NO09G01330.1, NO09G01330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01330.1
Unique NameNO09G01330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1044
Alignment locationchr9:438306..439535 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:438306..439535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G01330.1 vs.
Match: EWM27632.1 (hypothetical protein Naga_100059g7 [Nannochloropsis gaditana])

HSP 1 Score: 407.5 bits (1046), Expect = 4.100e-110
Identity = 212/359 (59.05%), Postives = 264/359 (73.54%), Query Frame = 0
Query:    2 QRTTRSGLAYLIKTLPSSSSASLSATCTILFCHANGFNKEVFLPVWEELEKRWRAYPGTCPPPLTLVSLDFTGHGDSRGVSGPECYDWRKGAGRDVLEMLQELGQTGTTPCLGVGHSLGATALTMVELTHPGLFFAGLVLIEPVLVPPGGEGSMSEALSERALKRRASWPYKTAAREYLASRQMFKRWDPRAFNAYIDGGLEE-----IDHKGDPHQLPTGTIQRMVR------LKCKPESEAGYYRGAGASVWPELPKLGVSRPVTFIAGEHSEHMSAIL-ITEKHSTGADAARMLVGLMGPQTRLVLVPKGSHFVVMEDVALVAGMVWERVLETMREKNSSGSTAGEEGAG-ARSSL 348
            +RTTR GLAYL+K+LPS S+++ S  CTILF HANGFNKE+FLPVWE+LE+RW+A+ G    PL LVS DFTGHGDSR   G + YDWR GAG DV+EMLQE+GQ G TPC+GVGHSLGA+A+T+VEL HPG+F  GLVLIEPVLVP GGE +M+++LSERAL+RRASWP + A REY+  R +FKRWD RA +AY++GG+EE       H  D    P+       R      LKCKP++EAGYY G+GASVWP+L +LG +RPVTFIAGE SEHM A+L  T+  ++GADAA+ LVG+MG + ++ +VP  SHFV+MEDV  VA +VW  VL+T+      G  A  E  G  RSSL
Sbjct:    6 RRTTRDGLAYLMKSLPSCSTSNSSEPCTILFGHANGFNKEIFLPVWEDLERRWQAHKGL-RSPLILVSFDFTGHGDSRHPLGNDRYDWRNGAGSDVMEMLQEMGQRGRTPCIGVGHSLGASAMTLVELAHPGMFSMGLVLIEPVLVPVGGESTMTKSLSERALRRRASWPSREAVREYMERRPIFKRWDSRALDAYLEGGMEERALTDASHDEDLTACPSAREPSSHRDSVEIVLKCKPKTEAGYYTGSGASVWPQLHQLGQARPVTFIAGEKSEHMPAVLSATQAVTSGADAAKTLVGMMGARAKVFVVPNASHFVLMEDVDRVAELVWGHVLQTV------GREASNEVCGNKRSSL 357          
The following BLAST results are available for this feature:
BLAST of NO09G01330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27632.14.100e-11059.05hypothetical protein Naga_100059g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01330NO09G01330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01330.1NO09G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01330.1.cds1NO09G01330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01330.1.cds2NO09G01330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01330.1.cds3NO09G01330.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01330.1 ID=NO09G01330.1|Name=NO09G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1044bp
