NO09G01350.1, NO09G01350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01350.1
Unique NameNO09G01350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2050
Alignment locationchr9:441845..443990 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:441845..443990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G01350.1 vs.
Match: EWM27639.1 (hypothetical protein Naga_100059g9 [Nannochloropsis gaditana])

HSP 1 Score: 531.9 bits (1369), Expect = 2.700e-147
Identity = 326/657 (49.62%), Postives = 436/657 (66.36%), Query Frame = 0
Query:    1 MASSTASAMPAFFSSRPASDDEASARASSPASTPPYSFATNLLGAFGAVRKKNVQTLKVLEELKTMVKNRASVEEAYSQQLTRVVANHTHGLRHLGEKLTRKAGGGGLSEVEAAKEASLTASHSTFRECVETLKADMLNKAVQRKQLSASILTDVFGPVEEIFNQLAAESKDLEDTISALAKEGRGLEARYRSTHKKHEQAVQLATTTSNFLLEQGHILPTVDIHALYRRHTATSRDNSPPPSSPFDLRKEELSSMVAGSPRLLSGALTNIAKKDLTAWLLPSGKDRQQDLQSTARDNMELAVLLRFACRDRYNELASFARTATHTLQKVLCQYQLCEERSVEELAVMLRKQVVFESSCLANEQYEVQLMFKVIEAVDRDRDLEAFIHAHNVPFPGADVSNTLQSLGLSLSSPLPAPPPPYEGAASTITNTAPCHSSSFDSSVLDRGDLPNLSSPYPHVVPATTVLCLLRGGLSSSRTPTPPLPPFPSTLSSLRIAKKLSPFPSICSLSMTSTPSSKSPSPLHLVSSSAPTSSSISSRTIVFPP-PSDDSSNSPAPTSAEASRTVKPPTGSVRMQSNHFPLHLGAFDTLKSGLDDSEDEDEDEDKGFSS-QHDKPTAVGIV------ETDIRRNDAPSSLLPLKEVRTADGGVEYRL 650
            MAS+T         S+ ++ DE         S+PPYSFAT+LLG+F  VRK + QTLKVLEEL  M+K RA+VEE YSQQ+ R+V++HTHGLR LGE L RKAGG G++E ++  E S     STFRECVE+LKADMLN++VQRKQL+ +IL DVF P+E+I+++LA+ES+ LED +  L K+GR  E+RYRS HKK+EQAVQLAT   + L E+G  LP++DI  L++R++ +SR  SP   SPFDL+KE+ S+++AGSPR +S A T  AKKD+T WLLP  K R+ DL + A++++E+A L RFAC +R++EL++FAR A H LQ+VLC YQ CEER +E LAV+LRKQ+VFESSCLANEQ+E Q++FKVIEA+D+D+DLEAFIHAH VPFPGADV +TL+SLGL + +PLPAPP   E    +  +    H+S   + ++ R DLP+LSSP P VVPATTVL LL G LS+S TPT P P   STL +       S F S+ + S+      +SP    L S +A       S+ ++ PP P       P    A       PP  SVR+ +   P      D     ++D  +E E++D+GFS+ Q       G+       + +  R+   S L+PL+E+ TADGG+EYRL
