NO09G01550.1, NO09G01550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01550.1
Unique NameNO09G01550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1509
Alignment locationchr9:490837..492345 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:490837..492345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G01550.1 vs.
Match: EWM27642.1 (cysteine desulfurase [Nannochloropsis gaditana])

HSP 1 Score: 878.6 bits (2269), Expect = 9.000e-252
Identity = 441/502 (87.85%), Postives = 467/502 (93.03%), Query Frame = 0
Query:    1 MQRLLLVSRRNLLLPATTAARGSTPMPIVAAGAQRGLASAVSDKDEGVNAPTTFSHEKMARDKRYKAQSEIPKQVLESMHKSEVHSPGFSIRGEAREGRAAYLDFQATTPMDPRVVDAMLPFMTGSFGNPHSRTHAYGWEAEAAVEKAREQVASILGASSKEIVFTSGATESNNAAIKGVAHFYKEKKNHIITTQIEHKCVLDSCRVLEQEGFKVTYLPVQKNGLLDLQVLKDAITPQTSLVSVMAVNNEIGVLQPMREIGMICRDKKVFFHSDLAQMVGKMPIDVDEMKVDLASLSSHKVYGPKGVGAMYVRRRPRVRLEPIMSGGGQERGLRSGTLPHFLCVGFGAACEIAKKELPHDEAWIHFLANRLYDGIKKNIPHVILNGDEHARYEGCLNISFAYVEGESLLMALKNIAVSSGSACTSASLEPSYVLRAIGVGEDLAHTSIRFGIGRFTTVEEVDFTIDILSKNVARLREMSPLYELVLEGVDLSTIQWTQDAHH 503
            MQRL+L  RR  +L   T    S        GA+RGLASAVSDKD   NAPTTFSHEKMARDKRYK Q+E+P+QVLESM   EVHSPGFSI+GEAREGRAAYLDFQATTPMDPRVVD MLP+MTGSFGNPHSRTH YGWEAEAAVEKAREQVASILGAS+KEIVFTSGATESNNAAIKGVAHFY EKK HIITTQIEHKCVLDSCRVLEQEG++VTYLPVQKNGLLDLQVLKDAITPQTSLVSVMAVNNEIGVLQPMREIG +CR++KVFFHSDLAQMVGKMPIDVDEMK+DLASLSSHKVYGPKGVGA+YVRRRPRVRLEPIMSGGGQERGLRSGTLPHFLCVGFGAAC+IAKKELPHDEAW+HFLA RLYDGI+KNIPHV+LNGD  +RYEGCLN+SFAYVEGESLLMALKNIAVSSGSACTSASLEPSYVLRAIGVGEDLAHTSIRFGIGRFTTVEEVDFTID+LS+NVARLREMSPL+ELV EGVDL+TIQWTQDAHH
Sbjct:   37 MQRLVLAFRRGTMLSTNTRTSMS--------GARRGLASAVSDKDGVENAPTTFSHEKMARDKRYKPQNEVPRQVLESMLAKEVHSPGFSIKGEAREGRAAYLDFQATTPMDPRVVDEMLPYMTGSFGNPHSRTHTYGWEAEAAVEKAREQVASILGASAKEIVFTSGATESNNAAIKGVAHFYGEKKKHIITTQIEHKCVLDSCRVLEQEGYQVTYLPVQKNGLLDLQVLKDAITPQTSLVSVMAVNNEIGVLQPMREIGQMCRERKVFFHSDLAQMVGKMPIDVDEMKIDLASLSSHKVYGPKGVGALYVRRRPRVRLEPIMSGGGQERGLRSGTLPHFLCVGFGAACDIAKKELPHDEAWVHFLATRLYDGIRKNIPHVVLNGDLDSRYEGCLNVSFAYVEGESLLMALKNIAVSSGSACTSASLEPSYVLRAIGVGEDLAHTSIRFGIGRFTTVEEVDFTIDLLSRNVARLREMSPLWELVQEGVDLNTIQWTQDAHH 530          
The following BLAST results are available for this feature:
