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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:454085..456769 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G01410.1 vs.
Match: EWM27655.1 (hypothetical protein Naga_100059g15 [Nannochloropsis gaditana]) HSP 1 Score: 235.7 bits (600), Expect = 4.100e-58 Identity = 275/722 (38.09%), Postives = 365/722 (50.55%), Query Frame = 0
Query: 1 MAKTMSTPWILPAVKAALGAEDSAGRVGASNNKPAGPSDHRPKVVQVVRGSTQHGYLEVSDKENKIAVFLTPDARQSFHEAMPQKSLSGLSTCMVKLEKWLVSYLPLAVDSATG-SLAHHLPQNTKQDAHTFAPLCLVATKFTVVLSERGQSTYGNPRSINTITEIKRLYRELDPSALITKLATGQGLPRLPDSTGADALPDPVDNQHPVTLTEVKAMLAQDAAYPERRIAGVNVATAAAAAAAAAAAVVAKRAVGAVE---VLGGAGNGAHAINGGAAAGQQMQ-------TPAAAETGRAGAADAATVAERAG-AIAAIASQAEDEEGEQQEEGEAEGKE-IDEDDRLAS----------------QFGASPAREFETQRQEEEEEEEEEEESYESVPVLIPP--PSPARST-RSAASIKATSPTRQMQQQQQEEEAEQQQQQEQRQESPSRRRRTVAAPVDDDAKEGKNEESKALSPKPGGQEEEGKKEGEGISTRSPRAQ------ILQAGP----------GSPHPPSPAQRTSLRRNKKQQDSQAWAMQTQAFSQDFSQTQVDESQQEEEELEEEEEEEEEKEEEEEDELKMVLRRPSVPFPSSPSPGKRPAPTVLAGGGGGGPSPTRVRLSAPTSAAAAATARLYPAAKAAATAASACRSTSSSTPVDTSSLFGGRPTIWGLLGMLKPGGSSPSRNFRKT----GCSGGGGGSGR 671
MAKTMS PWILPAVKAALG +D+ G AS++ G D RPK+VQV+RGS++H YLEVSDKE+++A F+TPDA +F +AMPQ SL+GL TC++KLE+WLVS+ PLA DSATG LAH L +D +FAPLCL ++F+VV +ERGQSTYG P S+N EIK LYRELD +AL+ LA QGLPRLPDS+G D LP+P+ N+ PVT+ EV+ ML + E RIAG + TA A A A V E G GG+ + + + P + +A A + R G + A G ++ +G E + ++++A QFGASP R FETQ EEEEEEEEE E +P L+ SP RST RS A TS R ++ + E + + Q+ RR A+ + DA +G ++ S +P G GK+ GE R+ R + +QAG G+P PP L ++ A +QTQ FSQTQV+ +Q E EE E ++ ED VLRR S P S +R A G RLS + A A+ Y + + A A + R + + FGGR T+WGLLG LK G + R+T S GGG SG+