Sbjct:    1 MASATTPDSLLSSPSKLSTHDE-----KIHTSSPPYSFATDLLGSFEKVRKNHTQTLKVLEELAIMIKGRAAVEEVYSQQMARLVSDHTHGLRRLGEALARKAGGMGVNEGDSVAETSSCTIESTFRECVESLKADMLNRSVQRKQLAKNILADVFAPLEDIYDRLASESRGLEDLLGTLTKQGRACESRYRSAHKKYEQAVQLATNACDILTEKGQSLPSLDIKLLHQRYSNSSRAASPATPSPFDLKKEDFSAILAGSPRKISEAFTQAAKKDITTWLLPLDKGRRDDLDTIAKNHLEMAELFRFACLERFDELSTFARRAAHELQRVLCHYQSCEERCIERLAVVLRKQIVFESSCLANEQFEAQIIFKVIEAMDKDKDLEAFIHAHKVPFPGADVDSTLKSLGL-IGNPLPAPPASPEEIGKSTCDENLLHASG--TVIVGREDLPHLSSPAPRVVPATTVLRLLGGNLSASGTPT-PTPHHSSTLRTTN-GNPFSDFSSMLNKSL------RSPLAAALSSKNAAPPPDAPSQVLMSPPVPEVGLEGLPFELQA-------PP--SVRLGNMVEPTQ-SLDDEGHDSVEDEIEEGENDDEGFSALQKHARRLRGVAKEYSPYQEEGNRSAISSPLIPLEEILTADGGIEYRL 631          
The following BLAST results are available for this feature:
BLAST of NO09G01350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27639.12.700e-14749.62hypothetical protein Naga_100059g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01350NO09G01350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01350.1NO09G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01350.1.cds1NO09G01350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01350.1.cds2NO09G01350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01350.1 ID=NO09G01350.1|Name=NO09G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2050bp
CAGAAGGCAAACAATGGCCTCGTCTACTGCGTCTGCGATGCCTGCCTTTT
TCAGCAGCCGCCCCGCCAGCGATGACGAAGCCTCTGCTCGTGCGTCTTCC
CCGGCCTCGACGCCACCCTATTCCTTCGCCACTAATCTGTTGGGCGCCTT
TGGGGCGGTCCGCAAAAAGAATGTCCAGACACTCAAGGTCTTGGAGGAGC
TCAAGACCATGGTCAAGAACCGGGCCTCCGTCGAAGAGGCCTATTCGCAG
CAATTGACCCGCGTCGTGGCCAACCACACCCACGGCCTGCGTCATCTGGG
CGAGAAACTAACACGCAAAGCAGGCGGGGGTGGGCTTAGCGAGGTGGAGG
CGGCCAAGGAGGCGAGTCTGACTGCCAGTCACAGCACATTTCGGGAGTGC
GTGGAGACCTTAAAGGCAGACATGCTCAACAAGGCCGTGCAACGCAAGCA
GCTTTCGGCAAGTATTCTCACCGATGTCTTTGGCCCAGTCGAAGAAATTT
TCAACCAACTGGCGGCGGAAAGCAAGGACTTGGAAGATACGATTTCAGCC
TTGGCGAAAGAGGGACGGGGGCTCGAGGCCAGGTACCGCTCCACGCACAA
GAAACACGAGCAGGCCGTCCAGCTCGCCACAACCACGAGCAATTTCTTAT
TGGAACAAGGTCATATCCTCCCAACCGTGGACATACATGCACTCTATCGA
CGGCATACGGCCACGTCCCGCGACAACAGTCCACCGCCCTCCTCACCTTT
TGACCTGAGGAAGGAGGAACTGAGCAGCATGGTCGCGGGTAGTCCTAGAC
TTCTCTCAGGTGCCCTCACTAATATAGCCAAGAAGGACCTTACCGCCTGG
CTTCTCCCCTCCGGCAAAGACCGTCAACAAGACCTACAATCCACCGCACG
GGACAACATGGAATTGGCTGTATTGCTTCGCTTTGCCTGTCGGGACCGCT
ACAACGAGCTTGCCAGCTTTGCTCGCACGGCCACTCACACCTTACAAAAG
GTATTATGTCAATATCAATTATGCGAGGAAAGGTCCGTGGAAGAGCTGGC
GGTGATGCTGCGGAAGCAGGTGGTGTTCGAGTCGAGTTGCTTGGCGAATG
AACAGTATGAGGTTCAACTTATGTTTAAGGTCATTGAAGCTGTTGATCGG
GACAGGGATTTAGAAGCCTTTATTCATGCGCACAATGTCCCCTTTCCCGG