BLAST of NO09G01550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27642.19.000e-25287.85cysteine desulfurase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01550NO09G01550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01550.1NO09G01550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01550.1.cds1NO09G01550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01550.1 ID=NO09G01550.1|Name=NO09G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp
ATGCAGCGTCTCTTGCTCGTCTCCCGGCGGAATCTGCTCCTACCGGCGAC
CACCGCTGCACGTGGATCCACCCCGATGCCGATTGTGGCAGCTGGCGCTC
AACGGGGCCTGGCCTCCGCTGTCTCGGATAAGGACGAAGGAGTGAATGCC
CCCACCACCTTTTCGCATGAGAAAATGGCCCGCGACAAGCGCTATAAAGC
TCAGTCCGAGATCCCCAAGCAGGTATTGGAGTCCATGCATAAGAGTGAAG
TGCATTCTCCCGGGTTTTCCATCAGGGGAGAGGCGCGGGAGGGCCGAGCG
GCTTACCTGGACTTCCAAGCTACCACTCCTATGGACCCCCGCGTGGTGGA
CGCCATGCTGCCCTTTATGACAGGGAGCTTCGGTAACCCTCATTCGAGGA
CGCACGCGTATGGATGGGAGGCGGAGGCAGCAGTGGAGAAAGCTAGGGAG
CAGGTGGCGTCGATTCTGGGGGCCTCTTCCAAGGAGATTGTGTTTACGTC
GGGGGCGACCGAGAGTAACAATGCCGCGATTAAGGGCGTGGCACACTTTT
ACAAGGAGAAGAAGAATCATATCATTACCACACAGATTGAGCACAAATGT
GTCTTGGATTCATGCCGGGTGCTAGAACAAGAAGGCTTCAAGGTGACATA
TTTGCCGGTGCAGAAAAACGGGCTGTTGGACCTACAGGTGCTCAAGGACG
CAATCACGCCGCAGACGTCTTTGGTCTCGGTGATGGCTGTCAACAATGAG
ATTGGGGTGTTGCAGCCCATGAGGGAGATTGGGATGATTTGTCGGGACAA
AAAGGTATTTTTCCATTCGGACCTGGCCCAAATGGTGGGGAAAATGCCGA
TAGACGTGGATGAGATGAAGGTTGATTTGGCTTCTTTGTCTAGTCATAAG
GTGTACGGGCCTAAGGGTGTGGGGGCTATGTATGTGCGCCGTCGTCCACG
TGTAAGGCTGGAGCCAATCATGTCGGGAGGGGGGCAGGAAAGGGGGTTGA
GGAGTGGGACTTTGCCTCATTTTCTGTGTGTGGGGTTCGGGGCTGCGTGT
GAGATTGCGAAGAAGGAGCTGCCGCATGACGAGGCGTGGATTCACTTCTT
AGCCAATAGGTTGTATGACGGGATTAAGAAGAACATCCCGCATGTGATTT
TGAATGGGGATGAGCATGCAAGGTACGAAGGGTGCTTGAACATTTCGTTT
GCCTATGTGGAGGGGGAGTCCCTTTTAATGGCCTTGAAAAATATTGCCGT
CTCGAGTGGCTCAGCATGCACCTCAGCGTCGCTGGAGCCGTCGTACGTGC
TGCGGGCCATCGGGGTGGGGGAGGACCTGGCCCATACGTCGATCCGATTC
GGGATAGGGCGGTTCACGACAGTGGAGGAGGTGGACTTCACGATCGATAT
TTTGAGCAAGAACGTAGCGCGCTTGCGGGAGATGTCTCCATTGTATGAGC
TGGTCTTGGAGGGCGTCGACCTGAGCACGATTCAGTGGACACAGGATGCG
CACCACTAG
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protein sequence of NO09G01550.1

>NO09G01550.1-protein ID=NO09G01550.1-protein|Name=NO09G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MQRLLLVSRRNLLLPATTAARGSTPMPIVAAGAQRGLASAVSDKDEGVNA
