NO09G01460.1, NO09G01460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01460.1
Unique NameNO09G01460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1002
Alignment locationchr9:466720..467721 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:466720..467721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01460.1 vs.
Match: WP_015260379.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Thioalkalivibrio nitratireducens]; AGA35286.1 tRNA (guanine46-N7-)-methyltransferase [Thioalkalivibrio nitratireducens DSM 14787])

HSP 1 Score: 139.8 bits (351), Expect = 1.500e-29
Identity = 97/277 (35.02%), Postives = 130/277 (46.93%), Query Frame = 0 
Query:   49 RSPAERKRLRNLQKRPGWYRRVSRWVGKGTKKRIRELWPRYGIEPPGWQVKMDIPALFAPDREVRTVVVDVGFGDGATLVTKALELQELAPEVGFMGCEWHSASVGGALTRMNETAVENVRMLRGDFLHHLRAGWFAPGALDEVCIFFPDPWPRPEDHERRVINAVSVGHLAGCVKPGGFLHVATDVRDYAAWVGKVMEGDGGNWEACAVPKESVLYRSPSQDGVEDGPHYHHGLEEVEAIYGLLEARPRWRPLTRYESRGIHELEHKIYDLCYRRK 326
            R   ER+R+R+   R G        +  G  + +  LWPRYG++P       D  ALF        V +++GFG G +L  +A    E APE  F+G E H   VG  L  M    +EN+R+   D +  L      P +LD V IFFPDPW +   H+RR+I    V  LA  ++P G LH+ATD  DYAA V  VM                         GVEDG     G +        L ARP  RP TR+E RG+  L H+++D  +RR+
Sbjct:    8 RLAVERRRVRSFVCREGR-------LTTGQARALETLWPRYGVDPG--DAPFDRAALFG---RCARVTLEIGFGSGESLARQA----EQAPEQDFIGIEVHRPGVGHLLVEMERRGLENIRIFDRDAVEVLER-CILPASLDAVQIFFPDPWHKKRHHKRRLIQPDFVRLLASRLRPDGLLHIATDWDDYAAHVQAVM-------------------------GVEDGGFRPEGPQP-------LPARPERRPETRFERRGL-RLGHRVHDFLFRRR 234
The following BLAST results are available for this feature:
BLAST of NO09G01460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_015260379.11.500e-2935.02tRNA (guanosine(46)-N7)-methyltransferase TrmB [Th... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01460NO09G01460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01460.1NO09G01460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01460.1.cds1NO09G01460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01460.1 ID=NO09G01460.1|Name=NO09G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1002bp
ATGCGTGAACCACCGTCCCCACAGGAGGATAGCGCAGCCCTTATGTGTAC
ATCATCGAACCAGGAGCAGGGAGATGACTGGAAAGCAACAACGATCGCGA
TGATGGAGGGACTAGATTTGGAGGAGGAAGACGTCAACCCCAGACGTTCC
CCGGCGGAACGAAAGCGGCTGCGCAACTTACAAAAGAGGCCTGGGTGGTA
CCGCCGTGTCTCGCGGTGGGTGGGTAAGGGCACGAAAAAGCGCATCCGAG
AGCTTTGGCCACGGTACGGGATAGAGCCTCCGGGCTGGCAAGTTAAGATG
GACATTCCGGCCCTCTTTGCGCCGGACCGCGAGGTGCGAACGGTGGTGGT
AGATGTGGGGTTTGGAGACGGGGCAACCCTTGTGACCAAGGCCTTGGAGC
TACAAGAATTAGCGCCCGAAGTGGGATTCATGGGCTGTGAGTGGCATTCT
GCCAGTGTTGGGGGAGCCTTGACGAGGATGAATGAAACGGCGGTGGAAAA
TGTGCGAATGTTGCGTGGTGATTTCCTGCACCACTTACGGGCTGGTTGGT
TCGCACCCGGGGCTTTAGACGAGGTTTGCATCTTTTTCCCGGACCCGTGG
CCAAGGCCTGAAGATCACGAGCGGCGGGTCATAAATGCTGTGTCGGTGGG
ACATTTGGCGGGGTGTGTGAAGCCTGGAGGGTTTCTACATGTCGCAACCG
ACGTGCGGGATTACGCAGCGTGGGTTGGGAAGGTGATGGAAGGAGATGGG
GGCAATTGGGAGGCATGTGCTGTCCCGAAGGAGAGTGTTTTGTACCGAAG
TCCGTCCCAGGATGGGGTGGAGGACGGGCCGCATTATCATCACGGATTGG
AGGAGGTGGAGGCGATATACGGGTTGCTTGAGGCACGCCCACGGTGGCGG
CCTTTGACGAGGTATGAAAGTCGAGGAATTCACGAATTAGAGCATAAGAT
TTACGATTTGTGTTACCGACGGAAGTATATACCGGGAGAAGAATCAGCAT
GA
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protein sequence of NO09G01460.1

