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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:490837..492345 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G01550.1 vs.
Match: EWM27642.1 (cysteine desulfurase [Nannochloropsis gaditana]) HSP 1 Score: 878.6 bits (2269), Expect = 9.000e-252 Identity = 441/502 (87.85%), Postives = 467/502 (93.03%), Query Frame = 0
Query: 1 MQRLLLVSRRNLLLPATTAARGSTPMPIVAAGAQRGLASAVSDKDEGVNAPTTFSHEKMARDKRYKAQSEIPKQVLESMHKSEVHSPGFSIRGEAREGRAAYLDFQATTPMDPRVVDAMLPFMTGSFGNPHSRTHAYGWEAEAAVEKAREQVASILGASSKEIVFTSGATESNNAAIKGVAHFYKEKKNHIITTQIEHKCVLDSCRVLEQEGFKVTYLPVQKNGLLDLQVLKDAITPQTSLVSVMAVNNEIGVLQPMREIGMICRDKKVFFHSDLAQMVGKMPIDVDEMKVDLASLSSHKVYGPKGVGAMYVRRRPRVRLEPIMSGGGQERGLRSGTLPHFLCVGFGAACEIAKKELPHDEAWIHFLANRLYDGIKKNIPHVILNGDEHARYEGCLNISFAYVEGESLLMALKNIAVSSGSACTSASLEPSYVLRAIGVGEDLAHTSIRFGIGRFTTVEEVDFTIDILSKNVARLREMSPLYELVLEGVDLSTIQWTQDAHH 503
MQRL+L RR +L T S GA+RGLASAVSDKD NAPTTFSHEKMARDKRYK Q+E+P+QVLESM EVHSPGFSI+GEAREGRAAYLDFQATTPMDPRVVD MLP+MTGSFGNPHSRTH YGWEAEAAVEKAREQVASILGAS+KEIVFTSGATESNNAAIKGVAHFY EKK HIITTQIEHKCVLDSCRVLEQEG++VTYLPVQKNGLLDLQVLKDAITPQTSLVSVMAVNNEIGVLQPMREIG +CR++KVFFHSDLAQMVGKMPIDVDEMK+DLASLSSHKVYGPKGVGA+YVRRRPRVRLEPIMSGGGQERGLRSGTLPHFLCVGFGAAC+IAKKELPHDEAW+HFLA RLYDGI+KNIPHV+LNGD +RYEGCLN+SFAYVEGESLLMALKNIAVSSGSACTSASLEPSYVLRAIGVGEDLAHTSIRFGIGRFTTVEEVDFTID+LS+NVARLREMSPL+ELV EGVDL+TIQWTQDAHH
Sbjct: 37 MQRLVLAFRRGTMLSTNTRTSMS--------GARRGLASAVSDKDGVENAPTTFSHEKMARDKRYKPQNEVPRQVLESMLAKEVHSPGFSIKGEAREGRAAYLDFQATTPMDPRVVDEMLPYMTGSFGNPHSRTHTYGWEAEAAVEKAREQVASILGASAKEIVFTSGATESNNAAIKGVAHFYGEKKKHIITTQIEHKCVLDSCRVLEQEGYQVTYLPVQKNGLLDLQVLKDAITPQTSLVSVMAVNNEIGVLQPMREIGQMCRERKVFFHSDLAQMVGKMPIDVDEMKIDLASLSSHKVYGPKGVGALYVRRRPRVRLEPIMSGGGQERGLRSGTLPHFLCVGFGAACDIAKKELPHDEAWVHFLATRLYDGIRKNIPHVVLNGDLDSRYEGCLNVSFAYVEGESLLMALKNIAVSSGSACTSASLEPSYVLRAIGVGEDLAHTSIRFGIGRFTTVEEVDFTIDLLSRNVARLREMSPLWELVQEGVDLNTIQWTQDAHH 530