PTTFSHEKMARDKRYKAQSEIPKQVLESMHKSEVHSPGFSIRGEAREGRA
AYLDFQATTPMDPRVVDAMLPFMTGSFGNPHSRTHAYGWEAEAAVEKARE
QVASILGASSKEIVFTSGATESNNAAIKGVAHFYKEKKNHIITTQIEHKC
VLDSCRVLEQEGFKVTYLPVQKNGLLDLQVLKDAITPQTSLVSVMAVNNE
IGVLQPMREIGMICRDKKVFFHSDLAQMVGKMPIDVDEMKVDLASLSSHK
VYGPKGVGAMYVRRRPRVRLEPIMSGGGQERGLRSGTLPHFLCVGFGAAC
EIAKKELPHDEAWIHFLANRLYDGIKKNIPHVILNGDEHARYEGCLNISF
AYVEGESLLMALKNIAVSSGSACTSASLEPSYVLRAIGVGEDLAHTSIRF
GIGRFTTVEEVDFTIDILSKNVARLREMSPLYELVLEGVDLSTIQWTQDA
HH*
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mRNA from alignment at chr9:490837..492345+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01550.1 ID=NO09G01550.1|Name=NO09G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp|location=Sequence derived from alignment at chr9:490837..492345+ (Nannochloropsis oceanica)
ATGCAGCGTCTCTTGCTCGTCTCCCGGCGGAATCTGCTCCTACCGGCGAC CACCGCTGCACGTGGATCCACCCCGATGCCGATTGTGGCAGCTGGCGCTC AACGGGGCCTGGCCTCCGCTGTCTCGGATAAGGACGAAGGAGTGAATGCC CCCACCACCTTTTCGCATGAGAAAATGGCCCGCGACAAGCGCTATAAAGC TCAGTCCGAGATCCCCAAGCAGGTATTGGAGTCCATGCATAAGAGTGAAG TGCATTCTCCCGGGTTTTCCATCAGGGGAGAGGCGCGGGAGGGCCGAGCG GCTTACCTGGACTTCCAAGCTACCACTCCTATGGACCCCCGCGTGGTGGA CGCCATGCTGCCCTTTATGACAGGGAGCTTCGGTAACCCTCATTCGAGGA CGCACGCGTATGGATGGGAGGCGGAGGCAGCAGTGGAGAAAGCTAGGGAG CAGGTGGCGTCGATTCTGGGGGCCTCTTCCAAGGAGATTGTGTTTACGTC GGGGGCGACCGAGAGTAACAATGCCGCGATTAAGGGCGTGGCACACTTTT ACAAGGAGAAGAAGAATCATATCATTACCACACAGATTGAGCACAAATGT GTCTTGGATTCATGCCGGGTGCTAGAACAAGAAGGCTTCAAGGTGACATA TTTGCCGGTGCAGAAAAACGGGCTGTTGGACCTACAGGTGCTCAAGGACG CAATCACGCCGCAGACGTCTTTGGTCTCGGTGATGGCTGTCAACAATGAG ATTGGGGTGTTGCAGCCCATGAGGGAGATTGGGATGATTTGTCGGGACAA AAAGGTATTTTTCCATTCGGACCTGGCCCAAATGGTGGGGAAAATGCCGA TAGACGTGGATGAGATGAAGGTTGATTTGGCTTCTTTGTCTAGTCATAAG GTGTACGGGCCTAAGGGTGTGGGGGCTATGTATGTGCGCCGTCGTCCACG TGTAAGGCTGGAGCCAATCATGTCGGGAGGGGGGCAGGAAAGGGGGTTGA GGAGTGGGACTTTGCCTCATTTTCTGTGTGTGGGGTTCGGGGCTGCGTGT GAGATTGCGAAGAAGGAGCTGCCGCATGACGAGGCGTGGATTCACTTCTT AGCCAATAGGTTGTATGACGGGATTAAGAAGAACATCCCGCATGTGATTT TGAATGGGGATGAGCATGCAAGGTACGAAGGGTGCTTGAACATTTCGTTT GCCTATGTGGAGGGGGAGTCCCTTTTAATGGCCTTGAAAAATATTGCCGT CTCGAGTGGCTCAGCATGCACCTCAGCGTCGCTGGAGCCGTCGTACGTGC TGCGGGCCATCGGGGTGGGGGAGGACCTGGCCCATACGTCGATCCGATTC GGGATAGGGCGGTTCACGACAGTGGAGGAGGTGGACTTCACGATCGATAT TTTGAGCAAGAACGTAGCGCGCTTGCGGGAGATGTCTCCATTGTATGAGC TGGTCTTGGAGGGCGTCGACCTGAGCACGATTCAGTGGACACAGGATGCG CACCACTAG