>NO09G01460.1-protein ID=NO09G01460.1-protein|Name=NO09G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MREPPSPQEDSAALMCTSSNQEQGDDWKATTIAMMEGLDLEEEDVNPRRS
PAERKRLRNLQKRPGWYRRVSRWVGKGTKKRIRELWPRYGIEPPGWQVKM
DIPALFAPDREVRTVVVDVGFGDGATLVTKALELQELAPEVGFMGCEWHS
ASVGGALTRMNETAVENVRMLRGDFLHHLRAGWFAPGALDEVCIFFPDPW
PRPEDHERRVINAVSVGHLAGCVKPGGFLHVATDVRDYAAWVGKVMEGDG
GNWEACAVPKESVLYRSPSQDGVEDGPHYHHGLEEVEAIYGLLEARPRWR
PLTRYESRGIHELEHKIYDLCYRRKYIPGEESA*
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mRNA from alignment at chr9:466720..467721+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01460.1 ID=NO09G01460.1|Name=NO09G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1002bp|location=Sequence derived from alignment at chr9:466720..467721+ (Nannochloropsis oceanica)
ATGCGTGAACCACCGTCCCCACAGGAGGATAGCGCAGCCCTTATGTGTAC
ATCATCGAACCAGGAGCAGGGAGATGACTGGAAAGCAACAACGATCGCGA
TGATGGAGGGACTAGATTTGGAGGAGGAAGACGTCAACCCCAGACGTTCC
CCGGCGGAACGAAAGCGGCTGCGCAACTTACAAAAGAGGCCTGGGTGGTA
CCGCCGTGTCTCGCGGTGGGTGGGTAAGGGCACGAAAAAGCGCATCCGAG
AGCTTTGGCCACGGTACGGGATAGAGCCTCCGGGCTGGCAAGTTAAGATG
GACATTCCGGCCCTCTTTGCGCCGGACCGCGAGGTGCGAACGGTGGTGGT
AGATGTGGGGTTTGGAGACGGGGCAACCCTTGTGACCAAGGCCTTGGAGC
TACAAGAATTAGCGCCCGAAGTGGGATTCATGGGCTGTGAGTGGCATTCT
GCCAGTGTTGGGGGAGCCTTGACGAGGATGAATGAAACGGCGGTGGAAAA
TGTGCGAATGTTGCGTGGTGATTTCCTGCACCACTTACGGGCTGGTTGGT
TCGCACCCGGGGCTTTAGACGAGGTTTGCATCTTTTTCCCGGACCCGTGG
CCAAGGCCTGAAGATCACGAGCGGCGGGTCATAAATGCTGTGTCGGTGGG
ACATTTGGCGGGGTGTGTGAAGCCTGGAGGGTTTCTACATGTCGCAACCG
ACGTGCGGGATTACGCAGCGTGGGTTGGGAAGGTGATGGAAGGAGATGGG
GGCAATTGGGAGGCATGTGCTGTCCCGAAGGAGAGTGTTTTGTACCGAAG
TCCGTCCCAGGATGGGGTGGAGGACGGGCCGCATTATCATCACGGATTGG
AGGAGGTGGAGGCGATATACGGGTTGCTTGAGGCACGCCCACGGTGGCGG
CCTTTGACGAGGTATGAAAGTCGAGGAATTCACGAATTAGAGCATAAGAT
TTACGATTTGTGTTACCGACGGAAGTATATACCGGGAGAAGAATCAGCAT
GA
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Coding sequence (CDS) from alignment at chr9:466720..467721+

>NO09G01460.1 ID=NO09G01460.1|Name=NO09G01460.1|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at chr9:466720..467721+ (Nannochloropsis oceanica)
ATGCGTGAACCACCGTCCCCACAGGAGGATAGCGCAGCCCTTATGTGTAC
ATCATCGAACCAGGAGCAGGGAGATGACTGGAAAGCAACAACGATCGCGA
TGATGGAGGGACTAGATTTGGAGGAGGAAGACGTCAACCCCAGACGTTCC
CCGGCGGAACGAAAGCGGCTGCGCAACTTACAAAAGAGGCCTGGGTGGTA
CCGCCGTGTCTCGCGGTGGGTGGGTAAGGGCACGAAAAAGCGCATCCGAG
AGCTTTGGCCACGGTACGGGATAGAGCCTCCGGGCTGGCAAGTTAAGATG
GACATTCCGGCCCTCTTTGCGCCGGACCGCGAGGTGCGAACGGTGGTGGT
AGATGTGGGGTTTGGAGACGGGGCAACCCTTGTGACCAAGGCCTTGGAGC
TACAAGAATTAGCGCCCGAAGTGGGATTCATGGGCTGTGAGTGGCATTCT
GCCAGTGTTGGGGGAGCCTTGACGAGGATGAATGAAACGGCGGTGGAAAA
TGTGCGAATGTTGCGTGGTGATTTCCTGCACCACTTACGGGCTGGTTGGT
TCGCACCCGGGGCTTTAGACGAGGTTTGCATCTTTTTCCCGGACCCGTGG
CCAAGGCCTGAAGATCACGAGCGGCGGGTCATAAATGCTGTGTCGGTGGG
ACATTTGGCGGGGTGTGTGAAGCCTGGAGGGTTTCTACATGTCGCAACCG
ACGTGCGGGATTACGCAGCGTGGGTTGGGAAGGTGATGGAAGGAGATGGG
GGCAATTGGGAGGCATGTGCTGTCCCGAAGGAGAGTGTTTTGTACCGAAG
TCCGTCCCAGGATGGGGTGGAGGACGGGCCGCATTATCATCACGGATTGG
AGGAGGTGGAGGCGATATACGGGTTGCTTGAGGCACGCCCACGGTGGCGG
CCTTTGACGAGGTATGAAAGTCGAGGAATTCACGAATTAGAGCATAAGAT
TTACGATTTGTGTTACCGACGGAAGTATATACCGGGAGAAGAATCAGCAT
GA
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Synonyms
Publications