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G01550.1 ID=NO09G01550.1|Name=NO09G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp ATGCAGCGTCTCTTGCTCGTCTCCCGGCGGAATCTGCTCCTACCGGCGAC CACCGCTGCACGTGGATCCACCCCGATGCCGATTGTGGCAGCTGGCGCTC AACGGGGCCTGGCCTCCGCTGTCTCGGATAAGGACGAAGGAGTGAATGCC CCCACCACCTTTTCGCATGAGAAAATGGCCCGCGACAAGCGCTATAAAGC TCAGTCCGAGATCCCCAAGCAGGTATTGGAGTCCATGCATAAGAGTGAAG TGCATTCTCCCGGGTTTTCCATCAGGGGAGAGGCGCGGGAGGGCCGAGCG GCTTACCTGGACTTCCAAGCTACCACTCCTATGGACCCCCGCGTGGTGGA CGCCATGCTGCCCTTTATGACAGGGAGCTTCGGTAACCCTCATTCGAGGA CGCACGCGTATGGATGGGAGGCGGAGGCAGCAGTGGAGAAAGCTAGGGAG CAGGTGGCGTCGATTCTGGGGGCCTCTTCCAAGGAGATTGTGTTTACGTC GGGGGCGACCGAGAGTAACAATGCCGCGATTAAGGGCGTGGCACACTTTT ACAAGGAGAAGAAGAATCATATCATTACCACACAGATTGAGCACAAATGT GTCTTGGATTCATGCCGGGTGCTAGAACAAGAAGGCTTCAAGGTGACATA TTTGCCGGTGCAGAAAAACGGGCTGTTGGACCTACAGGTGCTCAAGGACG CAATCACGCCGCAGACGTCTTTGGTCTCGGTGATGGCTGTCAACAATGAG ATTGGGGTGTTGCAGCCCATGAGGGAGATTGGGATGATTTGTCGGGACAA AAAGGTATTTTTCCATTCGGACCTGGCCCAAATGGTGGGGAAAATGCCGA TAGACGTGGATGAGATGAAGGTTGATTTGGCTTCTTTGTCTAGTCATAAG GTGTACGGGCCTAAGGGTGTGGGGGCTATGTATGTGCGCCGTCGTCCACG TGTAAGGCTGGAGCCAATCATGTCGGGAGGGGGGCAGGAAAGGGGGTTGA GGAGTGGGACTTTGCCTCATTTTCTGTGTGTGGGGTTCGGGGCTGCGTGT GAGATTGCGAAGAAGGAGCTGCCGCATGACGAGGCGTGGATTCACTTCTT AGCCAATAGGTTGTATGACGGGATTAAGAAGAACATCCCGCATGTGATTT TGAATGGGGATGAGCATGCAAGGTACGAAGGGTGCTTGAACATTTCGTTT GCCTATGTGGAGGGGGAGTCCCTTTTAATGGCCTTGAAAAATATTGCCGT CTCGAGTGGCTCAGCATGCACCTCAGCGTCGCTGGAGCCGTCGTACGTGC TGCGGGCCATCGGGGTGGGGGAGGACCTGGCCCATACGTCGATCCGATTC GGGATAGGGCGGTTCACGACAGTGGAGGAGGTGGACTTCACGATCGATAT TTTGAGCAAGAACGTAGCGCGCTTGCGGGAGATGTCTCCATTGTATGAGC TGGTCTTGGAGGGCGTCGACCTGAGCACGATTCAGTGGACACAGGATGCG CACCACTAG back to topprotein sequence of NO09G01550.1 >NO09G01550.1-protein ID=NO09G01550.1-protein|Name=NO09G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp MQRLLLVSRRNLLLPATTAARGSTPMPIVAAGAQRGLASAVSDKDEGVNA PTTFSHEKMARDKRYKAQSEIPKQVLESMHKSEVHSPGFSIRGEAREGRA AYLDFQATTPMDPRVVDAMLPFMTGSFGNPHSRTHAYGWEAEAAVEKARE QVASILGASSKEIVFTSGATESNNAAIKGVAHFYKEKKNHIITTQIEHKC VLDSCRVLEQEGFKVTYLPVQKNGLLDLQVLKDAITPQTSLVSVMAVNNE