Sbjct: 1 MAKTMSNPWILPAVKAALGGKDTGGLTRASSSMSGGCQDLRPKLVQVIRGSSRHKYLEVSDKESRLAAFITPDAHLAFKKAMPQISLAGLGTCIIKLERWLVSHQPLAFDSATGPCLAHEL---HGEDVFSFAPLCLQVSQFSVVATERGQSTYGAPHSVNDRPEIKSLYRELDTNALMMLLARHQGLPRLPDSSGKDVLPEPIGNKRPVTMEEVEYMLRCEEEEREERIAGASGITAEGAKAMGGPASHVAGTVRGEEHRPQQEGQWPRCPTPQGGSRSSRPQRAQEDDHLAPTSLRHALESSAGQARLRGRDGEGVGGKAMAGGPSRGVEEVRSPRKGDENVLHEEQIAKGGGNGGISQGEGEMASQFGASPLRNFETQDMEEEEEEEEE----EPLPPLVEAIRVSPTRSTRRSTAEYTPTSRKRAREEHPGKGEGQGVEAPTALQKGEERR----ASRSNMDAGQGLSQ-----SEEPPGAGGTGKEGGEASPWRAGRDKTEGHRGAIQAGTPSETNDLRALGAPPPPRIYPSCHL-----GAETVAIELQTQI----FSQTQVEFTQ------VEVPEEGEGRDINAED----VLRRYSPPVSPDASDRERRA--------ASGSLAVEGRLSLSSPRAPPASTGSYASGREA--GAKSDRREEQGNLLAAARPFGGRSTVWGLLGFLKAGDPPAAGKSRRTLQGARASLGGGDSGK 677
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G01410.1 ID=NO09G01410.1|Name=NO09G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2685bp AACGCAGCCTTTTCATGCACTTCCTTTTGACCAACGCCGCGCCTCACCCA CATCCTTCTCGCCTGCACAGAAGCATACAGGCTGTGCGTGCTTAAGTTCA TCGTTGTTGTCGAGGTGCTGGTGCTTGTTTTTGCCCATGTACTTGCGTGG CTTCCTCTTGTCTCCGAGCAGCTCATTGTGCATTGAGCGATAACTTGACA GGGCATTCACCCTCCACTTCCCCCAACTCAACACAACGACAGCCACCATG GCCAAGACGATGTCCACCCCGTGGATTTTGCCGGCTGTCAAGGCGGCGTT GGGCGCAGAAGACTCGGCGGGGAGAGTCGGAGCTAGCAATAACAAGCCTG CTGGCCCCTCGGACCACCGGCCCAAGGTGGTCCAAGTCGTCCGCGGCTCC ACCCAGCACGGCTACCTAGAAGTGAGTGACAAGGAAAACAAGATTGCGGT CTTCCTCACTCCGGACGCCCGTCAATCCTTCCACGAGGCCATGCCACAGA AAAGCTTGTCGGGCCTCAGCACCTGCATGGTCAAGCTCGAAAAGTGGCTT GTCTCATATCTACCCCTCGCTGTGGACTCAGCCACAGGAAGCCTCGCCCA CCATTTGCCCCAAAACACAAAGCAAGATGCGCATACGTTTGCGCCATTAT GTTTGGTGGCCACAAAGTTCACCGTGGTTTTGTCAGAGAGGGGGCAATCG ACCTATGGCAACCCTCGAAGTATCAACACCATTACCGAAATAAAGAGGCT GTATCGCGAGCTGGACCCTAGCGCCCTCATAACCAAGCTTGCCACCGGGC AAGGCCTGCCTCGCCTTCCTGACAGTACTGGCGCGGATGCTCTTCCAGAT CCTGTGGATAATCAACATCCTGTCACGCTTACCGAGGTAAAGGCAATGCT TGCTCAGGACGCGGCTTACCCCGAGAGGCGTATTGCTGGCGTGAACGTGG CTACAGCCGCCGCAGCGGCGGCTGCTGCTGCGGCTGCTGTTGTTGCAAAG AGAGCGGTAGGTGCAGTAGAAGTATTGGGAGGAGCGGGCAACGGAGCGCA TGCAATCAATGGGGGAGCAGCAGCAGGACAGCAAATGCAAACACCAGCCG CAGCAGAGACGGGTCGAGCTGGAGCAGCAGATGCAGCAACTGTAGCAGAA AGAGCAGGAGCAATTGCAGCGATAGCCTCGCAAGCAGAAGACGAAGAGGG AGAGCAGCAAGAAGAAGGAGAGGCAGAGGGGAAAGAAATCGACGAGGACG ATCGGTTGGCTTCTCAATTTGGCGCGTCGCCTGCCCGGGAATTTGAAACG CAACGTCAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAATCTTATGA GTCTGTGCCTGTGCTCATCCCTCCCCCGAGTCCGGCGCGTTCGACACGAA GCGCGGCGAGCATCAAGGCCACCAGCCCTACACGACAGATGCAGCAGCAG CAGCAGGAGGAGGAGGCGGAGCAGCAACAGCAGCAGGAGCAGCGGCAAGA ATCCCCAAGCCGACGACGAAGGACTGTCGCTGCCCCCGTTGATGATGATG CCAAGGAAGGAAAGAATGAAGAAAGCAAGGCCCTGTCACCAAAGCCAGGA GGTCAGGAAGAGGAGGGGAAGAAGGAGGGCGAGGGTATCTCCACACGTTC TCCAAGGGCGCAAATCCTTCAGGCGGGTCCCGGTTCCCCTCATCCACCCT CTCCAGCACAGCGGACGTCCCTGCGACGCAACAAGAAACAACAGGATAGT CAGGCTTGGGCCATGCAAACACAAGCGTTCTCTCAAGATTTCTCGCAGAC GCAAGTGGACGAATCTCAACAGGAGGAAGAAGAGTTGGAAGAGGAGGAAG AGGAGGAGGAAGAGAAGGAGGAAGAGGAGGAGGACGAACTGAAAATGGTG CTTCGTCGACCTTCCGTCCCCTTTCCTTCATCCCCTTCCCCGGGCAAGCG TCCTGCGCCCACTGTATTAGCTGGAGGAGGAGGAGGAGGTCCTTCGCCTA CTCGTGTCCGCCTGTCAGCACCCACCTCAGCTGCTGCTGCTGCTACTGCA CGGCTTTACCCTGCCGCAAAAGCAGCAGCTACAGCAGCATCAGCATGCAG GAGTACTAGTAGTAGTACGCCTGTTGATACTAGCAGCCTATTTGGGGGTC GGCCGACCATTTGGGGGTTGTTGGGTATGTTGAAGCCCGGGGGAAGCTCG CCTTCGCGCAATTTTAGGAAAACTGGTTGTAGTGGAGGGGGAGGAGGGAG TGGAAGAGTGTGAGGGGATTCCTTTTGCTTTGGAATAAGCCGAGAATCTT AATCCCAGGTAATTCGAGTGATGTGTTGAAGATAAGAAGAGGAGGAGGTA GGGGAGGAGCAGGTTGGGAGGCGGAGGGATCGGTCGACTTCGAGAAAAAG GGAAACGTGGTGGAATGGGAAGTATAATAATATGGAGGGGAGTGTATGAT AGAAGGAAGTAAGAGAAACCCCAATACCAACTTGGAGAAGACGAGGAAAA GAAGTCGATAAGAAAAGGACACGAGACCTCCCTCATTCCATTCATTTCCA TTAGACCACCCGTAATGGTAACAAGGAAAAATATGTGCCCCCCAGCAAAC TCGAAATGGAGGACCAAAAAGTTGAAAGAAGAAGAATGAAACCTACCCCC CAAAAAAGAATATACCTAATACCTTTGAATACCTA back to topprotein sequence of NO09G01410.1 >NO09G01410.1-protein ID=NO09G01410.1-protein|Name=NO09G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=672bp MAKTMSTPWILPAVKAALGAEDSAGRVGASNNKPAGPSDHRPKVVQVVRG STQHGYLEVSDKENKIAVFLTPDARQSFHEAMPQKSLSGLSTCMVKLEKW LVSYLPLAVDSATGSLAHHLPQNTKQDAHTFAPLCLVATKFTVVLSERGQ STYGNPRSINTITEIKRLYRELDPSALITKLATGQGLPRLPDSTGADALP DPVDNQHPVTLTEVKAMLAQDAAYPERRIAGVNVATAAAAAAAAAAAVVA KRAVGAVEVLGGAGNGAHAINGGAAAGQQMQTPAAAETGRAGAADAATVA ERAGAIAAIASQAEDEEGEQQEEGEAEGKEIDEDDRLASQFGASPAREFE