NO09G01500.1, NO09G01500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01500.1
Unique NameNO09G01500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1134
Alignment locationchr9:474045..475260 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:474045..475260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G01500.1 vs.
Match: EWM27651.1 (3-methyladenine dna glycosylase [Nannochloropsis gaditana])

HSP 1 Score: 371.3 bits (952), Expect = 3.500e-99
Identity = 193/304 (63.49%), Postives = 223/304 (73.36%), Query Frame = 0
Query:   36 SSSSTGTTTAPIRGLLPSLLLPPHVESAPLPATVVLEKVRQYVETVIAYETHHLPVVKCSKSGSHRIRTPESFRSDALTTARWLIGARLVRVLPCGTRLSGKIVEVESYLGSHDKGAHSYGGRRTPRLAPMYEAGGVAYIYHMHSCSCLNVIASEIDDPVGVLIRALEPEEGIEHMLQNRLTARVLRGSKKKSLSSSSSSSSSSSIVLPRVEDLSETERRKLQAELCAGPGRLCSALAVDHSMSGLDLIEGKVLFLERGEHVLASELMASPRIGIGYAGLWQAAPLRFSVLGSQCVSKPWPWRQ 340
            SS    T+  P R L  +      + S+      +L  V Q VE+ +A+E HHLPVVKC+ +  HR+ TP+SF +DAL TARWL+GARLVRVLPCGTRLSGKIVEVE+YLG HDKGAHSYGG+RTPRL PM+ AGGVAYIYHMH+CSCLNVIAS+  DPVGVLIRALEP EG   MLQNRL AR LRG  K +              +P V D++ +ER KL AELCAGPGRLC ALAVDH MSG DL+ G  LFLERGEHV AS+L+ SPRIGI YAGLW+ APLRFSVLG++ VSKPWP  Q
Sbjct:  119 SSIHVTTSRTPTRRLSENF--SSSINSSVETVRAMLRNVSQRVESAVAFEAHHLPVVKCTDTAHHRVSTPKSFEADALITARWLLGARLVRVLPCGTRLSGKIVEVEAYLGPHDKGAHSYGGKRTPRLEPMFAAGGVAYIYHMHACSCLNVIASKEGDPVGVLIRALEPVEGTSIMLQNRLRARALRGKNKTNRGP-----------IPHVADMNASEREKLLAELCAGPGRLCHALAVDHLMSGSDLVGGAQLFLERGEHVPASQLVVSPRIGIEYAGLWKEAPLRFSVLGNRHVSKPWPRAQ 409          
The following BLAST results are available for this feature:
BLAST of NO09G01500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27651.13.500e-9963.493-methyladenine dna glycosylase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01500NO09G01500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01500.1NO09G01500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01500.1.cds1NO09G01500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01500.1.cds2NO09G01500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01500.1 ID=NO09G01500.1|Name=NO09G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp
ATGACGGCCATGGCAGAAGATGAAGCAGCGGTGAACAAGCAGCAAACCTC
CCCACACCCAACTCCGTTCCCTTCCCCTGTCGTTCTGAGCAGCAGCAACA
ACAATAGCAGCAGCAGCACGGGCACAACCACGGCTCCCATCCGCGGCCTG
CTTCCATCCTTGTTACTGCCGCCCCACGTGGAAAGCGCACCTTTGCCCGC