IGVLQPMREIGMICRDKKVFFHSDLAQMVGKMPIDVDEMKVDLASLSSHK VYGPKGVGAMYVRRRPRVRLEPIMSGGGQERGLRSGTLPHFLCVGFGAAC EIAKKELPHDEAWIHFLANRLYDGIKKNIPHVILNGDEHARYEGCLNISF AYVEGESLLMALKNIAVSSGSACTSASLEPSYVLRAIGVGEDLAHTSIRF GIGRFTTVEEVDFTIDILSKNVARLREMSPLYELVLEGVDLSTIQWTQDA HH* back to topmRNA from alignment at chr9:490837..492345+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G01550.1 ID=NO09G01550.1|Name=NO09G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp|location=Sequence derived from alignment at chr9:490837..492345+ (Nannochloropsis oceanica) ATGCAGCGTCTCTTGCTCGTCTCCCGGCGGAATCTGCTCCTACCGGCGAC
CACCGCTGCACGTGGATCCACCCCGATGCCGATTGTGGCAGCTGGCGCTC
AACGGGGCCTGGCCTCCGCTGTCTCGGATAAGGACGAAGGAGTGAATGCC
CCCACCACCTTTTCGCATGAGAAAATGGCCCGCGACAAGCGCTATAAAGC
TCAGTCCGAGATCCCCAAGCAGGTATTGGAGTCCATGCATAAGAGTGAAG
TGCATTCTCCCGGGTTTTCCATCAGGGGAGAGGCGCGGGAGGGCCGAGCG
GCTTACCTGGACTTCCAAGCTACCACTCCTATGGACCCCCGCGTGGTGGA
CGCCATGCTGCCCTTTATGACAGGGAGCTTCGGTAACCCTCATTCGAGGA
CGCACGCGTATGGATGGGAGGCGGAGGCAGCAGTGGAGAAAGCTAGGGAG
CAGGTGGCGTCGATTCTGGGGGCCTCTTCCAAGGAGATTGTGTTTACGTC
GGGGGCGACCGAGAGTAACAATGCCGCGATTAAGGGCGTGGCACACTTTT
ACAAGGAGAAGAAGAATCATATCATTACCACACAGATTGAGCACAAATGT
GTCTTGGATTCATGCCGGGTGCTAGAACAAGAAGGCTTCAAGGTGACATA
TTTGCCGGTGCAGAAAAACGGGCTGTTGGACCTACAGGTGCTCAAGGACG
CAATCACGCCGCAGACGTCTTTGGTCTCGGTGATGGCTGTCAACAATGAG
ATTGGGGTGTTGCAGCCCATGAGGGAGATTGGGATGATTTGTCGGGACAA
AAAGGTATTTTTCCATTCGGACCTGGCCCAAATGGTGGGGAAAATGCCGA
TAGACGTGGATGAGATGAAGGTTGATTTGGCTTCTTTGTCTAGTCATAAG
GTGTACGGGCCTAAGGGTGTGGGGGCTATGTATGTGCGCCGTCGTCCACG
TGTAAGGCTGGAGCCAATCATGTCGGGAGGGGGGCAGGAAAGGGGGTTGA
GGAGTGGGACTTTGCCTCATTTTCTGTGTGTGGGGTTCGGGGCTGCGTGT
GAGATTGCGAAGAAGGAGCTGCCGCATGACGAGGCGTGGATTCACTTCTT
AGCCAATAGGTTGTATGACGGGATTAAGAAGAACATCCCGCATGTGATTT
TGAATGGGGATGAGCATGCAAGGTACGAAGGGTGCTTGAACATTTCGTTT
GCCTATGTGGAGGGGGAGTCCCTTTTAATGGCCTTGAAAAATATTGCCGT
CTCGAGTGGCTCAGCATGCACCTCAGCGTCGCTGGAGCCGTCGTACGTGC
TGCGGGCCATCGGGGTGGGGGAGGACCTGGCCCATACGTCGATCCGATTC
GGGATAGGGCGGTTCACGACAGTGGAGGAGGTGGACTTCACGATCGATAT
