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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:441845..443990 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G01350.1 vs.
Match: EWM27639.1 (hypothetical protein Naga_100059g9 [Nannochloropsis gaditana]) HSP 1 Score: 531.9 bits (1369), Expect = 2.700e-147 Identity = 326/657 (49.62%), Postives = 436/657 (66.36%), Query Frame = 0
Query: 1 MASSTASAMPAFFSSRPASDDEASARASSPASTPPYSFATNLLGAFGAVRKKNVQTLKVLEELKTMVKNRASVEEAYSQQLTRVVANHTHGLRHLGEKLTRKAGGGGLSEVEAAKEASLTASHSTFRECVETLKADMLNKAVQRKQLSASILTDVFGPVEEIFNQLAAESKDLEDTISALAKEGRGLEARYRSTHKKHEQAVQLATTTSNFLLEQGHILPTVDIHALYRRHTATSRDNSPPPSSPFDLRKEELSSMVAGSPRLLSGALTNIAKKDLTAWLLPSGKDRQQDLQSTARDNMELAVLLRFACRDRYNELASFARTATHTLQKVLCQYQLCEERSVEELAVMLRKQVVFESSCLANEQYEVQLMFKVIEAVDRDRDLEAFIHAHNVPFPGADVSNTLQSLGLSLSSPLPAPPPPYEGAASTITNTAPCHSSSFDSSVLDRGDLPNLSSPYPHVVPATTVLCLLRGGLSSSRTPTPPLPPFPSTLSSLRIAKKLSPFPSICSLSMTSTPSSKSPSPLHLVSSSAPTSSSISSRTIVFPP-PSDDSSNSPAPTSAEASRTVKPPTGSVRMQSNHFPLHLGAFDTLKSGLDDSEDEDEDEDKGFSS-QHDKPTAVGIV------ETDIRRNDAPSSLLPLKEVRTADGGVEYRL 650
MAS+T S+ ++ DE S+PPYSFAT+LLG+F VRK + QTLKVLEEL M+K RA+VEE YSQQ+ R+V++HTHGLR LGE L RKAGG G++E ++ E S STFRECVE+LKADMLN++VQRKQL+ +IL DVF P+E+I+++LA+ES+ LED + L K+GR E+RYRS HKK+EQAVQLAT + L E+G LP++DI L++R++ +SR SP SPFDL+KE+ S+++AGSPR +S A T AKKD+T WLLP K R+ DL + A++++E+A L RFAC +R++EL++FAR A H LQ+VLC YQ CEER +E LAV+LRKQ+VFESSCLANEQ+E Q++FKVIEA+D+D+DLEAFIHAH VPFPGADV +TL+SLGL + +PLPAPP E + + H+S + ++ R DLP+LSSP P VVPATTVL LL G LS+S TPT P P STL + S F S+ + S+ +SP L S +A S+ ++ PP P P A PP SVR+ + P D ++D +E E++D+GFS+ Q G+ + + R+ S L+PL+E+ TADGG+EYRL
Sbjct: 1 MASATTPDSLLSSPSKLSTHDE-----KIHTSSPPYSFATDLLGSFEKVRKNHTQTLKVLEELAIMIKGRAAVEEVYSQQMARLVSDHTHGLRRLGEALARKAGGMGVNEGDSVAETSSCTIESTFRECVESLKADMLNRSVQRKQLAKNILADVFAPLEDIYDRLASESRGLEDLLGTLTKQGRACESRYRSAHKKYEQAVQLATNACDILTEKGQSLPSLDIKLLHQRYSNSSRAASPATPSPFDLKKEDFSAILAGSPRKISEAFTQAAKKDITTWLLPLDKGRRDDLDTIAKNHLEMAELFRFACLERFDELSTFARRAAHELQRVLCHYQSCEERCIERLAVVLRKQIVFESSCLANEQFEAQIIFKVIEAMDKDKDLEAFIHAHKVPFPGADVDSTLKSLGL-IGNPLPAPPASPEEIGKSTCDENLLHASG--TVIVGREDLPHLSSPAPRVVPATTVLRLLGGNLSASGTPT-PTPHHSSTLRTTN-GNPFSDFSSMLNKSL------RSPLAAALSSKNAAPPPDAPSQVLMSPPVPEVGLEGLPFELQA-------PP--SVRLGNMVEPTQ-SLDDEGHDSVEDEIEEGENDDEGFSALQKHARRLRGVAKEYSPYQEEGNRSAISSPLIPLEEILTADGGIEYRL 631