CGCGGACGTAAGCAATACGCTCCAAAGCCTTGGATTGTCTCTCTCCTCCC
CCTTGCCTGCACCACCACCTCCTTATGAAGGTGCTGCTAGTACGATCACA
AACACTGCACCCTGTCATTCCTCCTCCTTTGACTCCTCGGTGTTGGATAG
GGGGGATCTGCCCAACCTCAGCAGCCCCTACCCCCACGTTGTGCCGGCTA
CAACAGTTCTCTGCCTGCTTCGCGGAGGCTTATCTAGCTCCCGCACTCCA
ACACCTCCTCTTCCACCTTTTCCCAGCACCTTATCCTCCCTGCGAATCGC
GAAAAAACTTTCTCCTTTTCCTTCTATTTGTTCTCTTTCCATGACGTCCA
CTCCTAGCAGTAAGAGTCCCTCGCCTCTTCATCTTGTTTCCTCCAGTGCC
CCTACCTCCTCTTCCATTTCGTCACGCACTATCGTCTTTCCTCCTCCCTC
CGATGATTCATCGAACTCACCTGCTCCTACATCTGCAGAAGCATCGAGAA
CAGTAAAGCCGCCAACCGGATCCGTGCGTATGCAATCAAACCATTTTCCA
CTTCATCTCGGTGCGTTTGACACTCTTAAATCCGGTCTAGACGATAGTGA
GGACGAGGACGAGGACGAGGATAAAGGATTCTCCTCGCAGCACGACAAGC
CGACGGCAGTAGGGATAGTAGAGACAGATATCAGGAGGAACGATGCACCC
TCTTCTCTTCTGCCCTTGAAGGAGGTCCGAACGGCGGATGGTGGAGTAGA
ATACCGGTTGTAGACGGTAGGTATGCATGGATGTGTACAAGGATCGAACA
TGTGGGGTTGAGGAAACAATTTGAGAAATAAGCGAAGAGCGAGATCGAGC
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protein sequence of NO09G01350.1

>NO09G01350.1-protein ID=NO09G01350.1-protein|Name=NO09G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=650bp
MASSTASAMPAFFSSRPASDDEASARASSPASTPPYSFATNLLGAFGAVR
KKNVQTLKVLEELKTMVKNRASVEEAYSQQLTRVVANHTHGLRHLGEKLT
RKAGGGGLSEVEAAKEASLTASHSTFRECVETLKADMLNKAVQRKQLSAS
ILTDVFGPVEEIFNQLAAESKDLEDTISALAKEGRGLEARYRSTHKKHEQ
AVQLATTTSNFLLEQGHILPTVDIHALYRRHTATSRDNSPPPSSPFDLRK
EELSSMVAGSPRLLSGALTNIAKKDLTAWLLPSGKDRQQDLQSTARDNME
LAVLLRFACRDRYNELASFARTATHTLQKVLCQYQLCEERSVEELAVMLR
KQVVFESSCLANEQYEVQLMFKVIEAVDRDRDLEAFIHAHNVPFPGADVS
NTLQSLGLSLSSPLPAPPPPYEGAASTITNTAPCHSSSFDSSVLDRGDLP
NLSSPYPHVVPATTVLCLLRGGLSSSRTPTPPLPPFPSTLSSLRIAKKLS
PFPSICSLSMTSTPSSKSPSPLHLVSSSAPTSSSISSRTIVFPPPSDDSS
NSPAPTSAEASRTVKPPTGSVRMQSNHFPLHLGAFDTLKSGLDDSEDEDE
DEDKGFSSQHDKPTAVGIVETDIRRNDAPSSLLPLKEVRTADGGVEYRL*
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mRNA from alignment at chr9:441845..443990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01350.1 ID=NO09G01350.1|Name=NO09G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2146bp|location=Sequence derived from alignment at chr9:441845..443990- (Nannochloropsis oceanica)