TTTGAGCAAGAACGTAGCGCGCTTGCGGGAGATGTCTCCATTGTATGAGC
TGGTCTTGGAGGGCGTCGACCTGAGCACGATTCAGTGGACACAGGATGCG
CACCACTAG back to topCoding sequence (CDS) from alignment at chr9:490837..492345+ >NO09G01550.1 ID=NO09G01550.1|Name=NO09G01550.1|organism=Nannochloropsis oceanica|type=CDS|length=1509bp|location=Sequence derived from alignment at chr9:490837..492345+ (Nannochloropsis oceanica) ATGCAGCGTCTCTTGCTCGTCTCCCGGCGGAATCTGCTCCTACCGGCGAC CACCGCTGCACGTGGATCCACCCCGATGCCGATTGTGGCAGCTGGCGCTC AACGGGGCCTGGCCTCCGCTGTCTCGGATAAGGACGAAGGAGTGAATGCC CCCACCACCTTTTCGCATGAGAAAATGGCCCGCGACAAGCGCTATAAAGC TCAGTCCGAGATCCCCAAGCAGGTATTGGAGTCCATGCATAAGAGTGAAG TGCATTCTCCCGGGTTTTCCATCAGGGGAGAGGCGCGGGAGGGCCGAGCG GCTTACCTGGACTTCCAAGCTACCACTCCTATGGACCCCCGCGTGGTGGA CGCCATGCTGCCCTTTATGACAGGGAGCTTCGGTAACCCTCATTCGAGGA CGCACGCGTATGGATGGGAGGCGGAGGCAGCAGTGGAGAAAGCTAGGGAG CAGGTGGCGTCGATTCTGGGGGCCTCTTCCAAGGAGATTGTGTTTACGTC GGGGGCGACCGAGAGTAACAATGCCGCGATTAAGGGCGTGGCACACTTTT ACAAGGAGAAGAAGAATCATATCATTACCACACAGATTGAGCACAAATGT GTCTTGGATTCATGCCGGGTGCTAGAACAAGAAGGCTTCAAGGTGACATA TTTGCCGGTGCAGAAAAACGGGCTGTTGGACCTACAGGTGCTCAAGGACG CAATCACGCCGCAGACGTCTTTGGTCTCGGTGATGGCTGTCAACAATGAG ATTGGGGTGTTGCAGCCCATGAGGGAGATTGGGATGATTTGTCGGGACAA AAAGGTATTTTTCCATTCGGACCTGGCCCAAATGGTGGGGAAAATGCCGA TAGACGTGGATGAGATGAAGGTTGATTTGGCTTCTTTGTCTAGTCATAAG GTGTACGGGCCTAAGGGTGTGGGGGCTATGTATGTGCGCCGTCGTCCACG TGTAAGGCTGGAGCCAATCATGTCGGGAGGGGGGCAGGAAAGGGGGTTGA GGAGTGGGACTTTGCCTCATTTTCTGTGTGTGGGGTTCGGGGCTGCGTGT GAGATTGCGAAGAAGGAGCTGCCGCATGACGAGGCGTGGATTCACTTCTT AGCCAATAGGTTGTATGACGGGATTAAGAAGAACATCCCGCATGTGATTT TGAATGGGGATGAGCATGCAAGGTACGAAGGGTGCTTGAACATTTCGTTT GCCTATGTGGAGGGGGAGTCCCTTTTAATGGCCTTGAAAAATATTGCCGT CTCGAGTGGCTCAGCATGCACCTCAGCGTCGCTGGAGCCGTCGTACGTGC TGCGGGCCATCGGGGTGGGGGAGGACCTGGCCCATACGTCGATCCGATTC GGGATAGGGCGGTTCACGACAGTGGAGGAGGTGGACTTCACGATCGATAT TTTGAGCAAGAACGTAGCGCGCTTGCGGGAGATGTCTCCATTGTATGAGC TGGTCTTGGAGGGCGTCGACCTGAGCACGATTCAGTGGACACAGGATGCG CACCACTAG back to top
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