ATGCAGCGAACCACGCGGAGTGGTCTCGCGTATTTAATCAAGACCTTGCC
GTCCTCCAGCAGCGCTAGCCTTTCTGCCACGTGCACCATCCTCTTTTGCC
ATGCAAATGGATTCAACAAGGAGGTCTTCCTACCCGTGTGGGAGGAGCTG
GAGAAGCGCTGGCGGGCTTATCCGGGCACGTGTCCTCCTCCCCTGACCCT
CGTAAGTCTTGATTTTACGGGCCATGGAGACAGCCGAGGCGTTTCGGGGC
CCGAGTGCTACGACTGGCGAAAGGGGGCAGGGCGGGACGTGTTAGAGATG
CTGCAAGAGTTGGGGCAGACGGGAACGACGCCCTGCCTTGGCGTGGGCCA
TTCTCTGGGGGCTACGGCCCTGACTATGGTGGAGTTGACGCATCCAGGCC
TATTTTTTGCGGGGCTGGTACTGATAGAGCCGGTGCTTGTGCCTCCTGGC
GGAGAAGGATCCATGTCGGAGGCTTTGTCGGAGCGGGCACTGAAGCGGCG
AGCATCGTGGCCATACAAAACAGCAGCAAGGGAGTACTTAGCAAGCCGGC
AAATGTTCAAGCGTTGGGACCCCCGGGCTTTCAATGCCTATATCGATGGA
GGACTTGAAGAAATCGACCACAAAGGTGACCCACACCAATTACCAACAGG
GACAATCCAGCGCATGGTCCGACTAAAGTGCAAACCTGAGAGCGAAGCAG
GTTATTACCGCGGCGCTGGTGCTAGTGTCTGGCCTGAGCTTCCCAAATTG
GGTGTTTCTCGTCCCGTCACTTTCATTGCGGGCGAGCATTCCGAACACAT
GTCAGCTATACTAATAACTGAGAAACATTCAACGGGCGCGGATGCGGCGA
GGATGCTGGTGGGATTGATGGGGCCACAAACACGCCTGGTGCTTGTCCCG
AAGGGGAGCCATTTTGTAGTGATGGAGGACGTGGCACTGGTGGCAGGCAT
GGTGTGGGAACGTGTGTTGGAGACAATGAGAGAAAAAAATAGTAGCGGCA
GTACTGCAGGAGAGGAAGGCGCCGGTGCACGGTCATCTTTGTGA
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protein sequence of NO09G01330.1

>NO09G01330.1-protein ID=NO09G01330.1-protein|Name=NO09G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MQRTTRSGLAYLIKTLPSSSSASLSATCTILFCHANGFNKEVFLPVWEEL
EKRWRAYPGTCPPPLTLVSLDFTGHGDSRGVSGPECYDWRKGAGRDVLEM
LQELGQTGTTPCLGVGHSLGATALTMVELTHPGLFFAGLVLIEPVLVPPG
GEGSMSEALSERALKRRASWPYKTAAREYLASRQMFKRWDPRAFNAYIDG
GLEEIDHKGDPHQLPTGTIQRMVRLKCKPESEAGYYRGAGASVWPELPKL
GVSRPVTFIAGEHSEHMSAILITEKHSTGADAARMLVGLMGPQTRLVLVP
KGSHFVVMEDVALVAGMVWERVLETMREKNSSGSTAGEEGAGARSSL*
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mRNA from alignment at chr9:438306..439535+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01330.1 ID=NO09G01330.1|Name=NO09G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1230bp|location=Sequence derived from alignment at chr9:438306..439535+ (Nannochloropsis oceanica)