CAGAAGGCAAACAATGGCCTCGTCTACTGCGTCTGCGATGCCTGCCTTTT TCAGCAGCCGCCCCGCCAGCGATGACGAAGCCTCTGCTCGTGCGTCTTCC CCGGCCTCGACGCCACCCTATTCCTTCGCCACTAATCTGTTGGGCGCCTT TGGGGCGGTCCGCAAAAAGAATGTCCAGACACTCAAGGTCTTGGAGGAGC TCAAGACCATGGTCAAGAACCGGGCCTCCGTCGAAGAGGCCTATTCGCAG CAATTGACCCGCGTCGTGGCCAACCACACCCACGGCCTGCGTCATCTGGG CGAGAAACTAACACGCAAAGCAGGCGGGGGTGGGCTTAGCGAGGTGGAGG CGGCCAAGGAGGCGAGTCTGACTGCCAGTCACAGCACATTTCGGGAGTGC GTGGAGACCTTAAAGGCAGACATGCTCAACAAGGCCGTGCAACGCAAGCA GCTTTCGGCAAGTATTCTCACCGATGTCTTTGGCCCAGTCGAAGAAATTT TCAACCAACTGGCGGCGGAAAGCAAGGACTTGGAAGATACGATTTCAGCC TTGGCGAAAGAGGGACGGGGGCTCGAGGCCAGGTACCGCTCCACGCACAA GAAACACGAGCAGGCCGTCCAGCTCGCCACAACCACGAGCAATTTCTTAT TGGAACAAGGTCATATCCTCCCAACCGTGGACATACATGCACTCTATCGA CGGCATACGGCCACGTCCCGCGACAACAGTCCACCGCCCTCCTCACCTTT TGACCTGAGGAAGGAGGAACTGAGCAGCATGGTCGCGGGTAGTCCTAGAC TTCTCTCAGGTGCCCTCACTAATATAGCCAAGAAGGACCTTACGTGAGTG CATAATTAGGTTTGGGTCAAGCGTGCAGGATGGATATGGGTACCTCTCTG TTCTCCTCACCCTCCTACCACCGCCATTCCACAAAATAGCGCCTGGCTTC TCCCCTCCGGCAAAGACCGTCAACAAGACCTACAATCCACCGCACGGGAC AACATGGAATTGGCTGTATTGCTTCGCTTTGCCTGTCGGGACCGCTACAA CGAGCTTGCCAGCTTTGCTCGCACGGCCACTCACACCTTACAAAAGGTAT TATGTCAATATCAATTATGCGAGGAAAGGTCCGTGGAAGAGCTGGCGGTG ATGCTGCGGAAGCAGGTGGTGTTCGAGTCGAGTTGCTTGGCGAATGAACA GTATGAGGTTCAACTTATGTTTAAGGTCATTGAAGCTGTTGATCGGGACA GGGATTTAGAAGCCTTTATTCATGCGCACAATGTCCCCTTTCCCGGCGCG GACGTAAGCAATACGCTCCAAAGCCTTGGATTGTCTCTCTCCTCCCCCTT GCCTGCACCACCACCTCCTTATGAAGGTGCTGCTAGTACGATCACAAACA CTGCACCCTGTCATTCCTCCTCCTTTGACTCCTCGGTGTTGGATAGGGGG GATCTGCCCAACCTCAGCAGCCCCTACCCCCACGTTGTGCCGGCTACAAC AGTTCTCTGCCTGCTTCGCGGAGGCTTATCTAGCTCCCGCACTCCAACAC CTCCTCTTCCACCTTTTCCCAGCACCTTATCCTCCCTGCGAATCGCGAAA AAACTTTCTCCTTTTCCTTCTATTTGTTCTCTTTCCATGACGTCCACTCC TAGCAGTAAGAGTCCCTCGCCTCTTCATCTTGTTTCCTCCAGTGCCCCTA CCTCCTCTTCCATTTCGTCACGCACTATCGTCTTTCCTCCTCCCTCCGAT GATTCATCGAACTCACCTGCTCCTACATCTGCAGAAGCATCGAGAACAGT AAAGCCGCCAACCGGATCCGTGCGTATGCAATCAAACCATTTTCCACTTC ATCTCGGTGCGTTTGACACTCTTAAATCCGGTCTAGACGATAGTGAGGAC GAGGACGAGGACGAGGATAAAGGATTCTCCTCGCAGCACGACAAGCCGAC GGCAGTAGGGATAGTAGAGACAGATATCAGGAGGAACGATGCACCCTCTT CTCTTCTGCCCTTGAAGGAGGTCCGAACGGCGGATGGTGGAGTAGAATAC CGGTTGTAGACGGTAGGTATGCATGGATGTGTACAAGGATCGAACATGTG GGGTTGAGGAAACAATTTGAGAAATAAGCGAAGAGCGAGATCGAGC
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Coding sequence (CDS) from alignment at chr9:441845..443990-