TQRQEEEEEEEEEEESYESVPVLIPPPSPARSTRSAASIKATSPTRQMQQ QQQEEEAEQQQQQEQRQESPSRRRRTVAAPVDDDAKEGKNEESKALSPKP GGQEEEGKKEGEGISTRSPRAQILQAGPGSPHPPSPAQRTSLRRNKKQQD SQAWAMQTQAFSQDFSQTQVDESQQEEEELEEEEEEEEEKEEEEEDELKM VLRRPSVPFPSSPSPGKRPAPTVLAGGGGGGPSPTRVRLSAPTSAAAAAT ARLYPAAKAAATAASACRSTSSSTPVDTSSLFGGRPTIWGLLGMLKPGGS SPSRNFRKTGCSGGGGGSGRV* back to topmRNA from alignment at chr9:454085..456769+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G01410.1 ID=NO09G01410.1|Name=NO09G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2685bp|location=Sequence derived from alignment at chr9:454085..456769+ (Nannochloropsis oceanica) AACGCAGCCTTTTCATGCACTTCCTTTTGACCAACGCCGCGCCTCACCCA
CATCCTTCTCGCCTGCACAGAAGCATACAGGCTGTGCGTGCTTAAGTTCA
TCGTTGTTGTCGAGGTGCTGGTGCTTGTTTTTGCCCATGTACTTGCGTGG
CTTCCTCTTGTCTCCGAGCAGCTCATTGTGCATTGAGCGATAACTTGACA
GGGCATTCACCCTCCACTTCCCCCAACTCAACACAACGACAGCCACCATG
GCCAAGACGATGTCCACCCCGTGGATTTTGCCGGCTGTCAAGGCGGCGTT
GGGCGCAGAAGACTCGGCGGGGAGAGTCGGAGCTAGCAATAACAAGCCTG
CTGGCCCCTCGGACCACCGGCCCAAGGTGGTCCAAGTCGTCCGCGGCTCC
ACCCAGCACGGCTACCTAGAAGTGAGTGACAAGGAAAACAAGATTGCGGT
CTTCCTCACTCCGGACGCCCGTCAATCCTTCCACGAGGCCATGCCACAGA
AAAGCTTGTCGGGCCTCAGCACCTGCATGGTCAAGCTCGAAAAGTGGCTT
GTCTCATATCTACCCCTCGCTGTGGACTCAGCCACAGGAAGCCTCGCCCA
CCATTTGCCCCAAAACACAAAGCAAGATGCGCATACGTTTGCGCCATTAT
GTTTGGTGGCCACAAAGTTCACCGTGGTTTTGTCAGAGAGGGGGCAATCG
ACCTATGGCAACCCTCGAAGTATCAACACCATTACCGAAATAAAGAGGCT
GTATCGCGAGCTGGACCCTAGCGCCCTCATAACCAAGCTTGCCACCGGGC
AAGGCCTGCCTCGCCTTCCTGACAGTACTGGCGCGGATGCTCTTCCAGAT
CCTGTGGATAATCAACATCCTGTCACGCTTACCGAGGTAAAGGCAATGCT
TGCTCAGGACGCGGCTTACCCCGAGAGGCGTATTGCTGGCGTGAACGTGG
CTACAGCCGCCGCAGCGGCGGCTGCTGCTGCGGCTGCTGTTGTTGCAAAG
AGAGCGGTAGGTGCAGTAGAAGTATTGGGAGGAGCGGGCAACGGAGCGCA
TGCAATCAATGGGGGAGCAGCAGCAGGACAGCAAATGCAAACACCAGCCG
CAGCAGAGACGGGTCGAGCTGGAGCAGCAGATGCAGCAACTGTAGCAGAA
AGAGCAGGAGCAATTGCAGCGATAGCCTCGCAAGCAGAAGACGAAGAGGG
AGAGCAGCAAGAAGAAGGAGAGGCAGAGGGGAAAGAAATCGACGAGGACG