CACAGTTGTCTTGGAAAAAGTCAGGCAGTATGTAGAAACTGTCATCGCCT
ACGAAACTCACCATTTGCCTGTTGTTAAGTGCAGCAAGAGTGGGAGCCAT
CGCATCAGAACTCCGGAAAGCTTTCGAAGTGATGCCTTGACCACCGCTCG
TTGGTTAATAGGGGCGAGGTTAGTAAGGGTGCTACCGTGTGGAACGCGTC
TGAGCGGAAAGATTGTGGAAGTAGAAAGTTATTTGGGCAGTCATGACAAA
GGGGCGCACAGTTATGGTGGGAGAAGGACGCCGCGACTTGCCCCTATGTA
TGAGGCAGGGGGTGTGGCATATATTTATCACATGCACTCCTGCTCCTGTT
TGAATGTGATTGCATCTGAAATTGATGATCCGGTGGGTGTCTTGATTCGT
GCCTTGGAGCCCGAGGAAGGGATAGAGCACATGCTCCAAAATCGACTGAC
GGCACGCGTCCTTCGGGGGAGTAAAAAGAAGTCCTTGTCATCCTCATCGT
CGTCGTCCTCCTCCTCCTCTATAGTACTGCCACGCGTGGAAGACTTATCA
GAAACCGAGAGGCGGAAGCTTCAAGCGGAGTTGTGTGCGGGACCCGGGCG
GTTATGTTCTGCCTTGGCCGTGGATCACTCGATGAGTGGGTTGGATTTGA
TTGAAGGCAAGGTGTTGTTTTTAGAAAGAGGAGAACATGTGCTTGCGTCT
GAATTGATGGCGTCTCCGAGGATTGGGATTGGTTATGCAGGGTTATGGCA
GGCGGCGCCGTTGAGGTTCTCGGTGCTGGGCAGTCAATGTGTGAGTAAGC
CGTGGCCGTGGCGACAAGCAGGGAGAGGAGGCGGAACAGAAAGAGGAAAA
AAGGAAGGAGGAGGAGAAGGAGGAGGGAGAGGAGGAGGAGGTGATGGACA
AAGGGGGAGAAAGCGAATGAAAACAATTCAATAA
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protein sequence of NO09G01500.1

>NO09G01500.1-protein ID=NO09G01500.1-protein|Name=NO09G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MTAMAEDEAAVNKQQTSPHPTPFPSPVVLSSSNNNSSSSTGTTTAPIRGL
LPSLLLPPHVESAPLPATVVLEKVRQYVETVIAYETHHLPVVKCSKSGSH
RIRTPESFRSDALTTARWLIGARLVRVLPCGTRLSGKIVEVESYLGSHDK
GAHSYGGRRTPRLAPMYEAGGVAYIYHMHSCSCLNVIASEIDDPVGVLIR
ALEPEEGIEHMLQNRLTARVLRGSKKKSLSSSSSSSSSSSIVLPRVEDLS
ETERRKLQAELCAGPGRLCSALAVDHSMSGLDLIEGKVLFLERGEHVLAS
ELMASPRIGIGYAGLWQAAPLRFSVLGSQCVSKPWPWRQAGRGGGTERGK
KEGGGEGGGRGGGGDGQRGRKRMKTIQ*
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mRNA from alignment at chr9:474045..475260+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01500.1 ID=NO09G01500.1|Name=NO09G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1216bp|location=Sequence derived from alignment at chr9:474045..475260+ (Nannochloropsis oceanica)
ATGACGGCCATGGCAGAAGATGAAGCAGCGGTGAACAAGCAGCAAACCTC CCCACACCCAACTCCGTTCCCTTCCCCTGTCGTTCTGAGCAGCAGCAACA ACAATAGCAGCAGCAGCACGGGCACAACCACGGCTCCCATCCGCGGCCTG CTTCCATCCTTGTTACTGCCGCCCCACGTGGAAAGCGCACCTTTGCCCGC CACAGTTGTCTTGGAAAAAGTCAGGCAGTATGTAGAAACTGTCATCGCCT ACGAAACTCACCATTTGCCTGTTGTTAAGTGCAGCAAGAGTGGGAGCCAT CGCATCAGAACTCCGGAAAGCTTTCGAAGTGATGCCTTGACCACCGCTCG TTGGTTAATAGGGGCGAGGTTAGTAAGGGTGCTACCGTGTGGAACGCGTC