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Coding sequence (CDS) from alignment at chr9:490837..492345+

>NO09G01550.1 ID=NO09G01550.1|Name=NO09G01550.1|organism=Nannochloropsis oceanica|type=CDS|length=1509bp|location=Sequence derived from alignment at chr9:490837..492345+ (Nannochloropsis oceanica)
ATGCAGCGTCTCTTGCTCGTCTCCCGGCGGAATCTGCTCCTACCGGCGAC
CACCGCTGCACGTGGATCCACCCCGATGCCGATTGTGGCAGCTGGCGCTC
AACGGGGCCTGGCCTCCGCTGTCTCGGATAAGGACGAAGGAGTGAATGCC
CCCACCACCTTTTCGCATGAGAAAATGGCCCGCGACAAGCGCTATAAAGC
TCAGTCCGAGATCCCCAAGCAGGTATTGGAGTCCATGCATAAGAGTGAAG
TGCATTCTCCCGGGTTTTCCATCAGGGGAGAGGCGCGGGAGGGCCGAGCG
GCTTACCTGGACTTCCAAGCTACCACTCCTATGGACCCCCGCGTGGTGGA
CGCCATGCTGCCCTTTATGACAGGGAGCTTCGGTAACCCTCATTCGAGGA
CGCACGCGTATGGATGGGAGGCGGAGGCAGCAGTGGAGAAAGCTAGGGAG
CAGGTGGCGTCGATTCTGGGGGCCTCTTCCAAGGAGATTGTGTTTACGTC
GGGGGCGACCGAGAGTAACAATGCCGCGATTAAGGGCGTGGCACACTTTT
ACAAGGAGAAGAAGAATCATATCATTACCACACAGATTGAGCACAAATGT
GTCTTGGATTCATGCCGGGTGCTAGAACAAGAAGGCTTCAAGGTGACATA
TTTGCCGGTGCAGAAAAACGGGCTGTTGGACCTACAGGTGCTCAAGGACG
CAATCACGCCGCAGACGTCTTTGGTCTCGGTGATGGCTGTCAACAATGAG
ATTGGGGTGTTGCAGCCCATGAGGGAGATTGGGATGATTTGTCGGGACAA
AAAGGTATTTTTCCATTCGGACCTGGCCCAAATGGTGGGGAAAATGCCGA
TAGACGTGGATGAGATGAAGGTTGATTTGGCTTCTTTGTCTAGTCATAAG
GTGTACGGGCCTAAGGGTGTGGGGGCTATGTATGTGCGCCGTCGTCCACG
TGTAAGGCTGGAGCCAATCATGTCGGGAGGGGGGCAGGAAAGGGGGTTGA
GGAGTGGGACTTTGCCTCATTTTCTGTGTGTGGGGTTCGGGGCTGCGTGT
GAGATTGCGAAGAAGGAGCTGCCGCATGACGAGGCGTGGATTCACTTCTT
AGCCAATAGGTTGTATGACGGGATTAAGAAGAACATCCCGCATGTGATTT
TGAATGGGGATGAGCATGCAAGGTACGAAGGGTGCTTGAACATTTCGTTT
GCCTATGTGGAGGGGGAGTCCCTTTTAATGGCCTTGAAAAATATTGCCGT
CTCGAGTGGCTCAGCATGCACCTCAGCGTCGCTGGAGCCGTCGTACGTGC
TGCGGGCCATCGGGGTGGGGGAGGACCTGGCCCATACGTCGATCCGATTC
GGGATAGGGCGGTTCACGACAGTGGAGGAGGTGGACTTCACGATCGATAT
TTTGAGCAAGAACGTAGCGCGCTTGCGGGAGATGTCTCCATTGTATGAGC
TGGTCTTGGAGGGCGTCGACCTGAGCACGATTCAGTGGACACAGGATGCG
CACCACTAG
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Synonyms
Publications