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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:447800..449931 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G01380.2 vs.
Match: EWM27656.1 (ap-1 complex subunit mu-1-like isoform 1 [Nannochloropsis gaditana]) HSP 1 Score: 786.6 bits (2030), Expect = 4.000e-224 Identity = 391/405 (96.54%), Postives = 399/405 (98.52%), Query Frame = 0
Query: 25 SLRFAIYLQEKEESEQRPVFTEDGYTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIVGAIRMKSFLSGMPELKLGLNDKLMFEAAGRSVSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWSIKQFHGQREYLMRAHFGLPSIAAEGSSTSAAEKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDVFMRMGT 430
S RFA YLQEKEESEQRP+FTE+G TFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEI+GAIRMKSFLSGMPELKLGLNDKLMFEA+GR+VSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVW IKQFHGQREYLMRAHFGLPSIAAEGSS +A EKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDV++RMGT
Sbjct: 30 SERFATYLQEKEESEQRPIFTEEGCTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIIGAIRMKSFLSGMPELKLGLNDKLMFEASGRAVSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWGIKQFHGQREYLMRAHFGLPSIAAEGSSANATEKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDVYLRMGT 434
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G01380.2 ID=NO09G01380.2|Name=NO09G01380.2|organism=Nannochloropsis oceanica|type=mRNA|length=1957bp ACAGGCAAGGATCACCACTCGAAACAAAGGCTAACCCACCCGCGCCTCAA GTCTCCGCGAACACCTGCCTCCTTCTCCTTCCGGACCCCTCGGCCGCCAC AAGGAGCCCACCATGGTGGCCTCGGCGCTTTTCATCATGGATCTCAAGGG GAAGATCATCATCTCCCGCAACTTCAGGGGTGATATCCCCCAGACTGTCT CGGAAAGGTAAAGCGAGTAAGGGAGGGCAGGGTTGCTGCTTCTGCTGATG ATTACGAGGGGGCAAGCGGGGCTGTGACATCCGTAGGGACAGCAAGAGGG CGGCTCCTGCAGCGCTTGTTTTTGCTTTGTCTTTCACGGTCCGGAGCGAG TTTTAGAGCGCCTGTCTTATGCCTCTGCGAGCTCTCCGTGCCCTTCCAGC TCTCATCCACCCATCCTTCTTTCTCCCCTTACTCCCCCCGTCCCTTAGAT TCGCCATATACCTCCAAGAAAAGGAAGAATCGGAGCAACGGCCCGTCTTC ACAGAAGACGGCTACACTTTTGCCTATCTCAAGTACAACAATCTCTTTCT TCTGAGTGTGACCAAACGCAATTCCAACGTGGCTTTGATGCTTGTCTACC TCTCCCGGTTGGTCGACGTGTTCAAAGAGTATTTTGGGGAGTTGGAAGAA GAAAGCATCCGTGACAACTTTGTCATTATTTATGAGTTAATGGACGAGAC GATGGACTTTGGCTATCCCCAGACAACGGAGGCGAAGATTCTGAGAGAGT ACATCACTCAAGAAGGGAATAGGCTGGAAGCCGCCCCACGGCCGCCGGTG GCGTTGACCAACACGGTGTCATGGCGCTCAGAAGGGATCAAACATCGGAA GAACGAGATCTTCTTGGACGTCATCGAAAAATTGAACTTGTTGGTGTCAG CGAACGGGACCGTGTTGCACTCGGAGATTGTTGGGGCGATCCGGATGAAG TCCTTCTTGAGTGGCATGCCCGAGTTGAAGCTGGGTTTGAATGATAAGCT GATGTTCGAGGCGGCCGGGCGGTCGGTCTCGGCCTCGACGAAAGGGAAGG CGATCGAGCTGGAGGACATCAAGTTTCATCAATGTGTCAGGCTGGCGCGC TTCGAGAACGATCGAACCATTTCCTTCATCCCGCCGGATGGGGAGTTTGA CCTGATGACCTACCGCTTGTCGACGCAGGTGAAGCCCTTGATATGGGTGG AGGCGGTAGTGGAGCCTCATTCTCACTCTAGAATCGAGTATATGATCAAG GCCAAGAGTCAGTTTAAGTCCCGCTCCATCGCCAACAACGTGGATATCAT