ATCGGTTGGCTTCTCAATTTGGCGCGTCGCCTGCCCGGGAATTTGAAACG
CAACGTCAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAATCTTATGA
GTCTGTGCCTGTGCTCATCCCTCCCCCGAGTCCGGCGCGTTCGACACGAA
GCGCGGCGAGCATCAAGGCCACCAGCCCTACACGACAGATGCAGCAGCAG
CAGCAGGAGGAGGAGGCGGAGCAGCAACAGCAGCAGGAGCAGCGGCAAGA
ATCCCCAAGCCGACGACGAAGGACTGTCGCTGCCCCCGTTGATGATGATG
CCAAGGAAGGAAAGAATGAAGAAAGCAAGGCCCTGTCACCAAAGCCAGGA
GGTCAGGAAGAGGAGGGGAAGAAGGAGGGCGAGGGTATCTCCACACGTTC
TCCAAGGGCGCAAATCCTTCAGGCGGGTCCCGGTTCCCCTCATCCACCCT
CTCCAGCACAGCGGACGTCCCTGCGACGCAACAAGAAACAACAGGATAGT
CAGGCTTGGGCCATGCAAACACAAGCGTTCTCTCAAGATTTCTCGCAGAC
GCAAGTGGACGAATCTCAACAGGAGGAAGAAGAGTTGGAAGAGGAGGAAG
AGGAGGAGGAAGAGAAGGAGGAAGAGGAGGAGGACGAACTGAAAATGGTG
CTTCGTCGACCTTCCGTCCCCTTTCCTTCATCCCCTTCCCCGGGCAAGCG
TCCTGCGCCCACTGTATTAGCTGGAGGAGGAGGAGGAGGTCCTTCGCCTA
CTCGTGTCCGCCTGTCAGCACCCACCTCAGCTGCTGCTGCTGCTACTGCA
CGGCTTTACCCTGCCGCAAAAGCAGCAGCTACAGCAGCATCAGCATGCAG
GAGTACTAGTAGTAGTACGCCTGTTGATACTAGCAGCCTATTTGGGGGTC
GGCCGACCATTTGGGGGTTGTTGGGTATGTTGAAGCCCGGGGGAAGCTCG
CCTTCGCGCAATTTTAGGAAAACTGGTTGTAGTGGAGGGGGAGGAGGGAG
TGGAAGAGTGTGAGGGGATTCCTTTTGCTTTGGAATAAGCCGAGAATCTT
AATCCCAGGTAATTCGAGTGATGTGTTGAAGATAAGAAGAGGAGGAGGTA
GGGGAGGAGCAGGTTGGGAGGCGGAGGGATCGGTCGACTTCGAGAAAAAG
GGAAACGTGGTGGAATGGGAAGTATAATAATATGGAGGGGAGTGTATGAT
AGAAGGAAGTAAGAGAAACCCCAATACCAACTTGGAGAAGACGAGGAAAA
GAAGTCGATAAGAAAAGGACACGAGACCTCCCTCATTCCATTCATTTCCA
TTAGACCACCCGTAATGGTAACAAGGAAAAATATGTGCCCCCCAGCAAAC
TCGAAATGGAGGACCAAAAAGTTGAAAGAAGAAGAATGAAACCTACCCCC
CAAAAAAGAATATACCTAATACCTTTGAATACCTA back to topCoding sequence (CDS) from alignment at chr9:454085..456769+ >NO09G01410.1 ID=NO09G01410.1|Name=NO09G01410.1|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at chr9:454085..456769+ (Nannochloropsis oceanica) ATGGCCAAGACGATGTCCACCCCGTGGATTTTGCCGGCTGTCAAGGCGGC GTTGGGCGCAGAAGACTCGGCGGGGAGAGTCGGAGCTAGCAATAACAAGC CTGCTGGCCCCTCGGACCACCGGCCCAAGGTGGTCCAAGTCGTCCGCGGC TCCACCCAGCACGGCTACCTAGAAGTGAGTGACAAGGAAAACAAGATTGC