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G01350.1 ID=NO09G01350.1|Name=NO09G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2050bp CAGAAGGCAAACAATGGCCTCGTCTACTGCGTCTGCGATGCCTGCCTTTT TCAGCAGCCGCCCCGCCAGCGATGACGAAGCCTCTGCTCGTGCGTCTTCC CCGGCCTCGACGCCACCCTATTCCTTCGCCACTAATCTGTTGGGCGCCTT TGGGGCGGTCCGCAAAAAGAATGTCCAGACACTCAAGGTCTTGGAGGAGC TCAAGACCATGGTCAAGAACCGGGCCTCCGTCGAAGAGGCCTATTCGCAG CAATTGACCCGCGTCGTGGCCAACCACACCCACGGCCTGCGTCATCTGGG CGAGAAACTAACACGCAAAGCAGGCGGGGGTGGGCTTAGCGAGGTGGAGG CGGCCAAGGAGGCGAGTCTGACTGCCAGTCACAGCACATTTCGGGAGTGC GTGGAGACCTTAAAGGCAGACATGCTCAACAAGGCCGTGCAACGCAAGCA GCTTTCGGCAAGTATTCTCACCGATGTCTTTGGCCCAGTCGAAGAAATTT TCAACCAACTGGCGGCGGAAAGCAAGGACTTGGAAGATACGATTTCAGCC TTGGCGAAAGAGGGACGGGGGCTCGAGGCCAGGTACCGCTCCACGCACAA GAAACACGAGCAGGCCGTCCAGCTCGCCACAACCACGAGCAATTTCTTAT TGGAACAAGGTCATATCCTCCCAACCGTGGACATACATGCACTCTATCGA CGGCATACGGCCACGTCCCGCGACAACAGTCCACCGCCCTCCTCACCTTT TGACCTGAGGAAGGAGGAACTGAGCAGCATGGTCGCGGGTAGTCCTAGAC TTCTCTCAGGTGCCCTCACTAATATAGCCAAGAAGGACCTTACCGCCTGG CTTCTCCCCTCCGGCAAAGACCGTCAACAAGACCTACAATCCACCGCACG GGACAACATGGAATTGGCTGTATTGCTTCGCTTTGCCTGTCGGGACCGCT ACAACGAGCTTGCCAGCTTTGCTCGCACGGCCACTCACACCTTACAAAAG GTATTATGTCAATATCAATTATGCGAGGAAAGGTCCGTGGAAGAGCTGGC GGTGATGCTGCGGAAGCAGGTGGTGTTCGAGTCGAGTTGCTTGGCGAATG AACAGTATGAGGTTCAACTTATGTTTAAGGTCATTGAAGCTGTTGATCGG GACAGGGATTTAGAAGCCTTTATTCATGCGCACAATGTCCCCTTTCCCGG CGCGGACGTAAGCAATACGCTCCAAAGCCTTGGATTGTCTCTCTCCTCCC CCTTGCCTGCACCACCACCTCCTTATGAAGGTGCTGCTAGTACGATCACA AACACTGCACCCTGTCATTCCTCCTCCTTTGACTCCTCGGTGTTGGATAG GGGGGATCTGCCCAACCTCAGCAGCCCCTACCCCCACGTTGTGCCGGCTA CAACAGTTCTCTGCCTGCTTCGCGGAGGCTTATCTAGCTCCCGCACTCCA ACACCTCCTCTTCCACCTTTTCCCAGCACCTTATCCTCCCTGCGAATCGC GAAAAAACTTTCTCCTTTTCCTTCTATTTGTTCTCTTTCCATGACGTCCA CTCCTAGCAGTAAGAGTCCCTCGCCTCTTCATCTTGTTTCCTCCAGTGCC