ATGCAGCGTAAGAAGAGCTACAGCTCGAATGGAGGGCTGGGAGGCATTGA TGGAGCACTCACACACCAATACAAAACGACAGGAACCACGCGGAGTGGTC TCGCGTATTTAATCAAGACCTTGCCGTCCTCCAGCAGCGCTAGCCTTTCT GCCACGTGCACCATCCTCTTTTGCCATGCAAATGGATTCAACAAGGAGGT CTTCCTACCCGTGTGGGAGGAGCTGGAGAAGCGCTGGCGGGCTTATCCGG GCACGTGTCCTCCTCCCCTGACCCTCGTAAGTCTTGATTTTACGGGCCAT GGAGACAGCCGAGGCGTTTCGGGGCCCGAGTGCTACGACTGGCGAAAGGG GGCAGGGCGGGACGTGTTAGAGATGCTGCAAGAGTTGGGGCAGACGGGAA CGACGCCCTGCCTTGGCGTGGGCCATTCTCTGGGGGCTACGGCCCTGACT ATGGTGGAGTTGACGCATCCAGGCCTATTTTTTGCGGGGCTGGTACTGAT AGAGCCGGTGCTTGTGCCTCCTGGCGGAGAAGGATCCATGTCGGAGGCTT TGTCGGAGCGGGCACTGAAGCGGCGAGCATCGTGGTTAGTCTTGGGTTGG ATTTTCTTTCTGACCGGAGATGTGTGTTTCTGCGTGAAAAATGTATAGAT TGATGATTATTCATATGCTCCTACTCCTCTTTCCTTTCTTAAAAGGCCAT ACAAAACAGCAGCAAGGGAGTACTTAGCAAGCCGGCAAATGTTCAAGCGT TGGGACCCCCGGGCTTTCAATGCCTATATCGATGGAGGACTTGAAGAAAT CGACCACAAAGGTGACCCACACCAATTACCAACAGGGACAATCCAGCGCA TGGTCCGACTAAAGTGCAAACCTGAGAGCGAAGCAGGTTATTACCGCGGC GCTGGTGCTAGTGTCTGGCCTGAGCTTCCCAAATTGGGTGTTTCTCGTCC CGTCACTTTCATTGCGGGCGAGCATTCCGAACACATGTCAGCTATACTAA TAACTGAGAAACATTCAACGGGCGCGGATGCGGCGAGGATGCTGGTGGGA TTGATGGGGCCACAAACACGCCTGGTGCTTGTCCCGAAGGGGAGCCATTT TGTAGTGATGGAGGACGTGGCACTGGTGGCAGGCATGGTGTGGGAACGTG TGTTGGAGACAATGAGAGAAAAAAATAGTAGCGGCAGTACTGCAGGAGAG GAAGGCGCCGGTGCACGGTCATCTTTGTGA
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Coding sequence (CDS) from alignment at chr9:438306..439535+

>NO09G01330.1 ID=NO09G01330.1|Name=NO09G01330.1|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at chr9:438306..439535+ (Nannochloropsis oceanica)
ATGCAGCGAACCACGCGGAGTGGTCTCGCGTATTTAATCAAGACCTTGCC
GTCCTCCAGCAGCGCTAGCCTTTCTGCCACGTGCACCATCCTCTTTTGCC
ATGCAAATGGATTCAACAAGGAGGTCTTCCTACCCGTGTGGGAGGAGCTG
GAGAAGCGCTGGCGGGCTTATCCGGGCACGTGTCCTCCTCCCCTGACCCT
CGTAAGTCTTGATTTTACGGGCCATGGAGACAGCCGAGGCGTTTCGGGGC
CCGAGTGCTACGACTGGCGAAAGGGGGCAGGGCGGGACGTGTTAGAGATG
CTGCAAGAGTTGGGGCAGACGGGAACGACGCCCTGCCTTGGCGTGGGCCA
TTCTCTGGGGGCTACGGCCCTGACTATGGTGGAGTTGACGCATCCAGGCC
TATTTTTTGCGGGGCTGGTACTGATAGAGCCGGTGCTTGTGCCTCCTGGC
GGAGAAGGATCCATGTCGGAGGCTTTGTCGGAGCGGGCACTGAAGCGGCG
AGCATCGTGGCCATACAAAACAGCAGCAAGGGAGTACTTAGCAAGCCGGC
AAATGTTCAAGCGTTGGGACCCCCGGGCTTTCAATGCCTATATCGATGGA
GGACTTGAAGAAATCGACCACAAAGGTGACCCACACCAATTACCAACAGG
GACAATCCAGCGCATGGTCCGACTAAAGTGCAAACCTGAGAGCGAAGCAG
GTTATTACCGCGGCGCTGGTGCTAGTGTCTGGCCTGAGCTTCCCAAATTG
GGTGTTTCTCGTCCCGTCACTTTCATTGCGGGCGAGCATTCCGAACACAT
GTCAGCTATACTAATAACTGAGAAACATTCAACGGGCGCGGATGCGGCGA
GGATGCTGGTGGGATTGATGGGGCCACAAACACGCCTGGTGCTTGTCCCG
AAGGGGAGCCATTTTGTAGTGATGGAGGACGTGGCACTGGTGGCAGGCAT
GGTGTGGGAACGTGTGTTGGAGACAATGAGAGAAAAAAATAGTAGCGGCA
GTACTGCAGGAGAGGAAGGCGCCGGTGCACGGTCATCTTTGTGA
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Synonyms
Publications