NO09G01440.1, NO09G01440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01440.1
Unique NameNO09G01440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1773
Alignment locationchr9:459831..461603 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:459831..461603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01440.1 vs.
Match: EWM27650.1 (FIST C domain protein [Nannochloropsis gaditana])

HSP 1 Score: 514.2 bits (1323), Expect = 5.300e-142
Identity = 300/567 (52.91%), Postives = 380/567 (67.02%), Query Frame = 0 
Query:    5 SDIPATSHFSILFTDLLLEIVSYCNLEALLHLRASARLWAVLVAEHEQSRPSFTTVVGALPKLASQVKLHCSATPSVGFLFSANGSGPAKLTEALSALPSSCQVIGGGSPYPFTGHGKVFTQAGGRDGDAVLSLLSLFEAHAHVFMVNNGDLDA--AEKLLTGGRSVVRENILGLVPTIDYKMFIIIPGQCAEHVEFLLQALQEGHPRAAIIGGVFSRNVFCWKDGMFQTPGGAAKN--KGIVGMALWGNVPLQAVVSRGVVPRCPALKVADWKYDRNVEAISVKSVYQPASRAAAASSAATATITENPYTIFQEMGVD-NMYVGLQIESPSLESGAAGVGDGGGGGETRITAHA------PYELPSFEFALSQEGDIELLLSFANASQ-LPPANAQLAIRFFELTRLAAQAHVQSKLRAVAAELGQNKEKVLGALLFSCNGRGPRRFMDTAHSNFDALMFMSHFPDTPLSGIYAMGEIGPQATYVDDDEEGME----ERGVAVASDKEEVEQRGSILRNSQSGSCALQGFTAVFALLVTPQRSTASSPLLMVLNTEGLAVAVQRVL 556
            S  P  S F+ + T++LLEIVS+ +LE L  LRA++RLW VLVAE+EQ+ PSFT +V  +P L +Q K  C ATPSVGFLF+   S P ++ + LS LP  CQVIGG S YPFTG  K   Q      DA+L+LLSL EA A  F V N DL+A         GR  +RE+ILGL P+I+YK+ +++PGQ A++VE LL+ALQEG P AAI+GG+F+RN+FCWKDG  + PGG   N   GIVGMALWGNVPLQAVVSRGVVP  P+  V+ W+Y+   EA+ VKS+ +PAS  A   SA    +  NP   F+    + ++YVGLQIE  ++     GV  GG G ++ +   A      PYEL SF FA+  EG   LLLSF N  Q  PP NA+L ++FF+L   +AQAHVQ K+RAVA EL +N + VLGALLFSCNGRGPRRF+D   ++ DA  F + FP   + G+YAMGEIGPQATYVD++EE  E    + G+ V + K        ILRNSQSGSCALQGFTAVFALLV P+RS+ SS LL +LN +GL+ A++ VL
Sbjct:    8 SSDPLPSFFTPVSTEVLLEIVSFSDLETLCQLRATSRLWTVLVAEYEQANPSFTALVEPMPALPAQAKRLCRATPSVGFLFNQMRSSPTEVAQMLSHLPPRCQVIGGDSQYPFTGADKRIVQGNTYAQDAILNLLSLPEACAQTFTVQNSDLEAVTVAPCEREGRRWLREDILGLSPSIEYKVMVVLPGQRADNVELLLKALQEGSPSAAIVGGIFARNLFCWKDGALRRPGGEGGNAEDGIVGMALWGNVPLQAVVSRGVVPCSPSFTVSSWEYEG--EAVVVKSLSRPASGDARLDSAPDVVV--NPLVAFEHAQRNGDIYVGLQIEDSAVPVN-GGVDGGGAGHDSGVPGSAFKSRPPPYELLSFVFAV-DEGAPVLLLSFVNKLQGGPPPNARLTVKFFDLKTQSAQAHVQKKMRAVAEELRRNGQDVLGALLFSCNGRGPRRFLDARSTHVDASAFTAEFPGRQVGGMYAMGEIGPQATYVDEEEEDDEIAGTDAGMVVKNGKGLGAGGSQILRNSQSGSCALQGFTAVFALLVAPRRSSQSSHLLDILNKDGLSAAIRLVL 568
The following BLAST results are available for this feature:
BLAST of NO09G01440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27650.15.300e-14252.91FIST C domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01440NO09G01440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01440.1NO09G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01440.1.cds1NO09G01440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01440.1 ID=NO09G01440.1|Name=NO09G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1773bp
ATGGCCTCGACGTCTGACATCCCCGCCACGTCTCATTTCAGCATCCTGTT
CACGGACTTGCTTCTTGAGATTGTGTCTTACTGTAATCTTGAGGCCCTTC
TCCATCTTCGTGCATCGGCCCGGCTATGGGCCGTACTCGTCGCTGAGCAC
GAGCAGTCCCGTCCGTCATTCACCACGGTGGTGGGGGCACTGCCGAAGCT
GGCATCCCAGGTCAAGCTGCATTGCTCAGCGACGCCCTCGGTGGGCTTTC
TTTTCTCTGCCAACGGGTCGGGCCCGGCGAAGCTGACCGAGGCTTTGTCC
GCATTGCCTTCAAGCTGTCAAGTGATTGGGGGGGGAAGCCCTTACCCGTT
TACAGGACACGGCAAGGTGTTTACACAAGCCGGTGGCCGGGACGGGGATG
CAGTGTTGAGCCTGTTGTCCTTGTTCGAAGCGCATGCGCACGTCTTTATG
GTCAATAACGGGGATCTAGACGCGGCCGAAAAGTTACTGACGGGTGGGCG
AAGCGTTGTGCGGGAAAATATTCTGGGCCTGGTCCCCACTATTGATTACA
AAATGTTCATAATTATACCCGGTCAGTGTGCTGAACACGTGGAGTTTTTA
TTGCAAGCCCTGCAAGAAGGTCATCCTCGCGCTGCAATTATTGGCGGAGT
CTTTTCGCGTAATGTTTTCTGTTGGAAAGACGGTATGTTCCAGACGCCGG
GCGGCGCTGCAAAGAACAAAGGTATTGTTGGCATGGCGTTATGGGGGAAT
GTGCCATTGCAAGCGGTGGTGTCGCGTGGGGTAGTTCCACGGTGCCCGGC
ACTCAAAGTGGCGGATTGGAAGTACGACAGAAACGTGGAGGCTATAAGTG
TCAAGAGCGTTTACCAGCCAGCGTCTCGAGCTGCGGCCGCTTCCTCGGCA
GCAACGGCGACGATTACAGAAAATCCTTACACCATTTTTCAGGAGATGGG
GGTTGACAATATGTACGTAGGCCTCCAAATAGAGTCTCCATCGTTAGAAA
GTGGAGCTGCAGGGGTAGGAGACGGAGGGGGCGGAGGCGAGACGAGGATC
ACGGCCCATGCACCCTACGAATTGCCTTCGTTTGAATTTGCGTTATCACA
GGAGGGAGACATAGAGCTCCTCCTTTCCTTCGCAAATGCATCACAATTGC
CGCCAGCAAACGCGCAGTTGGCGATTCGGTTTTTCGAACTGACGAGGCTT
GCCGCCCAAGCGCACGTGCAGAGTAAATTGAGGGCGGTCGCAGCTGAGCT
GGGGCAAAATAAAGAAAAGGTTCTAGGGGCACTACTCTTTTCTTGCAATG
GGCGGGGGCCGCGGCGGTTTATGGACACCGCTCATTCGAATTTTGATGCC
TTGATGTTCATGAGCCACTTCCCTGACACGCCTCTGAGTGGCATCTACGC
CATGGGCGAGATTGGTCCACAAGCAACGTATGTAGACGACGACGAGGAGG
GTATGGAGGAAAGGGGAGTGGCGGTAGCCAGCGATAAGGAAGAGGTAGAG
CAAAGGGGATCTATTTTGCGGAATAGTCAGTCGGGATCCTGTGCGTTGCA
AGGTTTCACTGCCGTTTTTGCCTTGCTTGTGACACCGCAACGCTCCACCG
CGTCGTCGCCTCTGCTCATGGTGCTAAACACTGAAGGGTTGGCAGTAGCA
GTACAGCGTGTCTTGGAACACCGCGGTATTGGTGGATTTGGGGGGAAAGG
AAGTGGTGCTGTCAAAAGTGGTGGGGGTGGGGGGAATGTGAATGGTACGC
CGGGAGCAGTGCAAAAGGCTTGA
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protein sequence of NO09G01440.1

>NO09G01440.1-protein ID=NO09G01440.1-protein|Name=NO09G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=591bp
MASTSDIPATSHFSILFTDLLLEIVSYCNLEALLHLRASARLWAVLVAEH