TATCCCCGTCCCCTCTGATGTGGACACGCCCTCCTTCAAAGCCTCCATTG GCACCGTCACATACCTCCCCGACAAGGACGCCATCGTCTGGAGCATCAAG CAATTCCACGGTCAACGTGAATATCTTATGCGCGCTCATTTTGGTTTGCC TTCCATTGCCGCGGAAGGGTCCTCCACCAGTGCCGCGGAGAAGTGTTGGA AGAAGCCGGTGCAGATTAAATTTGAGATTCCTTATTTTACCGTTTCGGGT ATCCAGGTTCGATACTTGAAGATTATAGAGAAGAGCGGTTTTGCGGCTTT GCCTTGGGTGCGATATATAACTTGTGCGGGGGATGTTTTTATGCGCATGG GGACTTGAGATGTGGGGTGGAGGGTGGAAGGAGGAGAGGAGGGGGTGGGT GTAGGAGTAGGTGTGGGGTTGGAGGAAATTGTGTGGAGAGGGATGTTTGG AGCGAAAGAGGACTTGGTCGAAATGTACAACTAAGACGAACGAACGGAAG AGACAGTAACAGATGGGAAAAAAACGCATAATGAAGCTGGGAGGTTTTTG CGGCATTGAAGATGATTCCGTTGAGACCGATTGAGACGTATCCCTAGTGT GAGACGATCTCTCGCTCCAGCTCTTACCCCTAGAAGAAGTAAACGTTATG TGTCAAT back to topprotein sequence of NO09G01380.2 >NO09G01380.2-protein ID=NO09G01380.2-protein|Name=NO09G01380.2|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp MPLRALRALPALIHPSFFLPLLPPSLRFAIYLQEKEESEQRPVFTEDGYT FAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDN FVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTV SWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIVGAIRMKSFLSGM PELKLGLNDKLMFEAAGRSVSASTKGKAIELEDIKFHQCVRLARFENDRT ISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFK SRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWSIKQFHGQR EYLMRAHFGLPSIAAEGSSTSAAEKCWKKPVQIKFEIPYFTVSGIQVRYL KIIEKSGFAALPWVRYITCAGDVFMRMGT* back to topmRNA from alignment at chr9:447800..449931- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G01380.2 ID=NO09G01380.2|Name=NO09G01380.2|organism=Nannochloropsis oceanica|type=mRNA|length=2132bp|location=Sequence derived from alignment at chr9:447800..449931- (Nannochloropsis oceanica) ACAGGCAAGGATCACCACTCGAAACAAAGGCTAACCCACCCGCGCCTCAA
GTCTCCGCGAACACCTGCCTCCTTCTCCTTCCGGACCCCTCGGCCGCCAC
AAGGAGCCCACCATGGTGGCCTCGGCGCTTTTCATCATGGATCTCAAGGG
GAAGATCATCATCTCCCGCAACTTCAGGGGTGATATCCCCCAGACTGTCT
CGGAAAGGTAAAGCGAGTAAGGGAGGGCAGGGTTGCTGCTTCTGCTGATG
ATTACGAGGGGGCAAGCGGGGCTGTGACATCCGTAGGGACAGCAAGAGGG
CGGCTCCTGCAGCGCTTGTTTTTGCTTTGTCTTTCACGGTCCGGAGCGAG
TTTTAGAGCGCCTGTCTTATGCCTCTGCGAGCTCTCCGTGCCCTTCCAGC
TCTCATCCACCCATCCTTCTTTCTCCCCTTACTCCCCCCGTCCCTTAGAT
TCGCCATATACCTCCAAGAAAAGGAAGAATCGGAGCAACGGCCCGTCTTC
ACAGAAGACGGCTACACTTTTGCCTATCTCAAGTACAACAATCTCTTTCT
TCTGAGTGTGACCAAACGCAATTCCAACGTGGCTTTGATGCTTGTCTACC
TCTCCCGGTTGGTCGACGTGTTCAAAGAGTATTTTGGGGAGTTGGAAGAA
GAAAGCATCCGTGACAACTTTGTCATTATTTATGAGTTAATGGACGAGAC
GATGGACTTTGGCTATCCCCAGACAACGGAGGCGAAGATTCTGAGAGAGT
ACATCACTCAAGAAGGGAATAGGCTGGAAGCCGCCCCACGGCCGCCGGTG
GCGTTGACCAACACGGTGTCATGGCGCTCAGAAGGGATCAAACATCGGAA
GAACGAGATCTTCTTGGACGTCATCGAAAAATTGAACTTGTTGGTGTCAG
CGAACGGGACCGTGTTGCACTCGGAGATTGTTGGGGCGATCCGGATGAAG
TCCTTCTTGAGTGGCATGCCCGAGTTGAAGCTGGGTTTGAATGATAAGCT
GATGTTCGAGGCGGCCGGGCGGTCGGTCTCGGCCTCGACGAAAGGGAAGG
