NO09G01520.1, NO09G01520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01520.1
Unique NameNO09G01520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length945
Alignment locationchr9:481300..482244 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:481300..482244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01520.1 vs.
Match: EWM27643.1 (guanine nucleotide binding protein [Nannochloropsis gaditana])

HSP 1 Score: 642.1 bits (1655), Expect = 8.900e-181
Identity = 297/314 (94.59%), Postives = 305/314 (97.13%), Query Frame = 0 
Query:    1 MGEQLSLRGELKGHAGWVTSIATHADNPNLVLSSSRDKTVMVWNIDGSEDYGQPQRALRGHGHFVSDVIISSDGQFALSSSWDGTLRLWEIKTGKTTRRFVGHSKDVLSVSFSPDNRQIVSGSRDKTVKLWNTLGECKFTITDEGHSEWVSCVRFSPSPTAPVIVSCGWDKRVKVWNLANCKLKQNLIGHSGYLNVVTVSPDGSLCASGGKDGTAMLWDLNEGKRLYSLDAGDIIHSLVFSPNRYWLCAATSQGIKIWDLESKDMVDNLQPKWPVQGKHSLSPQPYCTSLAWSADGQTLFSGYTDGKIRCWGVN 315
            MG+QLSLR ELKGHAGWVTSIATHADNPNLVLSSSRDKTVMVWN+ G EDYG PQRALRGHGHFVSDVIISSDGQFALS SWDGTLRLWEIKTGK+TR FVGHSKDVLSVSFS DNRQIVSGSRDKT+KLWNTLGECKFTIT+ GHSEWVSCVRFSPSPTAPVIVSCGWDKRVKVWNLA+CKLKQNLIGH+GYLNVVTVSPDGSLCASGGKDGTAMLWDLNEGKRLYSLDAGDIIHSLVFSPNRYWLCAATSQGIKIWDLESKDMVD+LQPKWPVQGKHSLSPQPYCTSLAWSADGQTLFSGYTDGKIRCW VN
Sbjct:    1 MGDQLSLRAELKGHAGWVTSIATHADNPNLVLSSSRDKTVMVWNLTGGEDYGYPQRALRGHGHFVSDVIISSDGQFALSGSWDGTLRLWEIKTGKSTRTFVGHSKDVLSVSFSHDNRQIVSGSRDKTIKLWNTLGECKFTITEGGHSEWVSCVRFSPSPTAPVIVSCGWDKRVKVWNLADCKLKQNLIGHTGYLNVVTVSPDGSLCASGGKDGTAMLWDLNEGKRLYSLDAGDIIHSLVFSPNRYWLCAATSQGIKIWDLESKDMVDHLQPKWPVQGKHSLSPQPYCTSLAWSADGQTLFSGYTDGKIRCWSVN 314
The following BLAST results are available for this feature:
BLAST of NO09G01520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27643.18.900e-18194.59guanine nucleotide binding protein [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01520NO09G01520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01520.1NO09G01520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01520.1.cds1NO09G01520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01520.1 ID=NO09G01520.1|Name=NO09G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=945bp
ATGGGAGAGCAGTTGAGCCTCCGAGGCGAGCTCAAGGGCCACGCTGGCTG
GGTAACATCCATCGCCACTCACGCCGACAACCCCAATCTGGTCCTGTCCA
GTTCGAGGGACAAGACGGTGATGGTCTGGAACATTGACGGCTCCGAGGAC
TACGGCCAGCCCCAGCGGGCCCTCCGCGGCCACGGGCACTTCGTCTCCGA
TGTCATCATCTCTTCAGATGGGCAGTTTGCGCTGTCGAGCTCGTGGGACG
GGACCCTTCGATTGTGGGAGATCAAGACCGGAAAGACCACCCGTCGATTC
GTGGGCCATTCCAAGGACGTGCTCTCTGTCTCTTTCTCTCCGGACAACCG
ACAGATTGTTTCTGGCTCCCGGGATAAGACCGTCAAGCTCTGGAACACCC
TGGGCGAGTGCAAGTTCACCATCACCGACGAAGGCCACTCCGAGTGGGTT
TCCTGCGTCCGATTCTCTCCTTCCCCGACAGCACCCGTCATCGTCTCGTG
CGGGTGGGACAAGCGCGTCAAGGTTTGGAACCTGGCCAACTGCAAGCTGA
AGCAGAACCTGATCGGCCACTCAGGGTACCTTAATGTCGTCACCGTCTCA
CCCGACGGCTCCCTCTGCGCCTCGGGCGGAAAAGACGGCACGGCAATGCT
CTGGGACTTGAATGAAGGCAAGCGCCTGTACTCCTTGGATGCCGGGGACA
TCATCCACTCCCTCGTCTTCTCCCCCAACCGTTACTGGCTGTGCGCTGCC
ACCTCCCAGGGAATCAAAATTTGGGACTTGGAGAGCAAGGACATGGTCGA
CAACTTGCAACCCAAATGGCCCGTGCAAGGCAAGCACTCCCTCTCCCCCC
AGCCGTACTGCACCTCCCTGGCCTGGTCTGCGGATGGGCAGACTTTGTTT
TCGGGGTACACGGACGGGAAGATCCGTTGTTGGGGCGTGAACTAA
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protein sequence of NO09G01520.1