CCTACCTCCTCTTCCATTTCGTCACGCACTATCGTCTTTCCTCCTCCCTC CGATGATTCATCGAACTCACCTGCTCCTACATCTGCAGAAGCATCGAGAA CAGTAAAGCCGCCAACCGGATCCGTGCGTATGCAATCAAACCATTTTCCA CTTCATCTCGGTGCGTTTGACACTCTTAAATCCGGTCTAGACGATAGTGA GGACGAGGACGAGGACGAGGATAAAGGATTCTCCTCGCAGCACGACAAGC CGACGGCAGTAGGGATAGTAGAGACAGATATCAGGAGGAACGATGCACCC TCTTCTCTTCTGCCCTTGAAGGAGGTCCGAACGGCGGATGGTGGAGTAGA ATACCGGTTGTAGACGGTAGGTATGCATGGATGTGTACAAGGATCGAACA TGTGGGGTTGAGGAAACAATTTGAGAAATAAGCGAAGAGCGAGATCGAGC back to topprotein sequence of NO09G01350.1 >NO09G01350.1-protein ID=NO09G01350.1-protein|Name=NO09G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=650bp MASSTASAMPAFFSSRPASDDEASARASSPASTPPYSFATNLLGAFGAVR KKNVQTLKVLEELKTMVKNRASVEEAYSQQLTRVVANHTHGLRHLGEKLT RKAGGGGLSEVEAAKEASLTASHSTFRECVETLKADMLNKAVQRKQLSAS ILTDVFGPVEEIFNQLAAESKDLEDTISALAKEGRGLEARYRSTHKKHEQ AVQLATTTSNFLLEQGHILPTVDIHALYRRHTATSRDNSPPPSSPFDLRK EELSSMVAGSPRLLSGALTNIAKKDLTAWLLPSGKDRQQDLQSTARDNME LAVLLRFACRDRYNELASFARTATHTLQKVLCQYQLCEERSVEELAVMLR KQVVFESSCLANEQYEVQLMFKVIEAVDRDRDLEAFIHAHNVPFPGADVS NTLQSLGLSLSSPLPAPPPPYEGAASTITNTAPCHSSSFDSSVLDRGDLP NLSSPYPHVVPATTVLCLLRGGLSSSRTPTPPLPPFPSTLSSLRIAKKLS PFPSICSLSMTSTPSSKSPSPLHLVSSSAPTSSSISSRTIVFPPPSDDSS NSPAPTSAEASRTVKPPTGSVRMQSNHFPLHLGAFDTLKSGLDDSEDEDE DEDKGFSSQHDKPTAVGIVETDIRRNDAPSSLLPLKEVRTADGGVEYRL* back to topmRNA from alignment at chr9:441845..443990- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G01350.1 ID=NO09G01350.1|Name=NO09G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2146bp|location=Sequence derived from alignment at chr9:441845..443990- (Nannochloropsis oceanica) CAGAAGGCAAACAATGGCCTCGTCTACTGCGTCTGCGATGCCTGCCTTTT
TCAGCAGCCGCCCCGCCAGCGATGACGAAGCCTCTGCTCGTGCGTCTTCC
CCGGCCTCGACGCCACCCTATTCCTTCGCCACTAATCTGTTGGGCGCCTT
TGGGGCGGTCCGCAAAAAGAATGTCCAGACACTCAAGGTCTTGGAGGAGC
TCAAGACCATGGTCAAGAACCGGGCCTCCGTCGAAGAGGCCTATTCGCAG
CAATTGACCCGCGTCGTGGCCAACCACACCCACGGCCTGCGTCATCTGGG
CGAGAAACTAACACGCAAAGCAGGCGGGGGTGGGCTTAGCGAGGTGGAGG
CGGCCAAGGAGGCGAGTCTGACTGCCAGTCACAGCACATTTCGGGAGTGC
GTGGAGACCTTAAAGGCAGACATGCTCAACAAGGCCGTGCAACGCAAGCA