EQSRPSFTTVVGALPKLASQVKLHCSATPSVGFLFSANGSGPAKLTEALS
ALPSSCQVIGGGSPYPFTGHGKVFTQAGGRDGDAVLSLLSLFEAHAHVFM
VNNGDLDAAEKLLTGGRSVVRENILGLVPTIDYKMFIIIPGQCAEHVEFL
LQALQEGHPRAAIIGGVFSRNVFCWKDGMFQTPGGAAKNKGIVGMALWGN
VPLQAVVSRGVVPRCPALKVADWKYDRNVEAISVKSVYQPASRAAAASSA
ATATITENPYTIFQEMGVDNMYVGLQIESPSLESGAAGVGDGGGGGETRI
TAHAPYELPSFEFALSQEGDIELLLSFANASQLPPANAQLAIRFFELTRL
AAQAHVQSKLRAVAAELGQNKEKVLGALLFSCNGRGPRRFMDTAHSNFDA
LMFMSHFPDTPLSGIYAMGEIGPQATYVDDDEEGMEERGVAVASDKEEVE
QRGSILRNSQSGSCALQGFTAVFALLVTPQRSTASSPLLMVLNTEGLAVA
VQRVLEHRGIGGFGGKGSGAVKSGGGGGNVNGTPGAVQKA*
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mRNA from alignment at chr9:459831..461603-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01440.1 ID=NO09G01440.1|Name=NO09G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1773bp|location=Sequence derived from alignment at chr9:459831..461603- (Nannochloropsis oceanica)
ATGGCCTCGACGTCTGACATCCCCGCCACGTCTCATTTCAGCATCCTGTT
CACGGACTTGCTTCTTGAGATTGTGTCTTACTGTAATCTTGAGGCCCTTC
TCCATCTTCGTGCATCGGCCCGGCTATGGGCCGTACTCGTCGCTGAGCAC
GAGCAGTCCCGTCCGTCATTCACCACGGTGGTGGGGGCACTGCCGAAGCT
GGCATCCCAGGTCAAGCTGCATTGCTCAGCGACGCCCTCGGTGGGCTTTC
TTTTCTCTGCCAACGGGTCGGGCCCGGCGAAGCTGACCGAGGCTTTGTCC
GCATTGCCTTCAAGCTGTCAAGTGATTGGGGGGGGAAGCCCTTACCCGTT
TACAGGACACGGCAAGGTGTTTACACAAGCCGGTGGCCGGGACGGGGATG
CAGTGTTGAGCCTGTTGTCCTTGTTCGAAGCGCATGCGCACGTCTTTATG
GTCAATAACGGGGATCTAGACGCGGCCGAAAAGTTACTGACGGGTGGGCG
AAGCGTTGTGCGGGAAAATATTCTGGGCCTGGTCCCCACTATTGATTACA
AAATGTTCATAATTATACCCGGTCAGTGTGCTGAACACGTGGAGTTTTTA
TTGCAAGCCCTGCAAGAAGGTCATCCTCGCGCTGCAATTATTGGCGGAGT
CTTTTCGCGTAATGTTTTCTGTTGGAAAGACGGTATGTTCCAGACGCCGG
GCGGCGCTGCAAAGAACAAAGGTATTGTTGGCATGGCGTTATGGGGGAAT
GTGCCATTGCAAGCGGTGGTGTCGCGTGGGGTAGTTCCACGGTGCCCGGC
ACTCAAAGTGGCGGATTGGAAGTACGACAGAAACGTGGAGGCTATAAGTG
TCAAGAGCGTTTACCAGCCAGCGTCTCGAGCTGCGGCCGCTTCCTCGGCA
GCAACGGCGACGATTACAGAAAATCCTTACACCATTTTTCAGGAGATGGG
GGTTGACAATATGTACGTAGGCCTCCAAATAGAGTCTCCATCGTTAGAAA
GTGGAGCTGCAGGGGTAGGAGACGGAGGGGGCGGAGGCGAGACGAGGATC
ACGGCCCATGCACCCTACGAATTGCCTTCGTTTGAATTTGCGTTATCACA
GGAGGGAGACATAGAGCTCCTCCTTTCCTTCGCAAATGCATCACAATTGC
CGCCAGCAAACGCGCAGTTGGCGATTCGGTTTTTCGAACTGACGAGGCTT
GCCGCCCAAGCGCACGTGCAGAGTAAATTGAGGGCGGTCGCAGCTGAGCT
GGGGCAAAATAAAGAAAAGGTTCTAGGGGCACTACTCTTTTCTTGCAATG
GGCGGGGGCCGCGGCGGTTTATGGACACCGCTCATTCGAATTTTGATGCC
TTGATGTTCATGAGCCACTTCCCTGACACGCCTCTGAGTGGCATCTACGC
CATGGGCGAGATTGGTCCACAAGCAACGTATGTAGACGACGACGAGGAGG
GTATGGAGGAAAGGGGAGTGGCGGTAGCCAGCGATAAGGAAGAGGTAGAG
CAAAGGGGATCTATTTTGCGGAATAGTCAGTCGGGATCCTGTGCGTTGCA