>NO09G01520.1-protein ID=NO09G01520.1-protein|Name=NO09G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MGEQLSLRGELKGHAGWVTSIATHADNPNLVLSSSRDKTVMVWNIDGSED
YGQPQRALRGHGHFVSDVIISSDGQFALSSSWDGTLRLWEIKTGKTTRRF
VGHSKDVLSVSFSPDNRQIVSGSRDKTVKLWNTLGECKFTITDEGHSEWV
SCVRFSPSPTAPVIVSCGWDKRVKVWNLANCKLKQNLIGHSGYLNVVTVS
PDGSLCASGGKDGTAMLWDLNEGKRLYSLDAGDIIHSLVFSPNRYWLCAA
TSQGIKIWDLESKDMVDNLQPKWPVQGKHSLSPQPYCTSLAWSADGQTLF
SGYTDGKIRCWGVN*
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mRNA from alignment at chr9:481300..482244-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01520.1 ID=NO09G01520.1|Name=NO09G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=945bp|location=Sequence derived from alignment at chr9:481300..482244- (Nannochloropsis oceanica)
ATGGGAGAGCAGTTGAGCCTCCGAGGCGAGCTCAAGGGCCACGCTGGCTG
GGTAACATCCATCGCCACTCACGCCGACAACCCCAATCTGGTCCTGTCCA
GTTCGAGGGACAAGACGGTGATGGTCTGGAACATTGACGGCTCCGAGGAC
TACGGCCAGCCCCAGCGGGCCCTCCGCGGCCACGGGCACTTCGTCTCCGA
TGTCATCATCTCTTCAGATGGGCAGTTTGCGCTGTCGAGCTCGTGGGACG
GGACCCTTCGATTGTGGGAGATCAAGACCGGAAAGACCACCCGTCGATTC
GTGGGCCATTCCAAGGACGTGCTCTCTGTCTCTTTCTCTCCGGACAACCG
ACAGATTGTTTCTGGCTCCCGGGATAAGACCGTCAAGCTCTGGAACACCC
TGGGCGAGTGCAAGTTCACCATCACCGACGAAGGCCACTCCGAGTGGGTT
TCCTGCGTCCGATTCTCTCCTTCCCCGACAGCACCCGTCATCGTCTCGTG
CGGGTGGGACAAGCGCGTCAAGGTTTGGAACCTGGCCAACTGCAAGCTGA
AGCAGAACCTGATCGGCCACTCAGGGTACCTTAATGTCGTCACCGTCTCA
CCCGACGGCTCCCTCTGCGCCTCGGGCGGAAAAGACGGCACGGCAATGCT
CTGGGACTTGAATGAAGGCAAGCGCCTGTACTCCTTGGATGCCGGGGACA
TCATCCACTCCCTCGTCTTCTCCCCCAACCGTTACTGGCTGTGCGCTGCC
ACCTCCCAGGGAATCAAAATTTGGGACTTGGAGAGCAAGGACATGGTCGA
CAACTTGCAACCCAAATGGCCCGTGCAAGGCAAGCACTCCCTCTCCCCCC
AGCCGTACTGCACCTCCCTGGCCTGGTCTGCGGATGGGCAGACTTTGTTT
TCGGGGTACACGGACGGGAAGATCCGTTGTTGGGGCGTGAACTAA
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Coding sequence (CDS) from alignment at chr9:481300..482244-

>NO09G01520.1 ID=NO09G01520.1|Name=NO09G01520.1|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at chr9:481300..482244- (Nannochloropsis oceanica)
ATGGGAGAGCAGTTGAGCCTCCGAGGCGAGCTCAAGGGCCACGCTGGCTG
GGTAACATCCATCGCCACTCACGCCGACAACCCCAATCTGGTCCTGTCCA
GTTCGAGGGACAAGACGGTGATGGTCTGGAACATTGACGGCTCCGAGGAC
TACGGCCAGCCCCAGCGGGCCCTCCGCGGCCACGGGCACTTCGTCTCCGA
TGTCATCATCTCTTCAGATGGGCAGTTTGCGCTGTCGAGCTCGTGGGACG
GGACCCTTCGATTGTGGGAGATCAAGACCGGAAAGACCACCCGTCGATTC
GTGGGCCATTCCAAGGACGTGCTCTCTGTCTCTTTCTCTCCGGACAACCG
ACAGATTGTTTCTGGCTCCCGGGATAAGACCGTCAAGCTCTGGAACACCC
TGGGCGAGTGCAAGTTCACCATCACCGACGAAGGCCACTCCGAGTGGGTT
TCCTGCGTCCGATTCTCTCCTTCCCCGACAGCACCCGTCATCGTCTCGTG
CGGGTGGGACAAGCGCGTCAAGGTTTGGAACCTGGCCAACTGCAAGCTGA
AGCAGAACCTGATCGGCCACTCAGGGTACCTTAATGTCGTCACCGTCTCA
CCCGACGGCTCCCTCTGCGCCTCGGGCGGAAAAGACGGCACGGCAATGCT
CTGGGACTTGAATGAAGGCAAGCGCCTGTACTCCTTGGATGCCGGGGACA
TCATCCACTCCCTCGTCTTCTCCCCCAACCGTTACTGGCTGTGCGCTGCC
ACCTCCCAGGGAATCAAAATTTGGGACTTGGAGAGCAAGGACATGGTCGA
CAACTTGCAACCCAAATGGCCCGTGCAAGGCAAGCACTCCCTCTCCCCCC
AGCCGTACTGCACCTCCCTGGCCTGGTCTGCGGATGGGCAGACTTTGTTT
TCGGGGTACACGGACGGGAAGATCCGTTGTTGGGGCGTGAACTAA
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Synonyms
Publications