GGTCTTCCTCACTCCGGACGCCCGTCAATCCTTCCACGAGGCCATGCCAC AGAAAAGCTTGTCGGGCCTCAGCACCTGCATGGTCAAGCTCGAAAAGTGG CTTGTCTCATATCTACCCCTCGCTGTGGACTCAGCCACAGGAAGCCTCGC CCACCATTTGCCCCAAAACACAAAGCAAGATGCGCATACGTTTGCGCCAT TATGTTTGGTGGCCACAAAGTTCACCGTGGTTTTGTCAGAGAGGGGGCAA TCGACCTATGGCAACCCTCGAAGTATCAACACCATTACCGAAATAAAGAG GCTGTATCGCGAGCTGGACCCTAGCGCCCTCATAACCAAGCTTGCCACCG GGCAAGGCCTGCCTCGCCTTCCTGACAGTACTGGCGCGGATGCTCTTCCA GATCCTGTGGATAATCAACATCCTGTCACGCTTACCGAGGTAAAGGCAAT GCTTGCTCAGGACGCGGCTTACCCCGAGAGGCGTATTGCTGGCGTGAACG TGGCTACAGCCGCCGCAGCGGCGGCTGCTGCTGCGGCTGCTGTTGTTGCA AAGAGAGCGGTAGGTGCAGTAGAAGTATTGGGAGGAGCGGGCAACGGAGC GCATGCAATCAATGGGGGAGCAGCAGCAGGACAGCAAATGCAAACACCAG CCGCAGCAGAGACGGGTCGAGCTGGAGCAGCAGATGCAGCAACTGTAGCA GAAAGAGCAGGAGCAATTGCAGCGATAGCCTCGCAAGCAGAAGACGAAGA GGGAGAGCAGCAAGAAGAAGGAGAGGCAGAGGGGAAAGAAATCGACGAGG ACGATCGGTTGGCTTCTCAATTTGGCGCGTCGCCTGCCCGGGAATTTGAA ACGCAACGTCAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAATCTTA TGAGTCTGTGCCTGTGCTCATCCCTCCCCCGAGTCCGGCGCGTTCGACAC GAAGCGCGGCGAGCATCAAGGCCACCAGCCCTACACGACAGATGCAGCAG CAGCAGCAGGAGGAGGAGGCGGAGCAGCAACAGCAGCAGGAGCAGCGGCA AGAATCCCCAAGCCGACGACGAAGGACTGTCGCTGCCCCCGTTGATGATG ATGCCAAGGAAGGAAAGAATGAAGAAAGCAAGGCCCTGTCACCAAAGCCA GGAGGTCAGGAAGAGGAGGGGAAGAAGGAGGGCGAGGGTATCTCCACACG TTCTCCAAGGGCGCAAATCCTTCAGGCGGGTCCCGGTTCCCCTCATCCAC CCTCTCCAGCACAGCGGACGTCCCTGCGACGCAACAAGAAACAACAGGAT AGTCAGGCTTGGGCCATGCAAACACAAGCGTTCTCTCAAGATTTCTCGCA GACGCAAGTGGACGAATCTCAACAGGAGGAAGAAGAGTTGGAAGAGGAGG AAGAGGAGGAGGAAGAGAAGGAGGAAGAGGAGGAGGACGAACTGAAAATG GTGCTTCGTCGACCTTCCGTCCCCTTTCCTTCATCCCCTTCCCCGGGCAA GCGTCCTGCGCCCACTGTATTAGCTGGAGGAGGAGGAGGAGGTCCTTCGC CTACTCGTGTCCGCCTGTCAGCACCCACCTCAGCTGCTGCTGCTGCTACT GCACGGCTTTACCCTGCCGCAAAAGCAGCAGCTACAGCAGCATCAGCATG CAGGAGTACTAGTAGTAGTACGCCTGTTGATACTAGCAGCCTATTTGGGG GTCGGCCGACCATTTGGGGGTTGTTGGGTATGTTGAAGCCCGGGGGAAGC TCGCCTTCGCGCAATTTTAGGAAAACTGGTTGTAGTGGAGGGGGAGGAGG GAGTGGAAGAGTGTGA back to top
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