GCTTTCGGCAAGTATTCTCACCGATGTCTTTGGCCCAGTCGAAGAAATTT
TCAACCAACTGGCGGCGGAAAGCAAGGACTTGGAAGATACGATTTCAGCC
TTGGCGAAAGAGGGACGGGGGCTCGAGGCCAGGTACCGCTCCACGCACAA
GAAACACGAGCAGGCCGTCCAGCTCGCCACAACCACGAGCAATTTCTTAT
TGGAACAAGGTCATATCCTCCCAACCGTGGACATACATGCACTCTATCGA
CGGCATACGGCCACGTCCCGCGACAACAGTCCACCGCCCTCCTCACCTTT
TGACCTGAGGAAGGAGGAACTGAGCAGCATGGTCGCGGGTAGTCCTAGAC
TTCTCTCAGGTGCCCTCACTAATATAGCCAAGAAGGACCTTACGTGAGTG
CATAATTAGGTTTGGGTCAAGCGTGCAGGATGGATATGGGTACCTCTCTG
TTCTCCTCACCCTCCTACCACCGCCATTCCACAAAATAGCGCCTGGCTTC
TCCCCTCCGGCAAAGACCGTCAACAAGACCTACAATCCACCGCACGGGAC
AACATGGAATTGGCTGTATTGCTTCGCTTTGCCTGTCGGGACCGCTACAA
CGAGCTTGCCAGCTTTGCTCGCACGGCCACTCACACCTTACAAAAGGTAT
TATGTCAATATCAATTATGCGAGGAAAGGTCCGTGGAAGAGCTGGCGGTG
ATGCTGCGGAAGCAGGTGGTGTTCGAGTCGAGTTGCTTGGCGAATGAACA
GTATGAGGTTCAACTTATGTTTAAGGTCATTGAAGCTGTTGATCGGGACA
GGGATTTAGAAGCCTTTATTCATGCGCACAATGTCCCCTTTCCCGGCGCG
GACGTAAGCAATACGCTCCAAAGCCTTGGATTGTCTCTCTCCTCCCCCTT
GCCTGCACCACCACCTCCTTATGAAGGTGCTGCTAGTACGATCACAAACA
CTGCACCCTGTCATTCCTCCTCCTTTGACTCCTCGGTGTTGGATAGGGGG
GATCTGCCCAACCTCAGCAGCCCCTACCCCCACGTTGTGCCGGCTACAAC
AGTTCTCTGCCTGCTTCGCGGAGGCTTATCTAGCTCCCGCACTCCAACAC
CTCCTCTTCCACCTTTTCCCAGCACCTTATCCTCCCTGCGAATCGCGAAA
AAACTTTCTCCTTTTCCTTCTATTTGTTCTCTTTCCATGACGTCCACTCC
TAGCAGTAAGAGTCCCTCGCCTCTTCATCTTGTTTCCTCCAGTGCCCCTA
CCTCCTCTTCCATTTCGTCACGCACTATCGTCTTTCCTCCTCCCTCCGAT
GATTCATCGAACTCACCTGCTCCTACATCTGCAGAAGCATCGAGAACAGT
AAAGCCGCCAACCGGATCCGTGCGTATGCAATCAAACCATTTTCCACTTC
ATCTCGGTGCGTTTGACACTCTTAAATCCGGTCTAGACGATAGTGAGGAC
GAGGACGAGGACGAGGATAAAGGATTCTCCTCGCAGCACGACAAGCCGAC
GGCAGTAGGGATAGTAGAGACAGATATCAGGAGGAACGATGCACCCTCTT
CTCTTCTGCCCTTGAAGGAGGTCCGAACGGCGGATGGTGGAGTAGAATAC
CGGTTGTAGACGGTAGGTATGCATGGATGTGTACAAGGATCGAACATGTG
GGGTTGAGGAAACAATTTGAGAAATAAGCGAAGAGCGAGATCGAGC back to topCoding sequence (CDS) from alignment at chr9:441845..443990- >NO09G01350.1 ID=NO09G01350.1|Name=NO09G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=1950bp|location=Sequence derived from alignment at chr9:441845..443990- (Nannochloropsis oceanica) ATGGCCTCGTCTACTGCGTCTGCGATGCCTGCCTTTTTCAGCAGCCGCCC