGAAACATCCGGCTTCAATCACCGTGCTTCTTCCGCATCCCTCCAAGAT
CAAGAAAATGGCGGCACAGATACTACGGCACAGGGTGTCTCCCCTCTTTC
TCTGCTGCAAGGGGGATGCAATGGGCTAACCCACATGCCACGGTACCAGC
AAAGACGCTCTGACGCCGAATCTGTGTGGTCGGCAAAACGGCTGCTGTTA
CGTACTGGTATTGTATTTGCCACCGCAGTTCTCTCGACAGTGGTGCCGTG
TTTTGGGGTGGTGGTGTCGTTGATGGGTGCGTTTTCGGTGGCGATATTGA
GTTTTGTGTTGCCTCCCCTTTTCCATCTAACGCTGTTCAAGGCCAGGTTG
TTAAGGACGGAGGCGCTGTGGGACGCGGGCATGTTTCTGTTGGGGCTCTT
GGCGTGCGCGTGTGCGACGAGCTTGACGGCGAAAAGTAGCTTGGGGCCGA
TCGCGCATTCGCATCGGTGCCCTGGGTAA back to topCoding sequence (CDS) from alignment at chr9:501800..503578+ >NO09G01590.1 ID=NO09G01590.1|Name=NO09G01590.1|organism=Nannochloropsis oceanica|type=CDS|length=1779bp|location=Sequence derived from alignment at chr9:501800..503578+ (Nannochloropsis oceanica) ATGCCGCGCGACGAAGTCGTGGCCTCGTCCACACCACCACCACCACCACA ATCAAAGCCGCGAAATTACGGGAGTCTAGATTCCAGGCTCTCCTTATCCT CTTCTGCGGATATACTCCCGACCCGCTCTCGATCAGGCAGCAGCTTGCCT CCCCATACATGCGAGCACGGCCTGGCTTCGCACTCCCCCCTCTTCTCCTC TTACGCACTCGTACTACGACATCGGGAAAGCAGCGGTGAGTCCTTGTCCC CCCTGTGTCCACGCAAAAATGAAGAAGCGGCGGGTTCACAAGGCGCTTAC TTTACCTTGGTAAAAGTCTGCATGGGGACGGGAGCACTGGCCTTGCCCTA CGCTTTCTTGAGCGGCGGGTTGGTGTGGAGTGCATTGGGCATTGTCTTGA TGGCCCAATGGAATTATTTTGCCATTCAAAGACTGTTAGCATGCAAGGAG CTGTTGGACTCGGTGGCGACGGGGGCGGAGGATGTGGAGGCGAATAATGT GTATGCGTTTATTGCATTGAAGTCTCTGGGGCGACCGGGGAAGCTCCTTG TTCACGTGACCATGGGCATCACTTTCATCGGATGCGGTGTCTCGTACTTA ATTGCTGCGAGCGATTTATTAGAATCCACTCCTCTTAGCTTGCTATTCGT GGGGGCGCCAATCTGGACGCGTTTCTGTAATACACTGCTGTGTTTACTTG TGGTCCTCCCCTTGTCGTGTACCAAGTCCCTCTCCTTCCTTTCCTACACC TCGCTGTTTGGAGTGATTGCCTTATTGCTCTCTTTTGCCACCATCATAGC GCTTGGGATCAACAACACCCCTCCTGCCGCCACCGCTGCCGCTGCTGCTG CTGCTGCGGCAACTGGGGAGCTACCAACTAAGTGGGCACGTGCCTTTTCT ACAGATGCTCAAGGCCTCTCCAGGTTCTTTGGTATCACTTGCTTTTCTTT CGGGATTCCTCCGCTACTCTTCCCGATTCAGGGAAGCATGGATCGGCCGG AGTTTTTGGGGTCAGCCGTTAGGTTGGCGTTGGTGAGCGTGTCTGCTGCA TACATTCTCATCGCAGAGGCGACAGTTATGTTGTATGATTTTGCCATCCC CCCCAACATATTGTCGGTCCTGCCGGACTCGGATTTAGCCACGTTTGTCC GGCTTTTGATGGTGATGGTATGTTTGCTCACCTATCCGTTGGCCATCGTC CCCCTGTGTGAAAATGTGCAAAACGCCCTGGAAGGTCCACGTGTCTCGAG GATATACCGTTGGGATTCTCTCCAACGTGGGTCAAGTCAATACGAGGAAC GAGAAACATCCGGCTTCAATCACCGTGCTTCTTCCGCATCCCTCCAAGAT CAAGAAAATGGCGGCACAGATACTACGGCACAGGGTGTCTCCCCTCTTTC TCTGCTGCAAGGGGGATGCAATGGGCTAACCCACATGCCACGGTACCAGC AAAGACGCTCTGACGCCGAATCTGTGTGGTCGGCAAAACGGCTGCTGTTA CGTACTGGTATTGTATTTGCCACCGCAGTTCTCTCGACAGTGGTGCCGTG TTTTGGGGTGGTGGTGTCGTTGATGGGTGCGTTTTCGGTGGCGATATTGA GTTTTGTGTTGCCTCCCCTTTTCCATCTAACGCTGTTCAAGGCCAGGTTG TTAAGGACGGAGGCGCTGTGGGACGCGGGCATGTTTCTGTTGGGGCTCTT GGCGTGCGCGTGTGCGACGAGCTTGACGGCGAAAAGTAGCTTGGGGCCGA TCGCGCATTCGCATCGGTGCCCTGGGTAA back to top
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