>NO09G01350.1 ID=NO09G01350.1|Name=NO09G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=1950bp|location=Sequence derived from alignment at chr9:441845..443990- (Nannochloropsis oceanica)
ATGGCCTCGTCTACTGCGTCTGCGATGCCTGCCTTTTTCAGCAGCCGCCC
CGCCAGCGATGACGAAGCCTCTGCTCGTGCGTCTTCCCCGGCCTCGACGC
CACCCTATTCCTTCGCCACTAATCTGTTGGGCGCCTTTGGGGCGGTCCGC
AAAAAGAATGTCCAGACACTCAAGGTCTTGGAGGAGCTCAAGACCATGGT
CAAGAACCGGGCCTCCGTCGAAGAGGCCTATTCGCAGCAATTGACCCGCG
TCGTGGCCAACCACACCCACGGCCTGCGTCATCTGGGCGAGAAACTAACA
CGCAAAGCAGGCGGGGGTGGGCTTAGCGAGGTGGAGGCGGCCAAGGAGGC
GAGTCTGACTGCCAGTCACAGCACATTTCGGGAGTGCGTGGAGACCTTAA
AGGCAGACATGCTCAACAAGGCCGTGCAACGCAAGCAGCTTTCGGCAAGT
ATTCTCACCGATGTCTTTGGCCCAGTCGAAGAAATTTTCAACCAACTGGC
GGCGGAAAGCAAGGACTTGGAAGATACGATTTCAGCCTTGGCGAAAGAGG
GACGGGGGCTCGAGGCCAGGTACCGCTCCACGCACAAGAAACACGAGCAG
GCCGTCCAGCTCGCCACAACCACGAGCAATTTCTTATTGGAACAAGGTCA
TATCCTCCCAACCGTGGACATACATGCACTCTATCGACGGCATACGGCCA
CGTCCCGCGACAACAGTCCACCGCCCTCCTCACCTTTTGACCTGAGGAAG
GAGGAACTGAGCAGCATGGTCGCGGGTAGTCCTAGACTTCTCTCAGGTGC
CCTCACTAATATAGCCAAGAAGGACCTTACCGCCTGGCTTCTCCCCTCCG
GCAAAGACCGTCAACAAGACCTACAATCCACCGCACGGGACAACATGGAA
TTGGCTGTATTGCTTCGCTTTGCCTGTCGGGACCGCTACAACGAGCTTGC
CAGCTTTGCTCGCACGGCCACTCACACCTTACAAAAGGTATTATGTCAAT
ATCAATTATGCGAGGAAAGGTCCGTGGAAGAGCTGGCGGTGATGCTGCGG
AAGCAGGTGGTGTTCGAGTCGAGTTGCTTGGCGAATGAACAGTATGAGGT
TCAACTTATGTTTAAGGTCATTGAAGCTGTTGATCGGGACAGGGATTTAG
AAGCCTTTATTCATGCGCACAATGTCCCCTTTCCCGGCGCGGACGTAAGC
AATACGCTCCAAAGCCTTGGATTGTCTCTCTCCTCCCCCTTGCCTGCACC
ACCACCTCCTTATGAAGGTGCTGCTAGTACGATCACAAACACTGCACCCT
GTCATTCCTCCTCCTTTGACTCCTCGGTGTTGGATAGGGGGGATCTGCCC
AACCTCAGCAGCCCCTACCCCCACGTTGTGCCGGCTACAACAGTTCTCTG
CCTGCTTCGCGGAGGCTTATCTAGCTCCCGCACTCCAACACCTCCTCTTC
CACCTTTTCCCAGCACCTTATCCTCCCTGCGAATCGCGAAAAAACTTTCT
CCTTTTCCTTCTATTTGTTCTCTTTCCATGACGTCCACTCCTAGCAGTAA
GAGTCCCTCGCCTCTTCATCTTGTTTCCTCCAGTGCCCCTACCTCCTCTT
CCATTTCGTCACGCACTATCGTCTTTCCTCCTCCCTCCGATGATTCATCG
AACTCACCTGCTCCTACATCTGCAGAAGCATCGAGAACAGTAAAGCCGCC
AACCGGATCCGTGCGTATGCAATCAAACCATTTTCCACTTCATCTCGGTG
CGTTTGACACTCTTAAATCCGGTCTAGACGATAGTGAGGACGAGGACGAG
GACGAGGATAAAGGATTCTCCTCGCAGCACGACAAGCCGACGGCAGTAGG
GATAGTAGAGACAGATATCAGGAGGAACGATGCACCCTCTTCTCTTCTGC
CCTTGAAGGAGGTCCGAACGGCGGATGGTGGAGTAGAATACCGGTTGTAG
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Synonyms
Publications