CGCCAGCGATGACGAAGCCTCTGCTCGTGCGTCTTCCCCGGCCTCGACGC CACCCTATTCCTTCGCCACTAATCTGTTGGGCGCCTTTGGGGCGGTCCGC AAAAAGAATGTCCAGACACTCAAGGTCTTGGAGGAGCTCAAGACCATGGT CAAGAACCGGGCCTCCGTCGAAGAGGCCTATTCGCAGCAATTGACCCGCG TCGTGGCCAACCACACCCACGGCCTGCGTCATCTGGGCGAGAAACTAACA CGCAAAGCAGGCGGGGGTGGGCTTAGCGAGGTGGAGGCGGCCAAGGAGGC GAGTCTGACTGCCAGTCACAGCACATTTCGGGAGTGCGTGGAGACCTTAA AGGCAGACATGCTCAACAAGGCCGTGCAACGCAAGCAGCTTTCGGCAAGT ATTCTCACCGATGTCTTTGGCCCAGTCGAAGAAATTTTCAACCAACTGGC GGCGGAAAGCAAGGACTTGGAAGATACGATTTCAGCCTTGGCGAAAGAGG GACGGGGGCTCGAGGCCAGGTACCGCTCCACGCACAAGAAACACGAGCAG GCCGTCCAGCTCGCCACAACCACGAGCAATTTCTTATTGGAACAAGGTCA TATCCTCCCAACCGTGGACATACATGCACTCTATCGACGGCATACGGCCA CGTCCCGCGACAACAGTCCACCGCCCTCCTCACCTTTTGACCTGAGGAAG GAGGAACTGAGCAGCATGGTCGCGGGTAGTCCTAGACTTCTCTCAGGTGC CCTCACTAATATAGCCAAGAAGGACCTTACCGCCTGGCTTCTCCCCTCCG GCAAAGACCGTCAACAAGACCTACAATCCACCGCACGGGACAACATGGAA TTGGCTGTATTGCTTCGCTTTGCCTGTCGGGACCGCTACAACGAGCTTGC CAGCTTTGCTCGCACGGCCACTCACACCTTACAAAAGGTATTATGTCAAT ATCAATTATGCGAGGAAAGGTCCGTGGAAGAGCTGGCGGTGATGCTGCGG AAGCAGGTGGTGTTCGAGTCGAGTTGCTTGGCGAATGAACAGTATGAGGT TCAACTTATGTTTAAGGTCATTGAAGCTGTTGATCGGGACAGGGATTTAG AAGCCTTTATTCATGCGCACAATGTCCCCTTTCCCGGCGCGGACGTAAGC AATACGCTCCAAAGCCTTGGATTGTCTCTCTCCTCCCCCTTGCCTGCACC ACCACCTCCTTATGAAGGTGCTGCTAGTACGATCACAAACACTGCACCCT GTCATTCCTCCTCCTTTGACTCCTCGGTGTTGGATAGGGGGGATCTGCCC AACCTCAGCAGCCCCTACCCCCACGTTGTGCCGGCTACAACAGTTCTCTG CCTGCTTCGCGGAGGCTTATCTAGCTCCCGCACTCCAACACCTCCTCTTC CACCTTTTCCCAGCACCTTATCCTCCCTGCGAATCGCGAAAAAACTTTCT CCTTTTCCTTCTATTTGTTCTCTTTCCATGACGTCCACTCCTAGCAGTAA GAGTCCCTCGCCTCTTCATCTTGTTTCCTCCAGTGCCCCTACCTCCTCTT CCATTTCGTCACGCACTATCGTCTTTCCTCCTCCCTCCGATGATTCATCG AACTCACCTGCTCCTACATCTGCAGAAGCATCGAGAACAGTAAAGCCGCC AACCGGATCCGTGCGTATGCAATCAAACCATTTTCCACTTCATCTCGGTG CGTTTGACACTCTTAAATCCGGTCTAGACGATAGTGAGGACGAGGACGAG GACGAGGATAAAGGATTCTCCTCGCAGCACGACAAGCCGACGGCAGTAGG GATAGTAGAGACAGATATCAGGAGGAACGATGCACCCTCTTCTCTTCTGC CCTTGAAGGAGGTCCGAACGGCGGATGGTGGAGTAGAATACCGGTTGTAG back to top
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