CGATCGAGCTGGAGGACATCAAGTTTCATCAATGTGTCAGGCTGGCGCGC
TTCGAGAACGATCGAACCATTTCCTTCATCCCGCCGGATGGGGAGTTTGA
CCTGATGACCTACCGCTTGTCGACGCAGGTGAAGCCCTTGATATGGGTGG
AGGCGGTAGTGGAGCCTCATTCTCACTCTAGAATCGAGTATATGATCAAG
GTGAGGAAGAACGGAAGACGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GACGTGATGGTGAGAGTATGTTAAGATGGATTTCGTACCTTGAGTGTCTT
TGTCCACGGCGCCCATGACACGCAAACACACTTACACCATTTTCTTGTCT
TTTCCTTTCTCCAATCAATCCACAGGCCAAGAGTCAGTTTAAGTCCCGCT
CCATCGCCAACAACGTGGATATCATTATCCCCGTCCCCTCTGATGTGGAC
ACGCCCTCCTTCAAAGCCTCCATTGGCACCGTCACATACCTCCCCGACAA
GGACGCCATCGTCTGGAGCATCAAGCAATTCCACGGTCAACGTGAATATC
TTATGCGCGCTCATTTTGGTTTGCCTTCCATTGCCGCGGAAGGGTCCTCC
ACCAGTGCCGCGGAGAAGTGTTGGAAGAAGCCGGTGCAGATTAAATTTGA
GATTCCTTATTTTACCGTTTCGGGTATCCAGGTTCGATACTTGAAGATTA
TAGAGAAGAGCGGTTTTGCGGCTTTGCCTTGGGTGCGATATATAACTTGT
GCGGGGGATGTTTTTATGCGCATGGGGACTTGAGATGTGGGGTGGAGGGT
GGAAGGAGGAGAGGAGGGGGTGGGTGTAGGAGTAGGTGTGGGGTTGGAGG
AAATTGTGTGGAGAGGGATGTTTGGAGCGAAAGAGGACTTGGTCGAAATG
TACAACTAAGACGAACGAACGGAAGAGACAGTAACAGATGGGAAAAAAAC
GCATAATGAAGCTGGGAGGTTTTTGCGGCATTGAAGATGATTCCGTTGAG
ACCGATTGAGACGTATCCCTAGTGTGAGACGATCTCTCGCTCCAGCTCTT
ACCCCTAGAAGAAGTAAACGTTATGTGTCAAT back to topCoding sequence (CDS) from alignment at chr9:447800..449931- >NO09G01380.2 ID=NO09G01380.2|Name=NO09G01380.2|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr9:447800..449931- (Nannochloropsis oceanica) ATGCCTCTGCGAGCTCTCCGTGCCCTTCCAGCTCTCATCCACCCATCCTT CTTTCTCCCCTTACTCCCCCCGTCCCTTAGATTCGCCATATACCTCCAAG AAAAGGAAGAATCGGAGCAACGGCCCGTCTTCACAGAAGACGGCTACACT TTTGCCTATCTCAAGTACAACAATCTCTTTCTTCTGAGTGTGACCAAACG CAATTCCAACGTGGCTTTGATGCTTGTCTACCTCTCCCGGTTGGTCGACG TGTTCAAAGAGTATTTTGGGGAGTTGGAAGAAGAAAGCATCCGTGACAAC TTTGTCATTATTTATGAGTTAATGGACGAGACGATGGACTTTGGCTATCC CCAGACAACGGAGGCGAAGATTCTGAGAGAGTACATCACTCAAGAAGGGA ATAGGCTGGAAGCCGCCCCACGGCCGCCGGTGGCGTTGACCAACACGGTG TCATGGCGCTCAGAAGGGATCAAACATCGGAAGAACGAGATCTTCTTGGA CGTCATCGAAAAATTGAACTTGTTGGTGTCAGCGAACGGGACCGTGTTGC ACTCGGAGATTGTTGGGGCGATCCGGATGAAGTCCTTCTTGAGTGGCATG CCCGAGTTGAAGCTGGGTTTGAATGATAAGCTGATGTTCGAGGCGGCCGG GCGGTCGGTCTCGGCCTCGACGAAAGGGAAGGCGATCGAGCTGGAGGACA TCAAGTTTCATCAATGTGTCAGGCTGGCGCGCTTCGAGAACGATCGAACC ATTTCCTTCATCCCGCCGGATGGGGAGTTTGACCTGATGACCTACCGCTT GTCGACGCAGGTGAAGCCCTTGATATGGGTGGAGGCGGTAGTGGAGCCTC ATTCTCACTCTAGAATCGAGTATATGATCAAGGCCAAGAGTCAGTTTAAG TCCCGCTCCATCGCCAACAACGTGGATATCATTATCCCCGTCCCCTCTGA TGTGGACACGCCCTCCTTCAAAGCCTCCATTGGCACCGTCACATACCTCC CCGACAAGGACGCCATCGTCTGGAGCATCAAGCAATTCCACGGTCAACGT GAATATCTTATGCGCGCTCATTTTGGTTTGCCTTCCATTGCCGCGGAAGG GTCCTCCACCAGTGCCGCGGAGAAGTGTTGGAAGAAGCCGGTGCAGATTA AATTTGAGATTCCTTATTTTACCGTTTCGGGTATCCAGGTTCGATACTTG AAGATTATAGAGAAGAGCGGTTTTGCGGCTTTGCCTTGGGTGCGATATAT AACTTGTGCGGGGGATGTTTTTATGCGCATGGGGACTTGA back to top
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