AGGTTTCACTGCCGTTTTTGCCTTGCTTGTGACACCGCAACGCTCCACCG
CGTCGTCGCCTCTGCTCATGGTGCTAAACACTGAAGGGTTGGCAGTAGCA
GTACAGCGTGTCTTGGAACACCGCGGTATTGGTGGATTTGGGGGGAAAGG
AAGTGGTGCTGTCAAAAGTGGTGGGGGTGGGGGGAATGTGAATGGTACGC
CGGGAGCAGTGCAAAAGGCTTGA
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Coding sequence (CDS) from alignment at chr9:459831..461603-

>NO09G01440.1 ID=NO09G01440.1|Name=NO09G01440.1|organism=Nannochloropsis oceanica|type=CDS|length=1773bp|location=Sequence derived from alignment at chr9:459831..461603- (Nannochloropsis oceanica)
ATGGCCTCGACGTCTGACATCCCCGCCACGTCTCATTTCAGCATCCTGTT
CACGGACTTGCTTCTTGAGATTGTGTCTTACTGTAATCTTGAGGCCCTTC
TCCATCTTCGTGCATCGGCCCGGCTATGGGCCGTACTCGTCGCTGAGCAC
GAGCAGTCCCGTCCGTCATTCACCACGGTGGTGGGGGCACTGCCGAAGCT
GGCATCCCAGGTCAAGCTGCATTGCTCAGCGACGCCCTCGGTGGGCTTTC
TTTTCTCTGCCAACGGGTCGGGCCCGGCGAAGCTGACCGAGGCTTTGTCC
GCATTGCCTTCAAGCTGTCAAGTGATTGGGGGGGGAAGCCCTTACCCGTT
TACAGGACACGGCAAGGTGTTTACACAAGCCGGTGGCCGGGACGGGGATG
CAGTGTTGAGCCTGTTGTCCTTGTTCGAAGCGCATGCGCACGTCTTTATG
GTCAATAACGGGGATCTAGACGCGGCCGAAAAGTTACTGACGGGTGGGCG
AAGCGTTGTGCGGGAAAATATTCTGGGCCTGGTCCCCACTATTGATTACA
AAATGTTCATAATTATACCCGGTCAGTGTGCTGAACACGTGGAGTTTTTA
TTGCAAGCCCTGCAAGAAGGTCATCCTCGCGCTGCAATTATTGGCGGAGT
CTTTTCGCGTAATGTTTTCTGTTGGAAAGACGGTATGTTCCAGACGCCGG
GCGGCGCTGCAAAGAACAAAGGTATTGTTGGCATGGCGTTATGGGGGAAT
GTGCCATTGCAAGCGGTGGTGTCGCGTGGGGTAGTTCCACGGTGCCCGGC
ACTCAAAGTGGCGGATTGGAAGTACGACAGAAACGTGGAGGCTATAAGTG
TCAAGAGCGTTTACCAGCCAGCGTCTCGAGCTGCGGCCGCTTCCTCGGCA
GCAACGGCGACGATTACAGAAAATCCTTACACCATTTTTCAGGAGATGGG
GGTTGACAATATGTACGTAGGCCTCCAAATAGAGTCTCCATCGTTAGAAA
GTGGAGCTGCAGGGGTAGGAGACGGAGGGGGCGGAGGCGAGACGAGGATC
ACGGCCCATGCACCCTACGAATTGCCTTCGTTTGAATTTGCGTTATCACA
GGAGGGAGACATAGAGCTCCTCCTTTCCTTCGCAAATGCATCACAATTGC
CGCCAGCAAACGCGCAGTTGGCGATTCGGTTTTTCGAACTGACGAGGCTT
GCCGCCCAAGCGCACGTGCAGAGTAAATTGAGGGCGGTCGCAGCTGAGCT
GGGGCAAAATAAAGAAAAGGTTCTAGGGGCACTACTCTTTTCTTGCAATG
GGCGGGGGCCGCGGCGGTTTATGGACACCGCTCATTCGAATTTTGATGCC
TTGATGTTCATGAGCCACTTCCCTGACACGCCTCTGAGTGGCATCTACGC
CATGGGCGAGATTGGTCCACAAGCAACGTATGTAGACGACGACGAGGAGG
GTATGGAGGAAAGGGGAGTGGCGGTAGCCAGCGATAAGGAAGAGGTAGAG
CAAAGGGGATCTATTTTGCGGAATAGTCAGTCGGGATCCTGTGCGTTGCA
AGGTTTCACTGCCGTTTTTGCCTTGCTTGTGACACCGCAACGCTCCACCG
CGTCGTCGCCTCTGCTCATGGTGCTAAACACTGAAGGGTTGGCAGTAGCA
GTACAGCGTGTCTTGGAACACCGCGGTATTGGTGGATTTGGGGGGAAAGG
AAGTGGTGCTGTCAAAAGTGGTGGGGGTGGGGGGAATGTGAATGGTACGC
CGGGAGCAGTGCAAAAGGCTTGA
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Synonyms
Publications