TGAGCGGAAAGATTGTGGAAGTAGAAAGTTATTTGGGCAGTCATGACAAA GGGGCGCACAGTTATGGTGGGAGAAGGACGCCGCGACTTGCCCCTATGTA TGAGGCAGGGGGTGTGGCATATATTTATCACATGGTAAGGAAGAGAGGAA GGGAGGGAAGGGAGGGAGGTATAGGAATTTATCTAACTCTATTTATGTGG CCCCATACAAACACAGCACTCCTGCTCCTGTTTGAATGTGATTGCATCTG AAATTGATGATCCGGTGGGTGTCTTGATTCGTGCCTTGGAGCCCGAGGAA GGGATAGAGCACATGCTCCAAAATCGACTGACGGCACGCGTCCTTCGGGG GAGTAAAAAGAAGTCCTTGTCATCCTCATCGTCGTCGTCCTCCTCCTCCT CTATAGTACTGCCACGCGTGGAAGACTTATCAGAAACCGAGAGGCGGAAG CTTCAAGCGGAGTTGTGTGCGGGACCCGGGCGGTTATGTTCTGCCTTGGC CGTGGATCACTCGATGAGTGGGTTGGATTTGATTGAAGGCAAGGTGTTGT TTTTAGAAAGAGGAGAACATGTGCTTGCGTCTGAATTGATGGCGTCTCCG AGGATTGGGATTGGTTATGCAGGGTTATGGCAGGCGGCGCCGTTGAGGTT CTCGGTGCTGGGCAGTCAATGTGTGAGTAAGCCGTGGCCGTGGCGACAAG CAGGGAGAGGAGGCGGAACAGAAAGAGGAAAAAAGGAAGGAGGAGGAGAA GGAGGAGGGAGAGGAGGAGGAGGTGATGGACAAAGGGGGAGAAAGCGAAT GAAAACAATTCAATAA
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Coding sequence (CDS) from alignment at chr9:474045..475260+

>NO09G01500.1 ID=NO09G01500.1|Name=NO09G01500.1|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at chr9:474045..475260+ (Nannochloropsis oceanica)
ATGACGGCCATGGCAGAAGATGAAGCAGCGGTGAACAAGCAGCAAACCTC
CCCACACCCAACTCCGTTCCCTTCCCCTGTCGTTCTGAGCAGCAGCAACA
ACAATAGCAGCAGCAGCACGGGCACAACCACGGCTCCCATCCGCGGCCTG
CTTCCATCCTTGTTACTGCCGCCCCACGTGGAAAGCGCACCTTTGCCCGC
CACAGTTGTCTTGGAAAAAGTCAGGCAGTATGTAGAAACTGTCATCGCCT
ACGAAACTCACCATTTGCCTGTTGTTAAGTGCAGCAAGAGTGGGAGCCAT
CGCATCAGAACTCCGGAAAGCTTTCGAAGTGATGCCTTGACCACCGCTCG
TTGGTTAATAGGGGCGAGGTTAGTAAGGGTGCTACCGTGTGGAACGCGTC
TGAGCGGAAAGATTGTGGAAGTAGAAAGTTATTTGGGCAGTCATGACAAA
GGGGCGCACAGTTATGGTGGGAGAAGGACGCCGCGACTTGCCCCTATGTA
TGAGGCAGGGGGTGTGGCATATATTTATCACATGCACTCCTGCTCCTGTT
TGAATGTGATTGCATCTGAAATTGATGATCCGGTGGGTGTCTTGATTCGT
GCCTTGGAGCCCGAGGAAGGGATAGAGCACATGCTCCAAAATCGACTGAC
GGCACGCGTCCTTCGGGGGAGTAAAAAGAAGTCCTTGTCATCCTCATCGT
CGTCGTCCTCCTCCTCCTCTATAGTACTGCCACGCGTGGAAGACTTATCA
GAAACCGAGAGGCGGAAGCTTCAAGCGGAGTTGTGTGCGGGACCCGGGCG
GTTATGTTCTGCCTTGGCCGTGGATCACTCGATGAGTGGGTTGGATTTGA
TTGAAGGCAAGGTGTTGTTTTTAGAAAGAGGAGAACATGTGCTTGCGTCT
GAATTGATGGCGTCTCCGAGGATTGGGATTGGTTATGCAGGGTTATGGCA
GGCGGCGCCGTTGAGGTTCTCGGTGCTGGGCAGTCAATGTGTGAGTAAGC
CGTGGCCGTGGCGACAAGCAGGGAGAGGAGGCGGAACAGAAAGAGGAAAA
AAGGAAGGAGGAGGAGAAGGAGGAGGGAGAGGAGGAGGAGGTGATGGACA
AAGGGGGAGAAAGCGAATGAAAACAATTCAATAA
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Synonyms
Publications